EWM26904.1, cds3769 (CDS) Nannochloropsis gaditana

Overview
NameEWM26904.1
Unique Namecds3769
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:19967..20164 +
Alignment locationCM002462.1:20279..20398 +
Alignment locationCM002462.1:20525..20623 +
Alignment locationCM002462.1:20812..21030 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26904.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100103g11.7041.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:19967..20164 +
CM002462.1supercontigCM002462.1:20279..20398 +
CM002462.1supercontigCM002462.1:20525..20623 +
CM002462.1supercontigCM002462.1:20812..21030 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26904.1 vs. NCBI_GenBank
Match: gi|585109034|gb|EWM26904.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 422.165 bits (1084), Expect = 2.195e-149
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEVCQVRPFSFQNFLMRVSSFY 211
            MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEVCQVRPFSFQNFLMRVSSFY
Sbjct:    1 MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEVCQVRPFSFQNFLMRVSSFY 211          
BLAST of EWM26904.1 vs. NCBI_GenBank
Match: gi|585109033|gb|EWM26903.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 380.948 bits (977), Expect = 1.915e-130
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191
            MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE
Sbjct:  125 MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 315          
BLAST of EWM26904.1 vs. NCBI_GenBank
Match: gi|553181303|ref|XP_005853541.1| (hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526] >gi|422295521|gb|EKU22820.1| hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 362.844 bits (930), Expect = 6.654e-123
Identity = 191/226 (84.51%), Postives = 191/226 (84.51%), Query Frame = 0
Query:    1 MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSIL-----------------------------------VHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191
            MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSIL                                   VHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE
Sbjct:   94 MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILHSPARNLGSGTLSQLTRFRRMLAPRVRLPFLVSGQVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 319          
BLAST of EWM26904.1 vs. NCBI_GenBank
Match: gi|553181298|ref|XP_005853540.1| (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526] >gi|422295520|gb|EKU22819.1| hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 92.0485 bits (227), Expect = 1.039e-18
Identity = 62/169 (36.69%), Postives = 103/169 (60.95%), Query Frame = 0
Query:   27 VEEKEGTE-EPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191
            V   +G + +P      I L+SS+HS V ++V  + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+
Sbjct:   74 VSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID 242          
BLAST of EWM26904.1 vs. NCBI_GenBank
Match: gi|585109030|gb|EWM26900.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 91.6633 bits (226), Expect = 1.347e-18
Identity = 62/169 (36.69%), Postives = 103/169 (60.95%), Query Frame = 0
Query:   27 VEEKEGTE-EPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191
            V   +G + +P      I L+SS+HS V ++V  + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+
Sbjct:   74 VSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID 242          
BLAST of EWM26904.1 vs. NCBI_GenBank
Match: gi|585109031|gb|EWM26901.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 78.9518 bits (193), Expect = 1.789e-14
Identity = 49/130 (37.69%), Postives = 80/130 (61.54%), Query Frame = 0
Query:   65 YQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191
            +  PKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+
Sbjct:   21 FHRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID 150          
BLAST of EWM26904.1 vs. NCBI_GenBank
Match: gi|585112577|gb|EWM29974.1| (hypothetical protein Naga_100383g2 [Nannochloropsis gaditana])

HSP 1 Score: 71.2478 bits (173), Expect = 3.690e-11
Identity = 49/154 (31.82%), Postives = 85/154 (55.19%), Query Frame = 0
Query:   40 SPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLP--LPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPG----SLLGVSTIPEHLLHAREGAHTTESVFVVRDL 187
            +PS S   S+HS    ++  I + L+ +P+WKYR + +S+++ +I   LLL VS+VYGFG+   H+ V     + P  +  +G+ P+R+ + ++NPN F I    +++ V S+  R+ G    + L  + +P   LHAR       + FV+  L
Sbjct:  108 APSFSTTQSVHS----VMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEV-VLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHL 256          
The following BLAST results are available for this feature:
BLAST of EWM26904.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585109034|gb|EWM26904.1|2.195e-149100.00hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|585109033|gb|EWM26903.1|1.915e-130100.00hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|553181303|ref|XP_005853541.1|6.654e-12384.51hypothetical protein NGA_0432901 [Nannochloropsis ... [more]
gi|553181298|ref|XP_005853540.1|1.039e-1836.69hypothetical protein NGA_0432801 [Nannochloropsis ... [more]
gi|585109030|gb|EWM26900.1|1.347e-1836.69hypothetical protein Naga_100103g12 [Nannochlorops... [more]
gi|585109031|gb|EWM26901.1|1.789e-1437.69hypothetical protein Naga_100103g12 [Nannochlorops... [more]
gi|585112577|gb|EWM29974.1|3.690e-1131.82hypothetical protein Naga_100383g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3778rna3778Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications