rna3775, rna3775 (mRNA) Nannochloropsis gaditana

Overview
Namerna3775
Unique Namerna3775
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1669
Alignment locationCM002462.1:17148..18945 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100103g12.7038.mrna
Orig protein idgnl|cribi|Naga_100103g12.7038
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:17148..18945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100103g12gene3636Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3775rna3775-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26901.1cds3766Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3775 ID=rna3775|Name=rna3775|organism=Nannochloropsis gaditana|type=mRNA|length=1669bp
TCATGCCGTGTGGACCGAGAGCTTAAAGGCAAAGACGTCAACACTTGAAT
ATTGCTCAGCGACTAGGCGATCCCCTTGCAAGGCTTGAATTTCCATGTCC
CTCACCCGCGCACCTTCTTTTTCTCCGGCGCAGACGCCTTATGGAAGAAG
GGGAAGTGCCTGCCGACGAAAGACATGTGGCGACCATGGATGGAATTGCA
ACTGCGGACGGCCCAGTTTCCTCTTTGTCCTCAACTTCCTCCTTCTCACA
AAATTCTGCTGTGGCCTTCGAGATGGACGACAATCTGCTCCTTGAAGAAG
CTCGCGTGCCCGAAGCACAAGTCCAGTCTCAAAGATCGCTGGAGTTGGTG
GCCAAGTGGCGGGGGAAGGAGATCAATTTGGGGTCAATCCCTGACGGCTG
TACCATTGCCAACTTGAAGATTATCCTTGAAGCCAAAACTCGGGTCCTGC
CCGAAAAACAGAAAATCATCGGCCTCACTATCCAAGGCGGTAAAGTGGCC
AAGAACGAGCACACGCTGGACCAGCTGGTGGTGAAGGATAAGCGGGGCCC
TGTGAGGTTCATGCTCATCGGCACTCCTGAGGCAGAAGTATTTGTGGACC
CGCAGGAGAAGGAGAGCCTTCCCGAGGTCTTTGACGACTTTGACCTTGAT
GTTACGGCGCTTTCCGAGGGATGGAGGCGCTCCGTACAAAATAGTGAAAA
CCTTCGCAAATTTACAGCGAAGACCCAAGTGCATTTGATCAACCCGCCAA
GGGATGGAAAAAGGCTGCTGGTGCTTGATTTGGATCATACTCTGTTGGAT
TTCAGCTCCCGGGAGGATGTGATCGACAGACTACCCATGGCAGAAGCCGC
AAGTGTCATGAAACGCCCTCACCTGGACGCTTTCCTCGCGGCAGTTTACC
CCTACTACGACCTAGTGGCGTGGAGTCAAACCTCCTGGCGATGGCTCGAG
ATCAAAATGGTGGAGCTCGGTCTGCTCACCCATCCTGCCTACCGCTTCTG
TTTTGTCCTCGATAAAACGAGCATGTTTCACGTCGAATCCACCAAGGGGG
ACGGGAGTCTGTTCAAGCACCAGGTCAAGCCTCTGCAGCTCATCTGGACC
AAATTTCCGCAATGGGACGAAAACAACTCGATCCACGTCGATGACCTCTC
CCGGAATTTCGCTCTGAACACGGGTAACGGACTGAAAATCAAGGCTTACT
ACCGCAATGCCGAACGAGCAAGTGAAGATCGGGAGCTTCTATATTTGGGA
CGTTACCTTGTCAATATTGCCACACGACCTGTAGCACCCGCTTCCGGTGG
AGGAGGGACACCGGGGGGGGCTGGAAGCGATGCTGGGTCTGGCGGCGGTG
GTGGGCCAGGAAGCAGGGGCCGGGGGTGGAGGGGAGGGCTAGGGGAAGGA
GGACAAGGAAGAAGTGGAACGAATCAAAGCCTGCGCGACCACAAGAATTG
GCGTGACGAAGCCAAGGGGGGGGGGAGGAGGAGGTAATGGGGGATGGGTA
GGAGAGCAGTAGGTAGTTCAAATGTTGCGCGTGTAGATATGTTAAAATGA
AAGAGGATCTCGTACGCAGGAGGCTAGTGTGACATACGTGGGGAGATGTG
CAAAGGTAAACAGACATTGTTGACTTTTATGTGTTGCGAATTATTTGAAC
CAATGTTCTTCTTGCCGGG
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protein sequence of rna3775

>rna3775-protein ID=rna3775-protein|Name=rna3775|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MPPVTPIFSRALTFFLVCSSFHRPKWQYRLLLCTVIILFVSLVLVLTVSV
LYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSS
LSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID
GGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCV
FRLFLVHRAKIVCSTRQVLVKSP
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mRNA from alignment at CM002462.1:17148..18945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3775 ID=rna3775|Name=rna3775|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp|location=Sequence derived from alignment at CM002462.1:17148..18945+ (Nannochloropsis gaditana)
ATTCACAGAGGCAATCGTTGTTTGGGATTTTTTGGTGGCTATTCATTGAG
AGGTCATGCCTCCGCCGTCGCCTCGAGATCTTCGTCCTCGATCAGACAGT
CACGACACGCAGGACACAGGGGATGCCGAGCTGGGAGAGATTAATATTCC
CGACTCGACGGACGCCAGCGTTCCCCGTAGTTTTATTCGGAAAAAAGACA
AATTAAGTACGAGTAACACGAGCATATCTTCCAGTAATTCTACTCGACGA
TGTAATTCAGAATGGCACTCCGCTGTATCCAGccacgacggggaggacct
GAAGCCACCGGGGACACCATCACAGATACATCTCATGTCCTCCATGCATT
CTCAGGTGGTGAATGTTGTTCACCATGTTCAAGACTATCTCCATCACATG
TAAGCAGACTGTTTgagagaaaggcgggaatTTTCGATAGATGTCTTTAT
CCCTCCTCACTTCCCAGAGTTACGTGCCGGCGCTTTGTTTTTGGGTTGCA
ATCACGTGTTTCTTGGGATAGTAGTTTTACCAGATGAGCGGACCTCGCAT
TTGTTTTTTGCAGAGTGCCATGTCATGCCGCCTGTCACGCCCATCTTTTC
CAGAGCTCTCACCTTTTTCCTTGtctgttcctccttccacaggcCCAAGT
GGCAATACCGCCTGCTTTTATGCACTGTCATCATCCTttttgtctccctc
gtcctggtCTTGACCGTTTCGGTGCTGTACGGCTTCAACATGGCCCTGCC
ACACATACGAGTGGTAAAGATGAGGGCGTtatgggaggggaaagggaggt
atAGGGCACCAAACTTACCGCCCTGGGGCAAATGCTCATTCGCAGAGGGG
ACATTCCAGAAAAATAAGATGACAGACAAgcacttcctctctctttttcc
tatCCCCCCAGACGAACGTccgtctcgccctccccccaccacACGTGGAC
TCTGCCGGCCACATTCCCATcgtctccaccatcctcttctccaatcccaa
ctccttcttcaccacctccagcctCTCGCCTATACGCAtctacgccctcc
cctcccgctcccccgaGAGCCTGCTGGCCCTCACCGCGCCTCGGACCATC
CGGCTGGCCGGGCACGAGGAAGGCTATTCTTTTGACGTGAACTTCACCTT
GAAGGACGTGGGGAGCATCGATGGGGGGAACGCCACGGTCGCAGCGGTTT
TGGAGGTGAGTAAGGAATGTCGGAAGGGGTTAGGGCTAGAGGCAGGCTTA
GGGCCGAGGCTGGAGATGCATgcgtgggtgggaaagagggggcggaaagC
GTCGGATGCCTGTTCATGTGTCTTTCGCCTTTTTCTCGTCCACAGGGCCA
AAATTGTCTGCTCTACACGACAAGTACTAGTAAAATCACCGTGAAGGGCT
TGGGACTCATTCCTACCAGCCGGAATTTCAAGGTGGAATGCACGGTGCTA
AGAAAGTGGGGCGAGAACCCCCTGACCCTCAGCGATTGCTACGGGCGCTT
TTACAAGGGATAGTCCAGGTTCGAAGGGGCGAGGATATGGTCTGGATAGA
GTAGTGAGGCAGTAAATTAAAGCGAGTTGGAACTTTTGAAGTGGCAACCG
AGAGGGTTgtcaggaagggaggcggagggcggtcgACGACGACAAGTTTT
GAGTTGTGCTCCGAGGAGGCTCTCGTGTATAGGAGGGACTTCAGCCGGGA
CGTGCAGGCCCGGAGGAGCCACTGAAATTTGCGAAATTAACAAATTTTTC
CGATGTGTGTAGgtgagaaaaaaagaataatCTTTGCGTAATTGCATG
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Coding sequence (CDS) from alignment at CM002462.1:17148..18945+

>rna3775 ID=rna3775|Name=rna3775|organism=Nannochloropsis gaditana|type=CDS|length=1344bp|location=Sequence derived from alignment at CM002462.1:17148..18945+ (Nannochloropsis gaditana)
ATGCCGCCTGTCACGCCCATCTTTTCCAGAGCTCTCACCTTTTTCCTTGt
ctgttcctccttccacaggcCCAAGTGGCAATACCGCCTGCTTTTATGCA
CTGTCATCATCCTttttgtctccctcgtcctggtCTTGACCGTTTCGGTG
CTGTACGGCTTCAACATGGCCCTGCCACACATACGAGTGACGAACGTccg
tctcgccctccccccaccacACGTGGACTCTGCCGGCCACATTCCCATcg
tctccaccatcctcttctccaatcccaactccttcttcaccacctccagc
ctCTCGCCTATACGCAtctacgccctcccctcccgctcccccgaGAGCCT
GCTGGCCCTCACCGCGCCTCGGACCATCCGGCTGGCCGGGCACGAGGAAG
GCTATTCTTTTGACGTGAACTTCACCTTGAAGGACGTGGGGAGCATCGAT
GGGGGGAACGCCACGGTCGCAGCGGTTTTGGAGGTGAGTAAGGAATGTCG
GAAGGGGTTAGGGCTAGAGGCAGGCTTAGGGCCGAGGCTGGAGATGCATg
cgtgggtgggaaagagggggcggaaagCGTCGGATGCCTGTTCATGTGTC
TTTCGCCTTTTTCTCGTCCACAGGGCCAAAATTGTCTGCTCTACACGACA
AGTACTAGTAAAATCACCGTGAATGCCGCCTGTCACGCCCATCTTTTCCA
GAGCTCTCACCTTTTTCCTTGtctgttcctccttccacaggcCCAAGTGG
CAATACCGCCTGCTTTTATGCACTGTCATCATCCTttttgtctccctcgt
cctggtCTTGACCGTTTCGGTGCTGTACGGCTTCAACATGGCCCTGCCAC
ACATACGAGTGACGAACGTccgtctcgccctccccccaccacACGTGGAC
TCTGCCGGCCACATTCCCATcgtctccaccatcctcttctccaatcccaa
ctccttcttcaccacctccagcctCTCGCCTATACGCAtctacgccctcc
cctcccgctcccccgaGAGCCTGCTGGCCCTCACCGCGCCTCGGACCATC
CGGCTGGCCGGGCACGAGGAAGGCTATTCTTTTGACGTGAACTTCACCTT
GAAGGACGTGGGGAGCATCGATGGGGGGAACGCCACGGTCGCAGCGGTTT
TGGAGGTGAGTAAGGAATGTCGGAAGGGGTTAGGGCTAGAGGCAGGCTTA
GGGCCGAGGCTGGAGATGCATgcgtgggtgggaaagagggggcggaaagC
GTCGGATGCCTGTTCATGTGTCTTTCGCCTTTTTCTCGTCCACAGGGCCA
AAATTGTCTGCTCTACACGACAAGTACTAGTAAAATCACCGTGA
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Synonyms
Publications