EWM26901.1, cds3766 (CDS) Nannochloropsis gaditana

Overview
NameEWM26901.1
Unique Namecds3766
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:17722..17910 +
Alignment locationCM002462.1:18059..18541 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26901.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100103g12.7038.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:17722..17910 +
CM002462.1supercontigCM002462.1:18059..18541 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26901.1 vs. NCBI_GenBank
Match: gi|585109031|gb|EWM26901.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 450.669 bits (1158), Expect = 3.241e-160
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MPPVTPIFSRALTFFLVCSSFHRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 223
            MPPVTPIFSRALTFFLVCSSFHRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP
Sbjct:    1 MPPVTPIFSRALTFFLVCSSFHRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 223          
BLAST of EWM26901.1 vs. NCBI_GenBank
Match: gi|585109030|gb|EWM26900.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 409.068 bits (1050), Expect = 2.617e-142
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0
Query:   22 HRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 223
            H PKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP
Sbjct:  114 HMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEVSKECRKGLGLEAGLGPRLEMHAWVGKRGRKASDACSCVFRLFLVHRAKIVCSTRQVLVKSP 315          
BLAST of EWM26901.1 vs. NCBI_GenBank
Match: gi|553181298|ref|XP_005853540.1| (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526] >gi|422295520|gb|EKU22819.1| hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 281.567 bits (719), Expect = 3.666e-92
Identity = 146/161 (90.68%), Postives = 146/161 (90.68%), Query Frame = 0
Query:   22 HRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE----------VSKECRKGLGL 172
            H PKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE           SK   KGLGL
Sbjct:  114 HMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGL 274          
BLAST of EWM26901.1 vs. NCBI_GenBank
Match: gi|585109033|gb|EWM26903.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 88.5817 bits (218), Expect = 5.058e-17
Identity = 55/141 (39.01%), Postives = 86/141 (60.99%), Query Frame = 0
Query:   21 FHRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALP-PPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVL 160
            +  PKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP PP     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+GG     AVL
Sbjct:  189 YQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPD----GSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVL 325          
BLAST of EWM26901.1 vs. NCBI_GenBank
Match: gi|585109034|gb|EWM26904.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 81.2629 bits (199), Expect = 2.986e-15
Identity = 49/130 (37.69%), Postives = 80/130 (61.54%), Query Frame = 0
Query:   21 FHRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID 150
            +  PKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+
Sbjct:   65 YQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191          
BLAST of EWM26901.1 vs. NCBI_GenBank
Match: gi|553181303|ref|XP_005853541.1| (hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526] >gi|422295521|gb|EKU22820.1| hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 67.781 bits (164), Expect = 1.206e-9
Identity = 53/166 (31.93%), Postives = 84/166 (50.60%), Query Frame = 0
Query:   21 FHRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALP-PPHVDSAGHIPIVSTILFSNPNSFF------------TTSSLSPIR-----------------------IYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSID 150
            +  PKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP PP     G +P+ S +  +NPN F             T S L+  R                       +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+
Sbjct:  158 YQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPD----GSLPVRSLMRVNNPNRFSILHSPARNLGSGTLSQLTRFRRMLAPRVRLPFLVSGQVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 319          
BLAST of EWM26901.1 vs. NCBI_GenBank
Match: gi|585112577|gb|EWM29974.1| (hypothetical protein Naga_100383g2 [Nannochloropsis gaditana])

HSP 1 Score: 58.9214 bits (141), Expect = 8.902e-7
Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 0
Query:   22 HRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRI-YALPSRSPESLLALTA---PRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE 161
            H P+W+YR L  ++++  + L L+L VS++YGF +   H+ VT     L P  VD+ G+ P+ +TI   NPNSF  T+S S + + Y   +   +    L +   PR I+L    +      +F L  + +   G A + AVL+
Sbjct:  130 HLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGT-TPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPR-IQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQ 271          
The following BLAST results are available for this feature:
BLAST of EWM26901.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585109031|gb|EWM26901.1|3.241e-160100.00hypothetical protein Naga_100103g12 [Nannochlorops... [more]
gi|585109030|gb|EWM26900.1|2.617e-14299.50hypothetical protein Naga_100103g12 [Nannochlorops... [more]
gi|553181298|ref|XP_005853540.1|3.666e-9290.68hypothetical protein NGA_0432801 [Nannochloropsis ... [more]
gi|585109033|gb|EWM26903.1|5.058e-1739.01hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|585109034|gb|EWM26904.1|2.986e-1537.69hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|553181303|ref|XP_005853541.1|1.206e-931.93hypothetical protein NGA_0432901 [Nannochloropsis ... [more]
gi|585112577|gb|EWM29974.1|8.902e-731.94hypothetical protein Naga_100383g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3775rna3775Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications