rna3764, rna3764 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3764
Unique Name	rna3764
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2148
Alignment location	CM002461.1:1167963..1169320 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF3493
Orig transcript id	gnl\|cribi\|Naga_100284g1.704.mrna
Orig protein id	gnl\|cribi\|Naga_100284g1.704
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1167963..1169320 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100284g1	gene3625	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3764	rna3764-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26921.1	cds3755	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:1167963..1169320+
coding sequence from alignment at CM002461.1:1167963..1169320+

mRNA sequence

>rna3764 ID=rna3764|Name=rna3764|organism=Nannochloropsis gaditana|type=mRNA|length=2148bp
TGGCTTCGACGTGCACGTATATCCAGCCCCCCTCCAAGGCCAAGAGCCTT
CAACCGCAGTGCTCAACACGTCACACGATCTCTCCTTGTCTATGCTACTG
AGCTTACGGCTCTATGTTTCGTAATCTATCCCTGACAATTAACCTTTTTT
TCGTGACCCTCCAATAGTACATTGTTGTCTATAGGCAGAACTCTGTAGAG
TGTATTAGCGTGCGGAGAAGCCTTGCTGTCTTCTCGTCTCAAGCCGGGCT
CAACCACGCATGGCGCCAGCACTGGAGCTTCACCAAGCGCACAGAATGTA
CCGCAACCAAGGCAAACGGGACTCCGAGGCTTACCCGCCTTCGTCCCGGG
AGCTTGTATTAAAACTACAGGGGGAAGGCTCTATATCCTCGCCGATCCCA
TCCTCGGTCCCTCGGCGGGCCTGCACTGGGTGCGCACACTCCTGCCTATC
ACGGCAGCGGCATTACAGAGAGGCACTTTTGAAGAAGGCTGCCCAACCAC
TGGGATGCGTCTGTAAGTCTGACACGCTTTGTCACAAGAGGAGTAAGTCG
TCAATGAATAGCAGCGCTAGAGCAGCACCTTCAGTATTTTTTGCAGCTGC
CGCGACATTTGTTTGCTGTTGCTCCCTCGCATCAGCCACATATACATCGG
AATCATCTTCATTCTTCTACCCTTCCTTGCCTTCTTCCGCCTTGGCGGCA
TTCCTCCCTTCCTCTCTCCCACCTGCCGCTCCTCGACGGCGCCGCAGGGT
GCTCTCTTCTTCCTCCTCGCCTTCTGCTTTCTCCAATTCCGTCTTTGCTA
GGCAATCTGCAGCCTCACAGCGCACAGGCAGTTTGGAGATGATCAGCAGC
ATGTTCAGATGGCGGGGAGGGAAGAACGAAGACGAAGAAGAAGTGCTGGT
TAATATTGAGTCCCCGTCGGCCAATGTGCGGCGCATCTCCTCCTCAATCG
TGGTCAACAGGCCCCTGTCCGACGTATGGAAAATTCTTACGGATTACAAC
AACCTCTCGGAGTACGTCCCTAACCTGACCCAGTCGCGGCTTGTCGCCAC
TCCGCCAGGGTGGGAGGCGCGAGGAAAGAACAAGGAGGTTCGCCTTTTCC
AAGAGGGGGCTCAGACCATTGTGGGTTTCAACTTCAAGGCCTCTTTGACG
ATGGATATGGAAGAAGTATTTGAAGCTGAGGACGAAAAGCTAGGTCAGCG
TCGTATAAAATTCCGCTTGGTAGACTCGGCCATGTTCAGTGATTTCTCGG
GGGAATGGCGCCTACAATGCTACTCAAGGATGCGCACCGCTTGCGAAAAC
GAGGAATGGACTTACAGCACGAAGCTCTTCTACATGGTGAACGTGAAACC
GAAAGGCCCCGTTCCAGTGGGTGCCCTCGAATGGCGCATAAAGGAGGATG
TGCCAACTAATCTCCGAGCCGTCAAGGTCGCCTCCGAGAAGTTGCCCTGG
GATTGTGAGCAGGACCAAGCTGCCTTGGCAGCCCTTGCTGCCGGGCGTCG
GGAACAACAAGCTCGCATGACCGTGGCACAGGACTGGATGAGTGACGAGA
CTCTGGGCGCGTACATAGGGGACCTGCAAGGAGGAGGAGGTGGCGGCGTG
GATAGCAAAGGAGTGCTGCGGGTTGGGGTGGGCTCCGGAGGATCTTCGGG
AGGAAGAGAAGGAGGAAGAGGTGTGAATTCCAGAGCTTGGAGCCCGTACT
CGTATCAAAAAGGGAGGAACGAGACAGAATCTGGATCGATGTTGGATCGT
CTCTTTTTCAGGTAGCACCACTCGGACGAGTTCGGCCACAAGAAGTTAGC
AACCGTACAAGCGGATAATGGATGCAGAAATGGATCCAGAAGCTTAGGGT
GGGACTTAACAATACTGAAAACTGTCAGAGGTTTAGAAGACTGGGTGTGT
CGGAGAAGGTGTCTCTGTAGAGTTCTAGGAGAACAAAAGGAGTCAACTTT
GTTGCGGAGCACAGGGAACAGTGCAACTTTGGAGCTGGTCAGGAAGAAAA
GCGAACTGCAATCTGCAGCGCTTACTAGTGCAAGGTCAGCGTGTTTGTGA
ACAATAAAGAAGTTTTTATTGCGAAAGATATTTTCAGCGAAAGAAAATTT
AGATACCTTCTACATCAGATACCTTCTACGTTGCTTTCACGACTTACC

protein sequence of rna3764

>rna3764-protein ID=rna3764-protein|Name=rna3764|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSS
GFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDG
GDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYG
GVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALL
WNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGVEH
GRGGWDERAADSECVPRRAFGAARGR

mRNA from alignment at CM002461.1:1167963..1169320+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3764 ID=rna3764|Name=rna3764|organism=Nannochloropsis gaditana|type=mRNA|length=1358bp|location=Sequence derived from alignment at CM002461.1:1167963..1169320+ (Nannochloropsis gaditana)
ATGATTTTCAAGCATTCCTTGATTCCACAGTATAGTGCAGCTGCTCCTCC
GGTGTttgcggaaggagaaggcatgcATTGTTTGGGTTTTCCTACCGCTG
CAGCTGTGGCAGCCTGCCTGGTCGCCTTGTTTCTcctgcccacctcctct
ggcTTCCCACGACCCGCAGACTTCACGCCAAAACTCCAAGCGCCCTTCAT
AAATGGTATGCCATCATCCTCCAGTCGAAGAAATCCTTCCAGGTACGTGC
CGCCTTTGTGACCGACGTGTTATAATGTTGGAATTTATCTCTTCAAAGCG
AGAAAGTCTGAGGTGGTCAAGTGTCTTACGCTCAGCCCGTGAAAGCCTGC
CGTCTCTTCAGCATTTCCTCATCTCTATGTGTTTTCTCGTCCGCATTTAG
GGATCTGAAATGCCCTTGTTCTTAGCTGTGTCATTCGAAGCCTGCTGTGA
GCGAAATGCATATTTTTTCCCTTATCTACCTTAAAAGCCTTAATGGCACG
TACTTTCCTGGTGCTAACTTCCTTTTCATTACTTTACGCATCCGTCCACA
AGATTGATTCTATTATATGGACCTTTTGCTTCTCGTTGTTGATCTAATGC
TTTTGCTCGCTGCGCTAATCGCTCGCTTCCTTCAGCGCTGTGCGTCTCCC
TCTTAGCATGTCCTTCTCACaactttccttttccctacAATCTCTTTTAC
TAAACAGATGCGTTTCGACGCGCTTTCGCAGAAGAATTCCAGTTCTCTTG
TACCAAGAAGACGGCGGTGACGAACAGAAGGATGCTGAAGGACGAGCTCA
AAACATCTTACCAGACGAAGGAGACGTGGGAGTAGAAGAGGACTACAGCG
TTATGACTCGCCTCCGTGAGGAAGCCGAGTCTCCGTTCCGATCTCTTCGT
TTCCTTATCTACGGCGGTGTGGGAGCTTCTGGGGCGATCGGTGCGCTCAC
AGCCTTGACTGGAGCTCTGGCCGCATTCTCGGGGGTGCGGGGCGCGGTGC
CGCTGAGCGAGTCGGGAAAGGACATTGCCATCGACCTCGGGGCCATAGGG
TTGGCCGCGCTCTTGTGGAATCTAGACTCGCAAACGAAAGCTCGGAAACT
CGGCCGCCTATCCCGGGGGGCGAAAATCGCTTCCCTGAAAGTGCAGGTGC
AggatgggggcggggcgggcgagcgCCCCGTCCTAAGCCTGGCAGACTTT
CGTCGGGACCGTGGGATGGCGAGGCGCGTGGTCATTTTtgcaggcgggga
ggatgtcgTCCAGGCGGCGTTGAACACGGCaggggaggctgggatgAAAG
AGCGGCTGATTCGGAATGCGTTCCTCGTCGTGCCTTTGGTGCTGCCCGCG
GACGGTGA

Coding sequence (CDS) from alignment at CM002461.1:1167963..1169320+

>rna3764 ID=rna3764|Name=rna3764|organism=Nannochloropsis gaditana|type=CDS|length=2493bp|location=Sequence derived from alignment at CM002461.1:1167963..1169320+ (Nannochloropsis gaditana)
ATGATTTTCAAGCATTCCTTGATTCCACAGTATAGTGCAGCTGCTCCTCC
GGTGTttgcggaaggagaaggcatgcATTGTTTGGGTTTTCCTACCGCTG
CAGCTGTGGCAGCCTGCCTGGTCGCCTTGTTTCTcctgcccacctcctct
ggcTTCCCACGACCCGCAGACTTCACGCCAAAACTCCAAGCGCCCTTCAT
AAATGGTATGCCATCATCCTCCAGTCGAAGAAATCCTTCCAGATGCGTTT
CGACGCGCTTTCGCAGAAGAATTCCAGTTCTCTTGTACCAAGAAGACGGC
GGTGACGAACAGAAGGATGCTGAAGGACGAGCTCAAAACATCTTACCAGA
CGAAGGAGACGTGGGAGTAGAAGAGGACTACAGCGTTATGACTCGCCTCC
GTGAGGAAGCCGAGTCTCCGTTCCGATCTCTTCGTTTCCTTATCTACGGC
GGTGTGGGAGCTTCTGGGGCGATCGGTGCGCTCACAGCCTTGACTGGAGC
TCTGGCCGCATTCTCGGGGGTGCGGGGCGCGGTGCCGCTGAGCGAGTCGG
GAAAGGACATTGCCATCGACCTCGGGGCCATAGGGTTGGCCGCGCTCTTG
TGGAATCTAGACTCGCAAACGAAAGCTCGGAAACTCGGCCGCCTATCCCG
GGGGGCGAAAATCGCTTCCCTGAAAGTGCAGGTGCAggatgggggcgggg
cgggcgagcgCCCCGTCCTAAGCCTGGCAGACTTTCGCGGCGTTGAACAC
GGCaggggaggctgggatgAAAGAGCGGCTGATTCGGAATGCGTTCCTCG
TCGTGCCTTTGGTGCTGCCCGCGGACGGTGAATGATTTTCAAGCATTCCT
TGATTCCACAGTATAGTGCAGCTGCTCCTCCGGTGTttgcggaaggagaa
ggcatgcATTGTTTGGGTTTTCCTACCGCTGCAGCTGTGGCAGCCTGCCT
GGTCGCCTTGTTTCTcctgcccacctcctctggcTTCCCACGACCCGCAG
ACTTCACGCCAAAACTCCAAGCGCCCTTCATAAATGGTATGCCATCATCC
TCCAGTCGAAGAAATCCTTCCAGATGCGTTTCGACGCGCTTTCGCAGAAG
AATTCCAGTTCTCTTGTACCAAGAAGACGGCGGTGACGAACAGAAGGATG
CTGAAGGACGAGCTCAAAACATCTTACCAGACGAAGGAGACGTGGGAGTA
GAAGAGGACTACAGCGTTATGACTCGCCTCCGTGAGGAAGCCGAGTCTCC
GTTCCGATCTCTTCGTTTCCTTATCTACGGCGGTGTGGGAGCTTCTGGGG
CGATCGGTGCGCTCACAGCCTTGACTGGAGCTCTGGCCGCATTCTCGGGG
GTGCGGGGCGCGGTGCCGCTGAGCGAGTCGGGAAAGGACATTGCCATCGA
CCTCGGGGCCATAGGGTTGGCCGCGCTCTTGTGGAATCTAGACTCGCAAA
CGAAAGCTCGGAAACTCGGCCGCCTATCCCGGGGGGCGAAAATCGCTTCC
CTGAAAGTGCAGGTGCAggatgggggcggggcgggcgagcgCCCCGTCCT
AAGCCTGGCAGACTTTCGCGGCGTTGAACACGGCaggggaggctgggatg
AAAGAGCGGCTGATTCGGAATGCGTTCCTCGTCGTGCCTTTGGTGCTGCC
CGCGGACGGTGAATGATTTTCAAGCATTCCTTGATTCCACAGTATAGTGC
AGCTGCTCCTCCGGTGTttgcggaaggagaaggcatgcATTGTTTGGGTT
TTCCTACCGCTGCAGCTGTGGCAGCCTGCCTGGTCGCCTTGTTTCTcctg
cccacctcctctggcTTCCCACGACCCGCAGACTTCACGCCAAAACTCCA
AGCGCCCTTCATAAATGGTATGCCATCATCCTCCAGTCGAAGAAATCCTT
CCAGATGCGTTTCGACGCGCTTTCGCAGAAGAATTCCAGTTCTCTTGTAC
CAAGAAGACGGCGGTGACGAACAGAAGGATGCTGAAGGACGAGCTCAAAA
CATCTTACCAGACGAAGGAGACGTGGGAGTAGAAGAGGACTACAGCGTTA
TGACTCGCCTCCGTGAGGAAGCCGAGTCTCCGTTCCGATCTCTTCGTTTC
CTTATCTACGGCGGTGTGGGAGCTTCTGGGGCGATCGGTGCGCTCACAGC
CTTGACTGGAGCTCTGGCCGCATTCTCGGGGGTGCGGGGCGCGGTGCCGC
TGAGCGAGTCGGGAAAGGACATTGCCATCGACCTCGGGGCCATAGGGTTG
GCCGCGCTCTTGTGGAATCTAGACTCGCAAACGAAAGCTCGGAAACTCGG
CCGCCTATCCCGGGGGGCGAAAATCGCTTCCCTGAAAGTGCAGGTGCAgg
atgggggcggggcgggcgagcgCCCCGTCCTAAGCCTGGCAGACTTTCGC
GGCGTTGAACACGGCaggggaggctgggatgAAAGAGCGGCTGATTCGGA
ATGCGTTCCTCGTCGTGCCTTTGGTGCTGCCCGCGGACGGTGA

Synonyms

Publications