EWM26921.1, cds3755 (CDS) Nannochloropsis gaditana

Overview
NameEWM26921.1
Unique Namecds3755
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1167963..1168204 +
Alignment locationCM002461.1:1168670..1169163 +
Alignment locationCM002461.1:1169226..1169320 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26921.1
ProductProtein of unknown function DUF3493
Orig transcript idgnl|cribi|Naga_100284g1.704.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1167963..1168204 +
CM002461.1supercontigCM002461.1:1168670..1169163 +
CM002461.1supercontigCM002461.1:1169226..1169320 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021883DUF3493
Homology
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|585109053|gb|EWM26921.1| (Protein of unknown function DUF3493 [Nannochloropsis gaditana])

HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGVEHGRGGWDERAADSECVPRRAFGAARGR 276
            MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGVEHGRGGWDERAADSECVPRRAFGAARGR
Sbjct:    1 MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGVEHGRGGWDERAADSECVPRRAFGAARGR 276          
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|553191654|ref|XP_005855424.1| (hypothetical protein NGA_0121000 [Nannochloropsis gaditana CCMP526] >gi|422293631|gb|EKU20931.1| hypothetical protein NGA_0121000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 490.73 bits (1262), Expect = 1.540e-172
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFR 246
            MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFR
Sbjct:    1 MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFR 246          
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|546308277|ref|XP_005713622.1| (unnamed protein product [Chondrus crispus] >gi|507110019|emb|CDF33802.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 90.1225 bits (222), Expect = 9.951e-18
Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = 0
Query:  126 DYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRG 247
             YS   RLREE E+PFR  R  +Y G  AS  +GA  A    +AA  GV G  PL+E+  ++ I+L  I + ALL   + +   R+L R+SRGA+IASL+VQ      +  + VL L D RG
Sbjct:   24 QYSQRARLREETEAPFRKARMFVYAGSAASAGVGAFIAGLRIIAALIGVSGTQPLNETVPNVGINLAVITVCALLLRAEVKAGERRLERMSRGARIASLRVQ-----DSVTQQVLRLKDLRG 140          
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|873241650|emb|CEL92366.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 87.0409 bits (214), Expect = 1.744e-16
Identity = 51/122 (41.80%), Postives = 77/122 (63.11%), Query Frame = 0
Query:  124 EEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADF 245
            +E   +MT+LREE ESPFR +RF +Y    A  A+  L ALT  +AA SG+   + L E+ +++AID+ AI + A LW  D  ++  +  R+S+GAK+A+L +Q+Q    A +  V+SLAD 
Sbjct:    3 DEGQEMMTKLREEVESPFRKVRFALYIAGAAGAAVSGLVALTQTIAALSGINVEL-LPEASRNLAIDVAAIAVIAFLWRRDLISQNSRYERISQGAKLAALGLQLQ---MADDSNVVSLADL 120          
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|802716943|ref|XP_012085183.1| (protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas] >gi|643713772|gb|KDP26437.1| hypothetical protein JCGZ_17595 [Jatropha curcas])

HSP 1 Score: 77.0258 bits (188), Expect = 1.247e-12
Identity = 42/123 (34.15%), Postives = 70/123 (56.91%), Query Frame = 0
Query:  126 DYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGV 248
            D S   ++R E  SPFRS+R   Y    ASGA+G L A T  +AA +    A  + E+ K + ID+GA+ + A L+  ++  K  ++ RLSR   +++LK++V       E+ ++S++  RG+
Sbjct:   78 DVSSTAKIRSEVLSPFRSVRMFFYLAFIASGALGGLIATTQLIAALTNPSRAAEVPETLKSLGIDIGAVSIFAFLYYRENNAKQAQIARLSREESLSNLKLRV------NEKRIISVSSLRGI 194          
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|527206744|gb|EPS72221.1| (hypothetical protein M569_02529 [Genlisea aurea])

HSP 1 Score: 74.7146 bits (182), Expect = 2.219e-12
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 0
Query:  132 RLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGV 248
            ++R E  SPFRS+R   Y    ASG++G L A+T  +AA +       + E  K + IDLGA+ + A L++ ++  +  ++ RLSR   +++LKV+V       E+ ++ L+ FRG+
Sbjct:   67 KIRSEVLSPFRSVRMFFYIAFMASGSVGGLIAITQLIAALTAPSRVAEIPEILKGLGIDLGAVSIFAFLYHRENSARNAQVARLSREESLSNLKVRV------NEKRIVPLSTFRGI 177          
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|720025559|ref|XP_010263988.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 75.485 bits (184), Expect = 3.739e-12
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 0
Query:  128 SVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGV 248
            S   ++R E  SPFRS+R   Y    ASGA+G L A T  +AA +    A    E  K +AID+GA+ + A L++ +++ K  +L RLSR   +++LK+QV          V+S++  RG+
Sbjct:   72 SSTAKIRSEVLSPFRSVRMFFYLAFMASGALGGLIATTQLIAALTNSSKAAAAPEIFKGLAIDIGAVSIFAFLYSRENKAKNAQLARLSREESLSTLKLQVDPNK------VISVSSLRGI 186          
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|470112069|ref|XP_004292260.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 74.7146 bits (182), Expect = 7.281e-12
Identity = 54/170 (31.76%), Postives = 86/170 (50.59%), Query Frame = 0
Query:   80 SRCVSTRFRRRI--PVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRG 247
            S  V+T FR  I  P L  Q         ++ R+ +I+    +     D S   R+R E  +PFRS+R   Y    ASG +GAL A T  +AA +    A+   E  K + ID+GA+ L A L+  ++  K  ++ RLSR   +++LK+++       E+ V+ ++ FRG
Sbjct:   26 SCIVTTPFRSTINEPFLTPQ--------SSKQRSSSIICFASEKQSSTDTSSTARIRSEVLTPFRSVRMFFYLAFIASGGLGALIATTQLIAALTNPSRALDAPEIAKGLGIDIGAVSLFAFLYYRENTAKNAQIARLSREENLSNLKLRLD------EKRVVPVSSFRG 181          
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|1091500014|ref|XP_018717420.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X2 [Eucalyptus grandis])

HSP 1 Score: 73.9442 bits (180), Expect = 8.830e-12
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 0
Query:  132 RLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGV 248
            ++R E  SPFRS+R   Y    ASGAIG L A T  +AA +    A  + E  K + ID+GA+ + A L+  +S  K  ++ RL+R   +++LK++V       ER ++SL+  RG+
Sbjct:   80 KIRSEVLSPFRSVRMFFYLAFIASGAIGGLIATTQLIAALTNSAKADAVPEIFKGLLIDVGAVSIFAFLYYRESNAKNAQVARLTREENLSNLKLRVD------ERRIISLSSLRGL 190          
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|1147583326|ref|XP_020095481.1| (protein LOW PSII ACCUMULATION 1, chloroplastic [Ananas comosus])

HSP 1 Score: 73.9442 bits (180), Expect = 9.068e-12
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 0
Query:  132 RLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRG 247
            ++R E  SPFRS+R   Y    ASGA+G L ALT  L A +    A  L E+ + +AID+GA+ L   L+  +++ K  +L +LSR   ++ LK+++       E  ++S++D RG
Sbjct:   86 KIRSEVLSPFRSVRMFFYLAFIASGALGGLIALTRILPALANSSKAAVLPETLEGLAIDVGAVLLFTFLYTRENKAKEAQLAKLSREESLSKLKLRL------NENKIISVSDLRG 195          
The following BLAST results are available for this feature:
BLAST of EWM26921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109053|gb|EWM26921.1|0.000e+0100.00Protein of unknown function DUF3493 [Nannochlorops... [more]
gi|553191654|ref|XP_005855424.1|1.540e-172100.00hypothetical protein NGA_0121000 [Nannochloropsis ... [more]
gi|546308277|ref|XP_005713622.1|9.951e-1842.62unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|873241650|emb|CEL92366.1|1.744e-1641.80unnamed protein product [Vitrella brassicaformis C... [more]
gi|802716943|ref|XP_012085183.1|1.247e-1234.15protein LOW PSII ACCUMULATION 1, chloroplastic [Ja... [more]
gi|527206744|gb|EPS72221.1|2.219e-1234.19hypothetical protein M569_02529 [Genlisea aurea][more]
gi|720025559|ref|XP_010263988.1|3.739e-1236.36PREDICTED: protein LOW PSII ACCUMULATION 1, chloro... [more]
gi|470112069|ref|XP_004292260.1|7.281e-1231.76PREDICTED: protein LOW PSII ACCUMULATION 1, chloro... [more]
gi|1091500014|ref|XP_018717420.1|8.830e-1236.75PREDICTED: protein LOW PSII ACCUMULATION 1, chloro... [more]
gi|1147583326|ref|XP_020095481.1|9.068e-1236.21protein LOW PSII ACCUMULATION 1, chloroplastic [An... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3764rna3764Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications