EWM26921.1, cds3755 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|585109053|gb|EWM26921.1| (Protein of unknown function DUF3493 [Nannochloropsis gaditana]) HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query: 1 MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGVEHGRGGWDERAADSECVPRRAFGAARGR 276
MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGVEHGRGGWDERAADSECVPRRAFGAARGR
Sbjct: 1 MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGVEHGRGGWDERAADSECVPRRAFGAARGR 276
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|553191654|ref|XP_005855424.1| (hypothetical protein NGA_0121000 [Nannochloropsis gaditana CCMP526] >gi|422293631|gb|EKU20931.1| hypothetical protein NGA_0121000 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 490.73 bits (1262), Expect = 1.540e-172 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query: 1 MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFR 246
MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFR
Sbjct: 1 MIFKHSLIPQYSAAAPPVFAEGEGMHCLGFPTAAAVAACLVALFLLPTSSGFPRPADFTPKLQAPFINGMPSSSSRRNPSRCVSTRFRRRIPVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFR 246
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|546308277|ref|XP_005713622.1| (unnamed protein product [Chondrus crispus] >gi|507110019|emb|CDF33802.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 90.1225 bits (222), Expect = 9.951e-18 Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = 0
Query: 126 DYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRG 247
YS RLREE E+PFR R +Y G AS +GA A +AA GV G PL+E+ ++ I+L I + ALL + + R+L R+SRGA+IASL+VQ + + VL L D RG
Sbjct: 24 QYSQRARLREETEAPFRKARMFVYAGSAASAGVGAFIAGLRIIAALIGVSGTQPLNETVPNVGINLAVITVCALLLRAEVKAGERRLERMSRGARIASLRVQ-----DSVTQQVLRLKDLRG 140
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|873241650|emb|CEL92366.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 87.0409 bits (214), Expect = 1.744e-16 Identity = 51/122 (41.80%), Postives = 77/122 (63.11%), Query Frame = 0
Query: 124 EEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADF 245
+E +MT+LREE ESPFR +RF +Y A A+ L ALT +AA SG+ + L E+ +++AID+ AI + A LW D ++ + R+S+GAK+A+L +Q+Q A + V+SLAD
Sbjct: 3 DEGQEMMTKLREEVESPFRKVRFALYIAGAAGAAVSGLVALTQTIAALSGINVEL-LPEASRNLAIDVAAIAVIAFLWRRDLISQNSRYERISQGAKLAALGLQLQ---MADDSNVVSLADL 120
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|802716943|ref|XP_012085183.1| (protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas] >gi|643713772|gb|KDP26437.1| hypothetical protein JCGZ_17595 [Jatropha curcas]) HSP 1 Score: 77.0258 bits (188), Expect = 1.247e-12 Identity = 42/123 (34.15%), Postives = 70/123 (56.91%), Query Frame = 0
Query: 126 DYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGV 248
D S ++R E SPFRS+R Y ASGA+G L A T +AA + A + E+ K + ID+GA+ + A L+ ++ K ++ RLSR +++LK++V E+ ++S++ RG+
Sbjct: 78 DVSSTAKIRSEVLSPFRSVRMFFYLAFIASGALGGLIATTQLIAALTNPSRAAEVPETLKSLGIDIGAVSIFAFLYYRENNAKQAQIARLSREESLSNLKLRV------NEKRIISVSSLRGI 194
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|527206744|gb|EPS72221.1| (hypothetical protein M569_02529 [Genlisea aurea]) HSP 1 Score: 74.7146 bits (182), Expect = 2.219e-12 Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 0
Query: 132 RLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGV 248
++R E SPFRS+R Y ASG++G L A+T +AA + + E K + IDLGA+ + A L++ ++ + ++ RLSR +++LKV+V E+ ++ L+ FRG+
Sbjct: 67 KIRSEVLSPFRSVRMFFYIAFMASGSVGGLIAITQLIAALTAPSRVAEIPEILKGLGIDLGAVSIFAFLYHRENSARNAQVARLSREESLSNLKVRV------NEKRIVPLSTFRGI 177
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|720025559|ref|XP_010263988.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Nelumbo nucifera]) HSP 1 Score: 75.485 bits (184), Expect = 3.739e-12 Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 0
Query: 128 SVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGV 248
S ++R E SPFRS+R Y ASGA+G L A T +AA + A E K +AID+GA+ + A L++ +++ K +L RLSR +++LK+QV V+S++ RG+
Sbjct: 72 SSTAKIRSEVLSPFRSVRMFFYLAFMASGALGGLIATTQLIAALTNSSKAAAAPEIFKGLAIDIGAVSIFAFLYSRENKAKNAQLARLSREESLSTLKLQVDPNK------VISVSSLRGI 186
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|470112069|ref|XP_004292260.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Fragaria vesca subsp. vesca]) HSP 1 Score: 74.7146 bits (182), Expect = 7.281e-12 Identity = 54/170 (31.76%), Postives = 86/170 (50.59%), Query Frame = 0
Query: 80 SRCVSTRFRRRI--PVLLYQEDGGDEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRG 247
S V+T FR I P L Q ++ R+ +I+ + D S R+R E +PFRS+R Y ASG +GAL A T +AA + A+ E K + ID+GA+ L A L+ ++ K ++ RLSR +++LK+++ E+ V+ ++ FRG
Sbjct: 26 SCIVTTPFRSTINEPFLTPQ--------SSKQRSSSIICFASEKQSSTDTSSTARIRSEVLTPFRSVRMFFYLAFIASGGLGALIATTQLIAALTNPSRALDAPEIAKGLGIDIGAVSLFAFLYYRENTAKNAQIARLSREENLSNLKLRLD------EKRVVPVSSFRG 181
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|1091500014|ref|XP_018717420.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X2 [Eucalyptus grandis]) HSP 1 Score: 73.9442 bits (180), Expect = 8.830e-12 Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 0
Query: 132 RLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRGV 248
++R E SPFRS+R Y ASGAIG L A T +AA + A + E K + ID+GA+ + A L+ +S K ++ RL+R +++LK++V ER ++SL+ RG+
Sbjct: 80 KIRSEVLSPFRSVRMFFYLAFIASGAIGGLIATTQLIAALTNSAKADAVPEIFKGLLIDVGAVSIFAFLYYRESNAKNAQVARLTREENLSNLKLRVD------ERRIISLSSLRGL 190
BLAST of EWM26921.1 vs. NCBI_GenBank
Match: gi|1147583326|ref|XP_020095481.1| (protein LOW PSII ACCUMULATION 1, chloroplastic [Ananas comosus]) HSP 1 Score: 73.9442 bits (180), Expect = 9.068e-12 Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 0
Query: 132 RLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRG 247
++R E SPFRS+R Y ASGA+G L ALT L A + A L E+ + +AID+GA+ L L+ +++ K +L +LSR ++ LK+++ E ++S++D RG
Sbjct: 86 KIRSEVLSPFRSVRMFFYLAFIASGALGGLIALTRILPALANSSKAAVLPETLEGLAIDVGAVLLFTFLYTRENKAKEAQLAKLSREESLSKLKLRL------NENKIISVSDLRG 195 The following BLAST results are available for this feature:
BLAST of EWM26921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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