rna3762, rna3762 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3762
Unique Name	rna3762
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3432
Alignment location	CM002461.1:1162560..1164458 +

Link to JBrowse

Properties


Property Name	Value
Product	protein ariadne
Orig transcript id	gnl\|cribi\|Naga_100284g3.708.mrna
Orig protein id	gnl\|cribi\|Naga_100284g3.708
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1162560..1164458 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100284g3	gene3623	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3762	rna3762-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26925.1	cds3753	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:1162560..1164458+
coding sequence from alignment at CM002461.1:1162560..1164458+

mRNA sequence

>rna3762 ID=rna3762|Name=rna3762|organism=Nannochloropsis gaditana|type=mRNA|length=3432bp
GCAGGATACATCAGGGGGCAGCAGCGGGGATAGCATGATGGAAAATGAGG
GAGACCCGGGCAAAGGCCTCGATGTGAGTCGAACGAGTGATTACGGCGCA
ATACCTACATTCCACGATGCCGCCTTGACGCATCCTGAAGAGAGTGAAAA
TGTCTCCACGCCTACTTCTCAAGCTTTCAACACGTTGCCGTCCTCTGTCC
ACGCTTCCGACTCTGAACTCGATCACGTGTATGCAACCGTCGAGAGTGGC
AATGCACTGGCCATCAAGGACTTTCCCGTCCTCCAAACAACTTCTGCCGC
CATCCTTCCTCGCTGGATCTACAGATATTTTCCATGCCTCCGGTTCCTGC
CTACGTGGTCGTGCTTCCCCGACCCCACCCAGGGTCCTTTGCTCTCGCCA
AGACGGAATCTGGAGTTTTTCCGTGCCATCCTTTACCTTCTCGATGGCGG
GCGGAAGCAGCAATCCCACTTTCAAGACGACGCTAAATCTATGCGCTTCT
ACTACCTGCGACAGACGCTCGCATACCGGACGTGTATAATCGTGGCGTGC
ATCATGTATCTCTCCATCTCGCTTACGGAGGCCCCCAACTTCCAGATTTA
TTCGCGCAAGCGAGAACAAGTATCACGGGACACGAGCCATGGTTACGAGT
TAACATTCAACGTGATATCGGTCCTCTTTTTTGTCCTCGACATTTGGATA
CAATTTCAGGCGATGGGTAAGAAGAAGACATTTGGGTACCGTTGGACGCA
GCTTTTTGTTGTCTTACTGGCCTTCGACGTGGTGGGGATGGCTTGGCCGC
AGGCTAGGCTCTTGATGGTCACCGGCATCGTGAGATGCTACCCAATTGTA
TACTACAGCAAGAAAGCCCGAAACGCCATGTTAGACTATCTGCGGACCGT
ACCCTCCGTCATCCAGTGGATAGGCATCGAGTTTCTCTCCGTTCTTGTCT
TCGCCTGCTTCGCGGTCATTTTGTACGCGAGTGTGGACCGAGGCGGCGCC
AGCGAACAGACCGCATTCCTCTCCTTGAATCGGGCCTTCATCTCCCTCTA
TGAGCTCTCGCTGACTGTCAACGATCCAGACATTTACCTTCCATACTACA
GGATCGATGCCTTAAACGCCATTCTCTTCGTCGCTTTCTTGATATTGACC
TTTTTCCTGCTCCACAACATCATCCTTGCCTCTGTCTTCCGCATTTACTC
GGCAAAGCTCCGAGACACCGCCGTGCGACGCAACAGCTACCGAGAGTCTG
CTCTCAACCTCGCCTTCCGGGCCTTGGTGGGGGAGAACCAGGGTCCTACC
GGTAGGGTTCACAAGGATTTACTGGCCCATGTCCTGAAGAGGGTGTTTCC
CCACCACAGCAGCGAGAAAATTTCAGCCTTCATGCAGTACGCGGATCGGG
AGGACTCCAATGACGACGACCAAGACTATGACTACGACCGATTCCTTATC
CTCATGTCAGCCATCGCGGATGATTGTCTTCACGTCATCCGGCCAAGTGT
GGCCTACCCTGGTCGTCTCCACAGCTTTCTTGATGTGCTGGTCCTTGCTG
AGCTCCTAGTCGCGGTTGTCGCTGTTGCTCGGTATTGGCACATTTTTTAC
AAAATCTGGCTAGTAGCGACGCTCGCCGCATTTCGCTTCATTTTTGCACT
AGACATCATTTACGGGCTACTGCAAATCAAAGGTTTCAAGATATATCTCA
AAAGCAGCGTTCATAAATGCAAGCTCTTCGCGCTTTTGTTCTTCCTTGTC
GCACTCGTCTGCATGCTGACGAATGACAGGGTGCTTGGGGAGTCAAAAGA
GGTCAACATGACTCAGAAGGCAGCTTCCATGTTCCTTCTTTTATCCGTTT
TTGCAGACGTGGTGCGTCTGTCCACGCGCGTCCCCGAGTACGCAGCTCTA
GTGCAGGTCTTCAGAGATCTGCTCGTGCCTGCCCTCCTCAGCCAAGCCAC
CGTCATCTTTTTCCTCATGCACTTAACCTGCTACGCGGGCATGTACCTGT
TCGGCGGACGCATCTACCCGAGTCAACCCATATGGGCCACGCTGCCATTT
CCCGGTTCCCTGTACTATTTGCTCAACTTCAACACGTACCGTGAGGGAAT
GCTCACCCTCTTCATGCTGCTAGTTGTCAATAACTGGAACCAAATTTCTG
CCCAATTCGTCCGGGTCACGCATCCCGCTGCCTACCTCTTCTTCATGGCC
TATCAAGTCCTCGTGGTGACCATTGCGCTCTCCTGCGTCACCTCCTTTTT
CATCACGCATTTAAGCAACCAACTCGGAGAGGAGCTGGAGAAGGGGAGAA
AGAGAAAGGAAGGGAAAGAAGACAAGGTAGAGGGCAAGGAGAACCAAAAG
AAGAAGAAAGAAGGGACATTTTCGTGGGGTGGTTGGGGAAGCTGGCTCTC
GGCTGACAATCGAAAGGGATCCATGGACGAACTACAAGGTGCGAACCTTA
GAAGTTCGCGCTCGCGAGAAGAGAGAGGGAGGACGAAACATACGCTCTCC
GATTTGTACCTAAGAGCGGAATCATCCTTGGAACCCGCTCGCCCTCCCTC
TCTGAGCAATTCTTCTCCCTCCGGGGCCTCGAACCCGTCCCCGACCTCGC
GTCCGGCACGCTTCCGTCTGAGAAGGCGGGTAAGCAGCTGCTATTTAGCC
CTGCGCGATGAGCAGCCGGTGGCGGACGTGGAGTATCAGTGTCTTTTGGA
GGCCCTCTTGAAGGAGAAAGGGCAGGAATTTGCCTATTGCTTCATCAAGG
AGCAGCGCAACAAGTCCCACCTCGAAAGCTTCAATCGCAGCACTGGCTTC
GCGAGAATCATTCGGCCGTACCCTCAGGCTGAATCATCCCTGCTCAAAAC
ATGTGCAGATCTTTTTGGCAAGGATATGAGTAAACAGGGGAAAAAAGAGG
GAGGCAACTCAAGCGACTTGTCCACGCCATCTTCTGAAGGGAGGAGGAAA
ACGGAAGGCGGTAACGGTGACGAGATTACGGGGAAAGCGGAGGAAAAATC
GGAAACAAAACAAATTAAAGGGGCAGCTGAGGGGGCGGCGGCGGGGGAGG
AGGAGGAGATCATGGTGGAGGATGAGGAGGAAGACGCCGACGATATGGGA
GAGAAGAGAGACTGTGTCATGATTCAAGATATCATGCCTCACCCGTCCGA
GTCCTGCCGGGCCTTGTATATGAAAATCTACTTCATGTATGGGGGTGATA
ACAAACTGGCCTTCTGTCAACTGCACGAGCAGTGAACTACGGCCATCGCT
TTTATTTTGGTGGGGAACCCATTCATATATTTGCGTACATTAAAAACTGA
CTACGAGAGAAGGATAATGGCAAGACGAGACGTGCATTACATGTGGGGTA
GTGACAGTGTACATACTGGGGATGCATACTATTTTGAAAACGAAGTGGGT
AACCACATAAGTATCGCGCTGGGCGATAAGGA

protein sequence of rna3762

>rna3762-protein ID=rna3762-protein|Name=rna3762|organism=Nannochloropsis gaditana|type=polypeptide|length=409bp
MRERLAAFSCKNFNAQPPEDTPTRIDCKFLSPRFFLQKILPPEPSTYYFN
NVFKGKINKRSHGPSTNASTTLSGLSTMFHRLRRKNDDFNTKKSLSTSYL
TSHHYCPICLEWLPPKHPLRFLSLLLKREGLNFAAATACCPSGHEYCIPC
LTIYVNVSINEGRTSHETLRCPLTHCSTPFQDTLLHSLATAEAWEKHKYF
VNEAKVCQNPLLRWCPQSNCNGVARLTHAPQQDHEGIYVSATCPVCSEGF
CGNCGGDPHRSKKCDQSGNQAYAMWKKRKGDAVKPCPGCGHHIEKGIGCN
AMTCTRCRTKWCWSCGLKANACTCVGMRFAMWHEENQQFPPLHILFNGMI
IMVATAWVLVILSVCLLTSFFYGTDKMVRRILFYRRLLYETCSFVWNDVT
ELVTRPLQK

mRNA from alignment at CM002461.1:1162560..1164458+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3762 ID=rna3762|Name=rna3762|organism=Nannochloropsis gaditana|type=mRNA|length=1899bp|location=Sequence derived from alignment at CM002461.1:1162560..1164458+ (Nannochloropsis gaditana)
ACGACTATCCCCCCCAAAAATCCGAAAAGAGAATGAATAGAAGCACATAC
GGCACCCCATTTTTACCCATGGAATAGGACTGTCCTGACCATCAATATCC
TTGAGGCCCTTACATTCTATAACATGAAGAGATTATGTAAAAGGGACGTT
GTCAGCCAATCGGCATGCGAGAGCGATTGGCGGCATTTTCATGCAAGAAC
TTCAACGCGCAGCCTCCAGAAGACACGCCCACACGAATCGACTGCAAATT
CCTGTCTCCTCGTTTTTTCCTCCAGAAAATCTTACCACCTGAACCTTCCA
CGTACTATTTTAATAACGTTTTCAAAGGTAAAATTAACAAGAGATCACAT
GGACCAAGCACAAATGCTTCTACCACCCTATCAGGCCTCAGCACCATGTT
TCACCGTCTTCGAAGGAAAAATGATGACTTCAACACCAAAAAGAGCCTTT
CGACCAGTTACCTGACCAGCCATCATTATTGTCCAATTTGCCTGGAGTGG
TTGCCCCCTAAACATCCCCTGCGCtttctgtctcttcttcttAAAAGAGA
GGGTTTGAATTTCGCTGCTGCGACAGCATGCTGTCCCTCGGGGCACGAAT
ACTGCATCCCTTGCTTGACAATCTACGTCAACGTGTCCATAAATGAAGGT
AGAACAAGTCACGAGACGTTGCGGTGTCCTCTTACGCATTGCAGCACGCC
TTTCCAAGATACATTGCTCCACTCTTTGGCTACTGCTGAGGCCTGGGAAA
AGCATAAATACTTTGTAAATGAAGCGAAGGTTTGCCAGAACCCTTTATTA
CGATGGTGTCCTCAATCAAACTGTAATGGCGTAGCGAGGCTTACGCATGC
ACCACAGCAAGATCATGAAGGGATATATGTATCGGCCACTTGTCCTGTAT
GCTCTGAAGGATTTTGTGGAAACTGCGGTGGGGACCCGCATAGGTCGAAA
AAATGTGATCAATCGGGCAATCAGGCGTACGCCATGTGGAAAAAGCGGAA
AGGGGATGCTGTCAAGCCATGTCCGGGATGCGGCCACCACATTGAAAAAG
GAATAGGCTGCAATGCTATGACTTGCACGCGATGTCGGACTAAATGGTGT
TGGAGTTGCGGTTTAAAGGCGAATGCCTGCACGTGTGTCGGCATGCGCTT
TGCCATGTGGCATGAGGAGAACCAGCAGTTTCCTCCCCTGCATATTCTCT
TCAATGGGATGATTATAATGGTTGCGACGGCGTGGGTATTAGTCATCTTG
TCTGTGTGCTTGCTTACTTCGTTTTTTTACGGAACCGACAAGATGGTCAG
ACGCATCCTATTTTATCGCCGACTCTTGTACGAAACATGCAGCTTTGTCT
GGAATGATGTGACCGAGCTGGTGACCCGCCCTCTGCAAAAATAGGGTCCT
GAATTCTCAGCTGCTTGAAGAACCAAaatagagggaaggaaggagtgTCC
CTTCACTGCCTCAGTGGCGGTGAACATTCTCTTGTGGGTACTCGGATTGT
GATGCCACAAATAAGGCGCAGCGGACAGAGGCACAGGCTGCTATTATCCA
AAGATCTCAAATGCGATGTTTTGTTTTCACTGGTCTGCCTAGAGGCTTCC
AGATTGCGAATTTCTACTATGCACTCGACCCCGTTATGACACTGCATGTC
TTCCACTTCGTTATTCGCAGTCACTTCTGCAATGTGATGTCCTGATTTCT
GAGTTTGTACTTACTTCAGACAATTTGAGAGCTTTGTAACGTCGAAAGCA
AATTTACGAGTACAACGAAAGAGCATCCGCGTGCAATTATGTGAGGTAAG
TCGTGAAAGCAACGTAGAAGGTATCTGATGTAGAAGGTATCTAAATTTTC
TTTCGCTGAAAATATCTTTCGCAATAAAAACTTCTTTATTGTTCACAAA

Coding sequence (CDS) from alignment at CM002461.1:1162560..1164458+

>rna3762 ID=rna3762|Name=rna3762|organism=Nannochloropsis gaditana|type=CDS|length=1230bp|location=Sequence derived from alignment at CM002461.1:1162560..1164458+ (Nannochloropsis gaditana)
ATGCGAGAGCGATTGGCGGCATTTTCATGCAAGAACTTCAACGCGCAGCC
TCCAGAAGACACGCCCACACGAATCGACTGCAAATTCCTGTCTCCTCGTT
TTTTCCTCCAGAAAATCTTACCACCTGAACCTTCCACGTACTATTTTAAT
AACGTTTTCAAAGGTAAAATTAACAAGAGATCACATGGACCAAGCACAAA
TGCTTCTACCACCCTATCAGGCCTCAGCACCATGTTTCACCGTCTTCGAA
GGAAAAATGATGACTTCAACACCAAAAAGAGCCTTTCGACCAGTTACCTG
ACCAGCCATCATTATTGTCCAATTTGCCTGGAGTGGTTGCCCCCTAAACA
TCCCCTGCGCtttctgtctcttcttcttAAAAGAGAGGGTTTGAATTTCG
CTGCTGCGACAGCATGCTGTCCCTCGGGGCACGAATACTGCATCCCTTGC
TTGACAATCTACGTCAACGTGTCCATAAATGAAGGTAGAACAAGTCACGA
GACGTTGCGGTGTCCTCTTACGCATTGCAGCACGCCTTTCCAAGATACAT
TGCTCCACTCTTTGGCTACTGCTGAGGCCTGGGAAAAGCATAAATACTTT
GTAAATGAAGCGAAGGTTTGCCAGAACCCTTTATTACGATGGTGTCCTCA
ATCAAACTGTAATGGCGTAGCGAGGCTTACGCATGCACCACAGCAAGATC
ATGAAGGGATATATGTATCGGCCACTTGTCCTGTATGCTCTGAAGGATTT
TGTGGAAACTGCGGTGGGGACCCGCATAGGTCGAAAAAATGTGATCAATC
GGGCAATCAGGCGTACGCCATGTGGAAAAAGCGGAAAGGGGATGCTGTCA
AGCCATGTCCGGGATGCGGCCACCACATTGAAAAAGGAATAGGCTGCAAT
GCTATGACTTGCACGCGATGTCGGACTAAATGGTGTTGGAGTTGCGGTTT
AAAGGCGAATGCCTGCACGTGTGTCGGCATGCGCTTTGCCATGTGGCATG
AGGAGAACCAGCAGTTTCCTCCCCTGCATATTCTCTTCAATGGGATGATT
ATAATGGTTGCGACGGCGTGGGTATTAGTCATCTTGTCTGTGTGCTTGCT
TACTTCGTTTTTTTACGGAACCGACAAGATGGTCAGACGCATCCTATTTT
ATCGCCGACTCTTGTACGAAACATGCAGCTTTGTCTGGAATGATGTGACC
GAGCTGGTGACCCGCCCTCTGCAAAAATAG

Synonyms

Publications