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Properties
| Property Name | Value |
|---|
| Product | RNA polymerase Rpc34 |
| Orig transcript id | gnl|cribi|Naga_100284g5.706.mrna |
| Orig protein id | gnl|cribi|Naga_100284g5.706 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:1152758..1155195 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3760 ID=rna3760|Name=rna3760|organism=Nannochloropsis gaditana|type=mRNA|length=1371bp
CCACCAAACAAGCGTATTGATTGTGAAAGAATACAATCAAACATAACGAT
CAAATCACGTTTATAGGTCTGGAGCAAGAAGAAAGCGAAAGCCTTGCATG
GGAGCGGGAGAATGGAGACTTCGCGTAAAGAGACCACAGGAGCAGGTGGA
GGACAACATAAGGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTT
ATGCCTCAGCCATGCAGAGGGCTTACGCAACGAGCAACTACGGGAGCATT
TTACGGAGCGATACCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGCC
GAGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTAGTCTATCA
AGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGC
AACTGTTGGTTTACCAAGTGGTGGAAAAGGCGGGCAATAAAGGAATTTGG
CACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAAA
GATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGA
TCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGCC
AAGGAAATCACCGGCGGACCCTGGTACACGGAACACGAGTTTGACCACGA
GTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCATCAAGCAACAGC
GCAAACCTCCGTCACTGGGAATTATCGCCGACTACGTCCGAAATTCCGGC
GTTTCCAAGGTGAAGAGCGAGATCAAAAATGTAGAGAAACGAGAGTGTAG
AATGGCAGGGAGGACGAGTGATTCTTTGAGTGCGAATATGCGGCTCATTG
CTGGGTGCGAGTATGATGTCTTGCGTCTACCTGCATGCACCACTTGTGCT
CATTGCTTCTTCTCATTGTGCACAATTTAACCTTTGTACGAAATTGCATC
CCCATTTCACACCCCTTTAAGGTGGAGCTGGCTCCCGGTGAGGTCCAGCT
TATCATCAACAGCCTTGCCTACGACATGAAGATCGAGCCTGTGCAAAACA
GCCTTGTCGGCGCTCTGCCTTCCTCCGACGGGACCCCTTGCTACAAAATT
TCGCGCCAGGTCACGCCGCTCAATCACTTCACGGACTTCCCATGTGGTCG
ATGTCCTGTGCAGGCGCAATGCGAAGAAGGGGGTGAGATCTCTCCGGCAA
ACTGTCGGTACTTTAATGTGTGGCTGGATGTCAACAATGGAGCGGGGGGG
GTTGGGGGGGCGATGATCGGAGGAGGAAATGCAGGGTCGTTGGATTTTTG
AGGGCTTTGTAATCTTAGTCATTTGTCGAATGGCATTTAAAAGAAGGCGC
AAAAAGTATAGGCGAATCACT back to topprotein sequence of rna3760 >rna3760-protein ID=rna3760-protein|Name=rna3760|organism=Nannochloropsis gaditana|type=polypeptide|length=253bp
METSRKETTGAGGGQHKDESGNLREEFLSLCLSHAEGLRNEQLREHFTER
YLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLV
YQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSK
TRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYHFIKQQRKPP
SLGIIADYVRNSGVSKVELAPGEVQLIINSLAYDMKIEPVQNSLVGALPV
RNY back to topmRNA from alignment at CM002461.1:1152758..1155195+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3760 ID=rna3760|Name=rna3760|organism=Nannochloropsis gaditana|type=mRNA|length=2438bp|location=Sequence derived from alignment at CM002461.1:1152758..1155195+ (Nannochloropsis gaditana)
CCACCAAACAAGCGTATTGATTGTGAAAGAATACAATCAAACATAACGAT
CAAATCACGTTTATAGGTCtggagcaagaagaaagcgaaagCCTTGCATG
GGAGCGGGAGAATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtgga
ggacaacATAAGGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTT
ATGCCTCAGCCATGCAGAGGTAGGGAGATGCAGGCGAAGAACGCGGGGCC
CAGTAAAGATTGCTGTAAAGCAATCATTGCTTTGGTAGcattctcccttt
cccattttGCCTCGTCCATTTTCTACTTCCCAGGGCTTACGCAACGAGCA
ACTACGGGAGCATTTTACGGAGCGATACCTGCATTTAGTCCCTATCATTA
ACAGCTGTCTTGCCGAGGTATGAAATCAATTGATTGGCATTGGAGATGGG
GAAATAATTGCGGATAAAAGGGAATACTTGGAAATCCTTCCTGTGCGGCG
AGAGGAAAATGATTTCGATGAATGTTAAAGCGAAGGCAATGCCAGACTCT
ATGATTCCTACATCGTTACTTACATTATAACTCACGTCTTGCTATCCTGC
TACTTAGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTAGTCT
ATCAAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGGGTAC
GTTAATATACATAATATAAtaatatgtatatatatatttacAAGGGGTAG
AGATTGCTCGAGCATgagggaagcgaaggagaggggaatggatgatgaag
acggaggaaatgggaggTGTGGGGTGCAGGGGATTGTGAGTAGTTGTCCT
TGGTTGGCGGCTCCCTGTATAACTATCTATACTTCATATTCACGGCATCT
AGGGCGGAGCAACTGTTGGTTTACCAAGtggtggaaaaggcgggCAATAA
AGGAATTTGGCACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCGG
TGAGGCCGGGAGCTAGGATTACTGGAAACGGGAAAGGCAGATAGTAGAAG
TTAGGGGCGACAGTAGATAATGTAGGAAAAACTATGTCGTCAACTCAAGC
GATGATTTTATCTGCCATGCCTCGACTGGTTTTGTGTCGCTACCGGACTC
ACAGGCCTTGAAAAAGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAA
AGAGCACCTCTTCGATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTAC
GACCTGGAGCCGGCCAAGGAAATCACCGGCGGACCCTGGTATGGCCAGAG
GAATGGAAGCAGAGAGGAatagagaggggaagagaggggagacgggacgg
ggaagaaaagaggcgcTCTGGGAAGATGGGTATACTTCTGTACTTTACTT
GCGCTTGAAAGCTGATTTCTTGTCTTTGTCATATGTGACGTCAACGAGCT
CCGTATAACTTAAGCGCCTTCACGCCCTGAACCAGGTACACGGAACACGA
GTTTGACCACGAGTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCA
TCAAGCAACAGCGCAAACCTCCGTCACTGGGAATTATCGCCGACTACGTC
CGAAATTCCGGCGTTTCCAAGGTGAAGAGCGAGATCAAAAATGTAGAGAA
ACGAGAGTGTAGaatggcagggaggacgagtgATTCTTTGAGTGCGAATA
TGCGGCTCATTGCTGGGTGCGAGTATGATGTCTTGCGTCTACCTGCATGC
ACCACTTGTGCTCATTGCTTCTTCTCATTGTGCACAATTTAACCTTTGTA
CGAAATTGCATCCCCATTTCACACCCCTTTAAGGTGGAGCTGGCTCCCGG
TGAGGTCCAGCTTATCATCAACAGCCTTGCCTACGACATGAAGATCGAGC
CTGTGCAAAACAGCCTTGTCGGCGCTCTGCCTGTACGCAATTATTAATTC
CCTCTTTTGtgtttccctccatttccaacTCCACCCTTTATGCCCTGATG
GGCAGGCATTTTACTCTCGACAGCTACGTCATTAATgcactttcttttct
ctttgaCTTCCTCTTtaccggccttcctcccacgaccATCGCGGTCAACC
TTTTTTTCCATGTCTGCCCTCCATACCTTCCTTCAAGTCCTCCGACGGGA
CCCCTTGCTACAAAATTTCGCGCCAGGTCACGCCGCTCAATCACTTCACG
GACTTCCCATGTGGTCGATGTCCTGTGCAGGCGCAATgcgaagaaggggg
tgagATCTCTCCGGCAAACTGTCGGTACTTTAATGTGTGGCTGGATGTCA
ACAATGGAGcggggggggttgggggggcgatgatcggaggaggaaatgca
ggGTCGTTGGATTTTTGAGGGCTTTGTAATCTTAGTCATTTGTCGAATGG
CATTTAAAAGAAGGCGCAAAAAGTATAGGCGAATCACT back to topCoding sequence (CDS) from alignment at CM002461.1:1152758..1155195+ >rna3760 ID=rna3760|Name=rna3760|organism=Nannochloropsis gaditana|type=CDS|length=5334bp|location=Sequence derived from alignment at CM002461.1:1152758..1155195+ (Nannochloropsis gaditana)
ATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtggaggacaacATAA
GGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTTATGCCTCAGCC
ATGCAGAGGGCTTACGCAACGAGCAACTACGGGAGCATTTTACGGAGCGA
TACCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGCCGAGAATCTCAT
CCGATGCATGAAAACCGAAAGCAACGAACTAGTCTATCAAGCGGTGGATC
CGAATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGCAACTGTTGGTT
TACCAAGtggtggaaaaggcgggCAATAAAGGAATTTGGCACAAGGACAT
TCGGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAAAGATATTGAAAA
ACCTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGATCAGTAGCAAG
ACGCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGCCAAGGAAATCAC
CGGCGGACCCTGGTACACGGAACACGAGTTTGACCACGAGTTTATCGAAG
AACTCTCTCGCGCCATTTACCACTTCATCAAGCAACAGCGCAAACCTCCG
TCACTGGGAATTATCGCCGACTACGTCCGAAATTCCGGCGTTTCCAAGGT
GGAGCTGGCTCCCGGTGAGGTCCAGCTTATCATCAACAGCCTTGCCTACG
ACATGAAGATCGAGCCTGTGCAAAACAGCCTTGTCGGCGCTCTGCCTGTA
CGCAATTATTAAATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtgg
aggacaacATAAGGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCT
TATGCCTCAGCCATGCAGAGGGCTTACGCAACGAGCAACTACGGGAGCAT
TTTACGGAGCGATACCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGC
CGAGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTAGTCTATC
AAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAG
CAACTGTTGGTTTACCAAGtggtggaaaaggcgggCAATAAAGGAATTTG
GCACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAA
AGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCG
ATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGC
CAAGGAAATCACCGGCGGACCCTGGTACACGGAACACGAGTTTGACCACG
AGTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCATCAAGCAACAG
CGCAAACCTCCGTCACTGGGAATTATCGCCGACTACGTCCGAAATTCCGG
CGTTTCCAAGGTGGAGCTGGCTCCCGGTGAGGTCCAGCTTATCATCAACA
GCCTTGCCTACGACATGAAGATCGAGCCTGTGCAAAACAGCCTTGTCGGC
GCTCTGCCTGTACGCAATTATTAAATGGAGACTTCGCGTAAAGAGACCAc
aggagcaggtggaggacaacATAAGGACGAATCGGGAAATCTCAGAGAGG
AATTTTTGTCCTTATGCCTCAGCCATGCAGAGGGCTTACGCAACGAGCAA
CTACGGGAGCATTTTACGGAGCGATACCTGCATTTAGTCCCTATCATTAA
CAGCTGTCTTGCCGAGAATCTCATCCGATGCATGAAAACCGAAAGCAACG
AACTAGTCTATCAAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAAT
TTGGGGGCGGAGCAACTGTTGGTTTACCAAGtggtggaaaaggcgggCAA
TAAAGGAATTTGGCACAAGGACATTCGGTCACAGACCTCTTTACAGCAGC
CGGCCTTGAAAAAGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAG
AGCACCTCTTCGATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTACGA
CCTGGAGCCGGCCAAGGAAATCACCGGCGGACCCTGGTACACGGAACACG
AGTTTGACCACGAGTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTC
ATCAAGCAACAGCGCAAACCTCCGTCACTGGGAATTATCGCCGACTACGT
CCGAAATTCCGGCGTTTCCAAGGTGGAGCTGGCTCCCGGTGAGGTCCAGC
TTATCATCAACAGCCTTGCCTACGACATGAAGATCGAGCCTGTGCAAAAC
AGCCTTGTCGGCGCTCTGCCTGTACGCAATTATTAAATGGAGACTTCGCG
TAAAGAGACCAcaggagcaggtggaggacaacATAAGGACGAATCGGGAA
ATCTCAGAGAGGAATTTTTGTCCTTATGCCTCAGCCATGCAGAGGGCTTA
CGCAACGAGCAACTACGGGAGCATTTTACGGAGCGATACCTGCATTTAGT
CCCTATCATTAACAGCTGTCTTGCCGAGAATCTCATCCGATGCATGAAAA
CCGAAAGCAACGAACTAGTCTATCAAGCGGTGGATCCGAATCTGGCAGAA
AAAATGAGAAATTTGGGGGCGGAGCAACTGTTGGTTTACCAAGtggtgga
aaaggcgggCAATAAAGGAATTTGGCACAAGGACATTCGGTCACAGACCT
CTTTACAGCAGCCGGCCTTGAAAAAGATATTGAAAAACCTGGAGTCCCGT
CAGCTGGTAAAGAGCACCTCTTCGATCAGTAGCAAGACGCGCAAGCTGTA
CCTCCTCTACGACCTGGAGCCGGCCAAGGAAATCACCGGCGGACCCTGGT
ACACGGAACACGAGTTTGACCACGAGTTTATCGAAGAACTCTCTCGCGCC
ATTTACCACTTCATCAAGCAACAGCGCAAACCTCCGTCACTGGGAATTAT
CGCCGACTACGTCCGAAATTCCGGCGTTTCCAAGGTGGAGCTGGCTCCCG
GTGAGGTCCAGCTTATCATCAACAGCCTTGCCTACGACATGAAGATCGAG
CCTGTGCAAAACAGCCTTGTCGGCGCTCTGCCTGTACGCAATTATTAAAT
GGAGACTTCGCGTAAAGAGACCAcaggagcaggtggaggacaacATAAGG
ACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTTATGCCTCAGCCAT
GCAGAGGGCTTACGCAACGAGCAACTACGGGAGCATTTTACGGAGCGATA
CCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGCCGAGAATCTCATCC
GATGCATGAAAACCGAAAGCAACGAACTAGTCTATCAAGCGGTGGATCCG
AATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGCAACTGTTGGTTTA
CCAAGtggtggaaaaggcgggCAATAAAGGAATTTGGCACAAGGACATTC
GGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAAAGATATTGAAAAAC
CTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGATCAGTAGCAAGAC
GCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGCCAAGGAAATCACCG
GCGGACCCTGGTACACGGAACACGAGTTTGACCACGAGTTTATCGAAGAA
CTCTCTCGCGCCATTTACCACTTCATCAAGCAACAGCGCAAACCTCCGTC
ACTGGGAATTATCGCCGACTACGTCCGAAATTCCGGCGTTTCCAAGGTGG
AGCTGGCTCCCGGTGAGGTCCAGCTTATCATCAACAGCCTTGCCTACGAC
ATGAAGATCGAGCCTGTGCAAAACAGCCTTGTCGGCGCTCTGCCTGTACG
CAATTATTAAATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtggag
gacaacATAAGGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTTA
TGCCTCAGCCATGCAGAGGGCTTACGCAACGAGCAACTACGGGAGCATTT
TACGGAGCGATACCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGCCG
AGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTAGTCTATCAA
GCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGCA
ACTGTTGGTTTACCAAGtggtggaaaaggcgggCAATAAAGGAATTTGGC
ACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAAAG
ATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGAT
CAGTAGCAAGACGCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGCCA
AGGAAATCACCGGCGGACCCTGGTACACGGAACACGAGTTTGACCACGAG
TTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCATCAAGCAACAGCG
CAAACCTCCGTCACTGGGAATTATCGCCGACTACGTCCGAAATTCCGGCG
TTTCCAAGGTGGAGCTGGCTCCCGGTGAGGTCCAGCTTATCATCAACAGC
CTTGCCTACGACATGAAGATCGAGCCTGTGCAAAACAGCCTTGTCGGCGC
TCTGCCTGTACGCAATTATTAAATGGAGACTTCGCGTAAAGAGACCAcag
gagcaggtggaggacaacATAAGGACGAATCGGGAAATCTCAGAGAGGAA
TTTTTGTCCTTATGCCTCAGCCATGCAGAGGGCTTACGCAACGAGCAACT
ACGGGAGCATTTTACGGAGCGATACCTGCATTTAGTCCCTATCATTAACA
GCTGTCTTGCCGAGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAA
CTAGTCTATCAAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTT
GGGGGCGGAGCAACTGTTGGTTTACCAAGtggtggaaaaggcgggCAATA
AAGGAATTTGGCACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCG
GCCTTGAAAAAGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAGAG
CACCTCTTCGATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTACGACC
TGGAGCCGGCCAAGGAAATCACCGGCGGACCCTGGTACACGGAACACGAG
TTTGACCACGAGTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCAT
CAAGCAACAGCGCAAACCTCCGTCACTGGGAATTATCGCCGACTACGTCC
GAAATTCCGGCGTTTCCAAGGTGGAGCTGGCTCCCGGTGAGGTCCAGCTT
ATCATCAACAGCCTTGCCTACGACATGAAGATCGAGCCTGTGCAAAACAG
CCTTGTCGGCGCTCTGCCTGTACGCAATTATTAA back to top
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