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Properties
| Property Name | Value |
|---|
| Product | RNA polymerase Rpc34 |
| Orig transcript id | gnl|cribi|Naga_100284g5.705.mrna |
| Orig protein id | gnl|cribi|Naga_100284g5.705 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:1152758..1155195 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3759 ID=rna3759|Name=rna3759|organism=Nannochloropsis gaditana|type=mRNA|length=1576bp
CCACCAAACAAGCGTATTGATTGTGAAAGAATACAATCAAACATAACGAT
CAAATCACGTTTATAGGTCTGGAGCAAGAAGAAAGCGAAAGCCTTGCATG
GGAGCGGGAGAATGGAGACTTCGCGTAAAGAGACCACAGGAGCAGGTGGA
GGACAACATAAGGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTT
ATGCCTCAGCCATGCAGAGGGCTTACGCAACGAGCAACTACGGGAGCATT
TTACGGAGCGATACCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGCC
GAGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTAGTCTATCA
AGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGC
AACTGTTGGTTTACCAAGTGGTGGAAAAGGCGGGCAATAAAGGAATTTGG
CACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAAA
GATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGA
TCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGCC
AAGGAAATCACCGGCGGACCCTGGTACACGGAACACGAGTTTGACCACGA
GTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCATCAAGCAACAGC
GCAAACCTCCGTCACTGGGAATTATCGCCGACTACGTCCGAAATTCCGGC
GTTTCCAAGGTGAAGAGCGAGATCAAAAATGTAGAGAAACGAGAGTGTAG
AATGGCAGGGAGGACGAGTGATTCTTTGAGTGCGAATATGCGGCTCATTG
CTGGGTGCGAGTATGATGTCTTGCGTCTACCTGCATGCACCACTTGTGCT
CATTGCTTCTTCTCATTGTGCACAATTTAACCTTTGTACGAAATTGCATC
CCCATTTCACACCCCTTTAAGGTGGAGCTGGCTCCCGGTGAGGTCCAGCT
TATCATCAACAGCCTTGCCTACGACATGAAGATCGAGCCTGTGCAAAACA
GCCTTGTCGGCGCTCTGCCTGTACGCAATTATTAATTCCCTCTTTTGTGT
TTCCCTCCATTTCCAACTCCACCCTTTATGCCCTGATGGGCAGGCATTTT
ACTCTCGACAGCTACGTCATTAATGCACTTTCTTTTCTCTTTGACTTCCT
CTTTACCGGCCTTCCTCCCACGACCATCGCGGTCAACCTTTTTTTCCATG
TCTGCCCTCCATACCTTCCTTCAAGTCCTCCGACGGGACCCCTTGCTACA
AAATTTCGCGCCAGGTCACGCCGCTCAATCACTTCACGGACTTCCCATGT
GGTCGATGTCCTGTGCAGGCGCAATGCGAAGAAGGGGGTGAGATCTCTCC
GGCAAACTGTCGGTACTTTAATGTGTGGCTGGATGTCAACAATGGAGCGG
GGGGGGTTGGGGGGGCGATGATCGGAGGAGGAAATGCAGGGTCGTTGGAT
TTTTGAGGGCTTTGTAATCTTAGTCATTTGTCGAATGGCATTTAAAAGAA
GGCGCAAAAAGTATAGGCGAATCACT back to topprotein sequence of rna3759 >rna3759-protein ID=rna3759-protein|Name=rna3759|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
METSRKETTGAGGGQHKDESGNLREEFLSLCLSHAEGLRNEQLREHFTER
YLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLV
YQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSK
TRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYHFIKQQRKPP
SLGIIADYVRNSGVSKVKSEIKNVEKRECRMAGRTSDSLSANMRLIAGCE
YDVLRLPACTTCAHCFFSLCTI back to topmRNA from alignment at CM002461.1:1152758..1155195+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3759 ID=rna3759|Name=rna3759|organism=Nannochloropsis gaditana|type=mRNA|length=2438bp|location=Sequence derived from alignment at CM002461.1:1152758..1155195+ (Nannochloropsis gaditana)
CCACCAAACAAGCGTATTGATTGTGAAAGAATACAATCAAACATAACGAT
CAAATCACGTTTATAGGTCtggagcaagaagaaagcgaaagCCTTGCATG
GGAGCGGGAGAATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtgga
ggacaacATAAGGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTT
ATGCCTCAGCCATGCAGAGGTAGGGAGATGCAGGCGAAGAACGCGGGGCC
CAGTAAAGATTGCTGTAAAGCAATCATTGCTTTGGTAGcattctcccttt
cccattttGCCTCGTCCATTTTCTACTTCCCAGGGCTTACGCAACGAGCA
ACTACGGGAGCATTTTACGGAGCGATACCTGCATTTAGTCCCTATCATTA
ACAGCTGTCTTGCCGAGGTATGAAATCAATTGATTGGCATTGGAGATGGG
GAAATAATTGCGGATAAAAGGGAATACTTGGAAATCCTTCCTGTGCGGCG
AGAGGAAAATGATTTCGATGAATGTTAAAGCGAAGGCAATGCCAGACTCT
ATGATTCCTACATCGTTACTTACATTATAACTCACGTCTTGCTATCCTGC
TACTTAGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTAGTCT
ATCAAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGGGTAC
GTTAATATACATAATATAAtaatatgtatatatatatttacAAGGGGTAG
AGATTGCTCGAGCATgagggaagcgaaggagaggggaatggatgatgaag
acggaggaaatgggaggTGTGGGGTGCAGGGGATTGTGAGTAGTTGTCCT
TGGTTGGCGGCTCCCTGTATAACTATCTATACTTCATATTCACGGCATCT
AGGGCGGAGCAACTGTTGGTTTACCAAGtggtggaaaaggcgggCAATAA
AGGAATTTGGCACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCGG
TGAGGCCGGGAGCTAGGATTACTGGAAACGGGAAAGGCAGATAGTAGAAG
TTAGGGGCGACAGTAGATAATGTAGGAAAAACTATGTCGTCAACTCAAGC
GATGATTTTATCTGCCATGCCTCGACTGGTTTTGTGTCGCTACCGGACTC
ACAGGCCTTGAAAAAGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAA
AGAGCACCTCTTCGATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTAC
GACCTGGAGCCGGCCAAGGAAATCACCGGCGGACCCTGGTATGGCCAGAG
GAATGGAAGCAGAGAGGAatagagaggggaagagaggggagacgggacgg
ggaagaaaagaggcgcTCTGGGAAGATGGGTATACTTCTGTACTTTACTT
GCGCTTGAAAGCTGATTTCTTGTCTTTGTCATATGTGACGTCAACGAGCT
CCGTATAACTTAAGCGCCTTCACGCCCTGAACCAGGTACACGGAACACGA
GTTTGACCACGAGTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCA
TCAAGCAACAGCGCAAACCTCCGTCACTGGGAATTATCGCCGACTACGTC
CGAAATTCCGGCGTTTCCAAGGTGAAGAGCGAGATCAAAAATGTAGAGAA
ACGAGAGTGTAGaatggcagggaggacgagtgATTCTTTGAGTGCGAATA
TGCGGCTCATTGCTGGGTGCGAGTATGATGTCTTGCGTCTACCTGCATGC
ACCACTTGTGCTCATTGCTTCTTCTCATTGTGCACAATTTAACCTTTGTA
CGAAATTGCATCCCCATTTCACACCCCTTTAAGGTGGAGCTGGCTCCCGG
TGAGGTCCAGCTTATCATCAACAGCCTTGCCTACGACATGAAGATCGAGC
CTGTGCAAAACAGCCTTGTCGGCGCTCTGCCTGTACGCAATTATTAATTC
CCTCTTTTGtgtttccctccatttccaacTCCACCCTTTATGCCCTGATG
GGCAGGCATTTTACTCTCGACAGCTACGTCATTAATgcactttcttttct
ctttgaCTTCCTCTTtaccggccttcctcccacgaccATCGCGGTCAACC
TTTTTTTCCATGTCTGCCCTCCATACCTTCCTTCAAGTCCTCCGACGGGA
CCCCTTGCTACAAAATTTCGCGCCAGGTCACGCCGCTCAATCACTTCACG
GACTTCCCATGTGGTCGATGTCCTGTGCAGGCGCAATgcgaagaaggggg
tgagATCTCTCCGGCAAACTGTCGGTACTTTAATGTGTGGCTGGATGTCA
ACAATGGAGcggggggggttgggggggcgatgatcggaggaggaaatgca
ggGTCGTTGGATTTTTGAGGGCTTTGTAATCTTAGTCATTTGTCGAATGG
CATTTAAAAGAAGGCGCAAAAAGTATAGGCGAATCACT back to topCoding sequence (CDS) from alignment at CM002461.1:1152758..1155195+ >rna3759 ID=rna3759|Name=rna3759|organism=Nannochloropsis gaditana|type=CDS|length=4914bp|location=Sequence derived from alignment at CM002461.1:1152758..1155195+ (Nannochloropsis gaditana)
ATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtggaggacaacATAA
GGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTTATGCCTCAGCC
ATGCAGAGGGCTTACGCAACGAGCAACTACGGGAGCATTTTACGGAGCGA
TACCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGCCGAGAATCTCAT
CCGATGCATGAAAACCGAAAGCAACGAACTAGTCTATCAAGCGGTGGATC
CGAATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGCAACTGTTGGTT
TACCAAGtggtggaaaaggcgggCAATAAAGGAATTTGGCACAAGGACAT
TCGGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAAAGATATTGAAAA
ACCTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGATCAGTAGCAAG
ACGCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGCCAAGGAAATCAC
CGGCGGACCCTGGTACACGGAACACGAGTTTGACCACGAGTTTATCGAAG
AACTCTCTCGCGCCATTTACCACTTCATCAAGCAACAGCGCAAACCTCCG
TCACTGGGAATTATCGCCGACTACGTCCGAAATTCCGGCGTTTCCAAGGT
GAAGAGCGAGATCAAAAATGTAGAGAAACGAGAGTGTAGaatggcaggga
ggacgagtgATTCTTTGAGTGCGAATATGCGGCTCATTGCTGGGTGCGAG
TATGATGTCTTGCGTCTACCTGCATGCACCACTTGTGCTCATTGCTTCTT
CTCATTGTGCACAATTTAAATGGAGACTTCGCGTAAAGAGACCAcaggag
caggtggaggacaacATAAGGACGAATCGGGAAATCTCAGAGAGGAATTT
TTGTCCTTATGCCTCAGCCATGCAGAGGGCTTACGCAACGAGCAACTACG
GGAGCATTTTACGGAGCGATACCTGCATTTAGTCCCTATCATTAACAGCT
GTCTTGCCGAGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTA
GTCTATCAAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGG
GGCGGAGCAACTGTTGGTTTACCAAGtggtggaaaaggcgggCAATAAAG
GAATTTGGCACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCGGCC
TTGAAAAAGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAGAGCAC
CTCTTCGATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTACGACCTGG
AGCCGGCCAAGGAAATCACCGGCGGACCCTGGTACACGGAACACGAGTTT
GACCACGAGTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCATCAA
GCAACAGCGCAAACCTCCGTCACTGGGAATTATCGCCGACTACGTCCGAA
ATTCCGGCGTTTCCAAGGTGAAGAGCGAGATCAAAAATGTAGAGAAACGA
GAGTGTAGaatggcagggaggacgagtgATTCTTTGAGTGCGAATATGCG
GCTCATTGCTGGGTGCGAGTATGATGTCTTGCGTCTACCTGCATGCACCA
CTTGTGCTCATTGCTTCTTCTCATTGTGCACAATTTAAATGGAGACTTCG
CGTAAAGAGACCAcaggagcaggtggaggacaacATAAGGACGAATCGGG
AAATCTCAGAGAGGAATTTTTGTCCTTATGCCTCAGCCATGCAGAGGGCT
TACGCAACGAGCAACTACGGGAGCATTTTACGGAGCGATACCTGCATTTA
GTCCCTATCATTAACAGCTGTCTTGCCGAGAATCTCATCCGATGCATGAA
AACCGAAAGCAACGAACTAGTCTATCAAGCGGTGGATCCGAATCTGGCAG
AAAAAATGAGAAATTTGGGGGCGGAGCAACTGTTGGTTTACCAAGtggtg
gaaaaggcgggCAATAAAGGAATTTGGCACAAGGACATTCGGTCACAGAC
CTCTTTACAGCAGCCGGCCTTGAAAAAGATATTGAAAAACCTGGAGTCCC
GTCAGCTGGTAAAGAGCACCTCTTCGATCAGTAGCAAGACGCGCAAGCTG
TACCTCCTCTACGACCTGGAGCCGGCCAAGGAAATCACCGGCGGACCCTG
GTACACGGAACACGAGTTTGACCACGAGTTTATCGAAGAACTCTCTCGCG
CCATTTACCACTTCATCAAGCAACAGCGCAAACCTCCGTCACTGGGAATT
ATCGCCGACTACGTCCGAAATTCCGGCGTTTCCAAGGTGAAGAGCGAGAT
CAAAAATGTAGAGAAACGAGAGTGTAGaatggcagggaggacgagtgATT
CTTTGAGTGCGAATATGCGGCTCATTGCTGGGTGCGAGTATGATGTCTTG
CGTCTACCTGCATGCACCACTTGTGCTCATTGCTTCTTCTCATTGTGCAC
AATTTAAATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtggaggac
aacATAAGGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTTATGC
CTCAGCCATGCAGAGGGCTTACGCAACGAGCAACTACGGGAGCATTTTAC
GGAGCGATACCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGCCGAGA
ATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTAGTCTATCAAGCG
GTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGCAACT
GTTGGTTTACCAAGtggtggaaaaggcgggCAATAAAGGAATTTGGCACA
AGGACATTCGGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAAAGATA
TTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGATCAG
TAGCAAGACGCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGCCAAGG
AAATCACCGGCGGACCCTGGTACACGGAACACGAGTTTGACCACGAGTTT
ATCGAAGAACTCTCTCGCGCCATTTACCACTTCATCAAGCAACAGCGCAA
ACCTCCGTCACTGGGAATTATCGCCGACTACGTCCGAAATTCCGGCGTTT
CCAAGGTGAAGAGCGAGATCAAAAATGTAGAGAAACGAGAGTGTAGaatg
gcagggaggacgagtgATTCTTTGAGTGCGAATATGCGGCTCATTGCTGG
GTGCGAGTATGATGTCTTGCGTCTACCTGCATGCACCACTTGTGCTCATT
GCTTCTTCTCATTGTGCACAATTTAAATGGAGACTTCGCGTAAAGAGACC
AcaggagcaggtggaggacaacATAAGGACGAATCGGGAAATCTCAGAGA
GGAATTTTTGTCCTTATGCCTCAGCCATGCAGAGGGCTTACGCAACGAGC
AACTACGGGAGCATTTTACGGAGCGATACCTGCATTTAGTCCCTATCATT
AACAGCTGTCTTGCCGAGAATCTCATCCGATGCATGAAAACCGAAAGCAA
CGAACTAGTCTATCAAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAA
ATTTGGGGGCGGAGCAACTGTTGGTTTACCAAGtggtggaaaaggcgggC
AATAAAGGAATTTGGCACAAGGACATTCGGTCACAGACCTCTTTACAGCA
GCCGGCCTTGAAAAAGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAA
AGAGCACCTCTTCGATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTAC
GACCTGGAGCCGGCCAAGGAAATCACCGGCGGACCCTGGTACACGGAACA
CGAGTTTGACCACGAGTTTATCGAAGAACTCTCTCGCGCCATTTACCACT
TCATCAAGCAACAGCGCAAACCTCCGTCACTGGGAATTATCGCCGACTAC
GTCCGAAATTCCGGCGTTTCCAAGGTGAAGAGCGAGATCAAAAATGTAGA
GAAACGAGAGTGTAGaatggcagggaggacgagtgATTCTTTGAGTGCGA
ATATGCGGCTCATTGCTGGGTGCGAGTATGATGTCTTGCGTCTACCTGCA
TGCACCACTTGTGCTCATTGCTTCTTCTCATTGTGCACAATTTAAATGGA
GACTTCGCGTAAAGAGACCAcaggagcaggtggaggacaacATAAGGACG
AATCGGGAAATCTCAGAGAGGAATTTTTGTCCTTATGCCTCAGCCATGCA
GAGGGCTTACGCAACGAGCAACTACGGGAGCATTTTACGGAGCGATACCT
GCATTTAGTCCCTATCATTAACAGCTGTCTTGCCGAGAATCTCATCCGAT
GCATGAAAACCGAAAGCAACGAACTAGTCTATCAAGCGGTGGATCCGAAT
CTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGCAACTGTTGGTTTACCA
AGtggtggaaaaggcgggCAATAAAGGAATTTGGCACAAGGACATTCGGT
CACAGACCTCTTTACAGCAGCCGGCCTTGAAAAAGATATTGAAAAACCTG
GAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGATCAGTAGCAAGACGCG
CAAGCTGTACCTCCTCTACGACCTGGAGCCGGCCAAGGAAATCACCGGCG
GACCCTGGTACACGGAACACGAGTTTGACCACGAGTTTATCGAAGAACTC
TCTCGCGCCATTTACCACTTCATCAAGCAACAGCGCAAACCTCCGTCACT
GGGAATTATCGCCGACTACGTCCGAAATTCCGGCGTTTCCAAGGTGAAGA
GCGAGATCAAAAATGTAGAGAAACGAGAGTGTAGaatggcagggaggacg
agtgATTCTTTGAGTGCGAATATGCGGCTCATTGCTGGGTGCGAGTATGA
TGTCTTGCGTCTACCTGCATGCACCACTTGTGCTCATTGCTTCTTCTCAT
TGTGCACAATTTAA back to top
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