rna3757, rna3757 (mRNA) Nannochloropsis gaditana

Overview
Namerna3757
Unique Namerna3757
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length896
Alignment locationCM002461.1:1150437..1152505 +

Link to JBrowse

Properties
Property NameValue
Productcoatomer subunit epsilon
Orig transcript idgnl|cribi|Naga_100284g6.702.mrna
Orig protein idgnl|cribi|Naga_100284g6.702
GeneCPC22
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1150437..1152505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CPC22gene3620Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3757rna3757-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26919.1cds3748Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3757 ID=rna3757|Name=rna3757|organism=Nannochloropsis gaditana|type=mRNA|length=896bp
TTGAGCGATGATGGGTGCCCTGTTCCGTACTTCCCTACATCCCTCGCAAG
GTATTTGCTCATAGAACACAATAACACAGAGGCAAGCTAATATGGCGGAG
CCTGATGATCTCTATACCTTGCGCCAGGAGTTTTACGTGGGTAATTTTCA
GGCCGCTATTAACGAGGGTACCTCCTTAGGGAGAGTGAGCCCCGACCTTG
AAACAGAGAGGGCAGAGTTCGTCTACCGTGCGCGTTTGGGCCTAAAGGAG
TACGACGTGATTTTTGGCGAAGTGAAGGAGGGCGGGGACACGCCCATCGG
TAAGGCTCGACGGGGATGGAGGGGAGCTCAGGGACTGAATTGGGGACCTT
GGTGAACATATATGGAGAGGGAAGACTTCAGGATGCAAGGGGAGCGTACG
GTTGCCACCCCAAAAACGGACAATTCCTTGCCTTACCTCGTCCGCTCCCG
GCACTCTCACCTTCCCCAATTGATCCCGCCCGGGCTTTTTTCGCGCCATT
TTCAATCAGCCCTGCAAGCCGTCCGCTGGTTCGCTGAATACGAGGCCCAC
CCCGAGCAGCGTGAGGCCGTCGTCGGAAAATTTCAGACATCTCTTCAAGA
GACTGCCACGGCCTCCTGCCCCTCCCTCCAAACCATGGCAGCGATTATCT
TCCTTAAAGAGGGACTTGTCAAGGATGCCCTTAGGGCCGTGCATCGAGGC
ACCACCCTCGAACAGTAGGAAGGGGGGAAGAAGGGAGGGAGGGCGGAAGG
GAGGGAGGGAGGGACCTCGGATGTAGGACGTAACTGACAAGGAGTGGCTT
CTCTCACGAGCAGGCGCGCCTTGATGACGGCCATCTACCTGCGTATGGAC
CGGCTCGACCACGTAAGCTCCCTCTTCCCTCTTCCTTCCTCTTCTC
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protein sequence of rna3757

>rna3757-protein ID=rna3757-protein|Name=rna3757|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNG
LGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPET
VAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA
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mRNA from alignment at CM002461.1:1150437..1152505+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3757 ID=rna3757|Name=rna3757|organism=Nannochloropsis gaditana|type=mRNA|length=2069bp|location=Sequence derived from alignment at CM002461.1:1150437..1152505+ (Nannochloropsis gaditana)
tctctctctctctctctctctctctctctctctttcctctttgccCTCTT
TCATGCCTTCTGTTACGCGcctacccccccctccccccctcgcacGCTCC
CTAGGCTCAGAAGCAGCTGAAGCTCATGCAGGCCTCGGACGAAGACGCCA
CCCTCACTCAGATGACGGGCGCTTGGGTTGATCTCGCCCAGGTGAGAAga
atgagggaagaggcgccATTCAACGCCCTAAATTTTATTGCCAGGCATTT
TGCCTCGTGCCCTGCGTCCTTGCTGCCTCACCCCCTTCGACCTCCCTAGA
CGGCGCCTCACCCTctatcctttcctcctcccctcccttccttctccctc
ctcgcaggGCGGCACGGGCTACCGTGACGCGCAGCTACTCTTTCAAGAGC
TGGTCGCCAAATACGGCAACAGCGCCCTGCTCTTGAAcggtgggagaagg
cggggtggaatgtcgaggaagggagatgaggaggggagggacgggatgag
ggagaaggcgaggggggcggggggctctGGTCGTTGCGTACATGTGATCT
TATGCTTTTCATTGCTTGACTTTCCCAGCCTTTGTTACATTCCATACAAT
ATTGAGGCTcacttctctctctcccctccttccctccctcaccacaGGGC
TGGGGGTCTCTCTCCTTCATCAAGGTTTGTACGAGGAAGCCGACAAATAC
CTCGCACAATGTCTCCGAGAGGTAAGAAGAAAGAATATTTTAAGGAATTA
GATATGTCTGCAGGGTGTATGATCAACAgatgaagagagaggggacaGAT
GAAGCAGGAAGCGACGGTGCTTTTGAGTTGGTTTTATAAAAAACCGATAG
CGCGGTGCGAACAAGTCGAGGACAAAACTCGTGAATTTCGATCTCGATGt
ttttccttgcccttcaTGTCTAcaacccttttccctcctcccctccccag
gaCCCCGACAAGAGCAACGCCGACACCCTCATAAACCTTATCGCCACGGC
CCAGCACTTACACAAACCCCCTGAGACGGTGGCCAAGCTCTtgaggtagg
aaggaggcatgcgGAGAAAGCTAGGTCTATACACAGAACCGAGACTCAGT
CTATCGGCGTGCATGATTTCTCGCTTTTCCCATCATCTTCCTACAatttc
ccgctctccctaCGGACAGCCAATTGCAAAAGGTGGCACCCGACCACCCT
TACGTCCAAAATCTTGGCACTTTAGAAGGCGCTTTTGACCGTCTCCAGGC
TCAGTTCGCCTCCCATATCGTGAACGCATAGGGAAGGACTTCAAatgtgg
cgggagggatggagggcagAGCAGGCAGGAGTCCTCACATGAGGTAAATG
ATGccaagagaagaaagaaattcTCAATAGAAATAATGCGTATTGAGACC
TATCTTCCTGTTCCGTTTGCTGATGACACGTAATTGCTTTATCATGCTCT
GTCTCAGTACCCCTCTGATCATCTTGTCGGGGCttgtggaagggagggta
ggcGCTGACGCGTTGGAGGCGGCCAATTGGGAAGACGAAGTTTATCGGCT
TTTGGAATTTCAAGCGGTGAGTGCAGGAACGAAGGGGGTTGGGTAGTGAT
GCATGAGTCTGGGCGGATGGAAGATAGATTAGCGAGCTCCCGTCCGACGT
GCTCAGGCGGAGACGATATTTGGATTGAATTTGCTGTTGTAACAGAAGAT
GGATGCACACGGTTCTCCTGATATATGGTTTTGACCTCATCTGTTGTCAT
AGTTCCAACATGTTCCACATCCACTCTTGGTCTTTCTTGGCTTTCGCTGT
TTTCCTTCTTGGATCTCCTCTTCTTATCTATGACCTCGCGACGTTTCCTG
TCAAGGGCGTCGCGAGCCCGTGCTAGCGCCGCCAAGATATTTTCGGCCCA
CGCATCCATGCCGTCGGGATCCATAACACGGCTGTGAAATTTAAGAAATT
CAAGTGTTTTACAAAAAGTAAGTGTTGTTCCTTCGGTGGCGGGGCAAAGC
AGCTTTAAAAAGAGACTACCTGGACTAGTGTTCGTGACTGTGTGGCAGTC
GCACGCAACACAAGTACGG
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Coding sequence (CDS) from alignment at CM002461.1:1150437..1152505+

>rna3757 ID=rna3757|Name=rna3757|organism=Nannochloropsis gaditana|type=CDS|length=2145bp|location=Sequence derived from alignment at CM002461.1:1150437..1152505+ (Nannochloropsis gaditana)
ATGCAGGCCTCGGACGAAGACGCCACCCTCACTCAGATGACGGGCGCTTG
GGTTGATCTCGCCCAGgGCGGCACGGGCTACCGTGACGCGCAGCTACTCT
TTCAAGAGCTGGTCGCCAAATACGGCAACAGCGCCCTGCTCTTGAAcgGG
CTGGGGGTCTCTCTCCTTCATCAAGGTTTGTACGAGGAAGCCGACAAATA
CCTCGCACAATGTCTCCGAGAGgaCCCCGACAAGAGCAACGCCGACACCC
TCATAAACCTTATCGCCACGGCCCAGCACTTACACAAACCCCCTGAGACG
GTGGCCAAGCTCTtgagCCAATTGCAAAAGGTGGCACCCGACCACCCTTA
CGTCCAAAATCTTGGCACTTTAGAAGGCGCTTTTGACCGTCTCCAGGCTC
AGTTCGCCTCCCATATCGTGAACGCATAGATGCAGGCCTCGGACGAAGAC
GCCACCCTCACTCAGATGACGGGCGCTTGGGTTGATCTCGCCCAGgGCGG
CACGGGCTACCGTGACGCGCAGCTACTCTTTCAAGAGCTGGTCGCCAAAT
ACGGCAACAGCGCCCTGCTCTTGAAcgGGCTGGGGGTCTCTCTCCTTCAT
CAAGGTTTGTACGAGGAAGCCGACAAATACCTCGCACAATGTCTCCGAGA
GgaCCCCGACAAGAGCAACGCCGACACCCTCATAAACCTTATCGCCACGG
CCCAGCACTTACACAAACCCCCTGAGACGGTGGCCAAGCTCTtgagCCAA
TTGCAAAAGGTGGCACCCGACCACCCTTACGTCCAAAATCTTGGCACTTT
AGAAGGCGCTTTTGACCGTCTCCAGGCTCAGTTCGCCTCCCATATCGTGA
ACGCATAGATGCAGGCCTCGGACGAAGACGCCACCCTCACTCAGATGACG
GGCGCTTGGGTTGATCTCGCCCAGgGCGGCACGGGCTACCGTGACGCGCA
GCTACTCTTTCAAGAGCTGGTCGCCAAATACGGCAACAGCGCCCTGCTCT
TGAAcgGGCTGGGGGTCTCTCTCCTTCATCAAGGTTTGTACGAGGAAGCC
GACAAATACCTCGCACAATGTCTCCGAGAGgaCCCCGACAAGAGCAACGC
CGACACCCTCATAAACCTTATCGCCACGGCCCAGCACTTACACAAACCCC
CTGAGACGGTGGCCAAGCTCTtgagCCAATTGCAAAAGGTGGCACCCGAC
CACCCTTACGTCCAAAATCTTGGCACTTTAGAAGGCGCTTTTGACCGTCT
CCAGGCTCAGTTCGCCTCCCATATCGTGAACGCATAGATGCAGGCCTCGG
ACGAAGACGCCACCCTCACTCAGATGACGGGCGCTTGGGTTGATCTCGCC
CAGgGCGGCACGGGCTACCGTGACGCGCAGCTACTCTTTCAAGAGCTGGT
CGCCAAATACGGCAACAGCGCCCTGCTCTTGAAcgGGCTGGGGGTCTCTC
TCCTTCATCAAGGTTTGTACGAGGAAGCCGACAAATACCTCGCACAATGT
CTCCGAGAGgaCCCCGACAAGAGCAACGCCGACACCCTCATAAACCTTAT
CGCCACGGCCCAGCACTTACACAAACCCCCTGAGACGGTGGCCAAGCTCT
tgagCCAATTGCAAAAGGTGGCACCCGACCACCCTTACGTCCAAAATCTT
GGCACTTTAGAAGGCGCTTTTGACCGTCTCCAGGCTCAGTTCGCCTCCCA
TATCGTGAACGCATAGATGCAGGCCTCGGACGAAGACGCCACCCTCACTC
AGATGACGGGCGCTTGGGTTGATCTCGCCCAGgGCGGCACGGGCTACCGT
GACGCGCAGCTACTCTTTCAAGAGCTGGTCGCCAAATACGGCAACAGCGC
CCTGCTCTTGAAcgGGCTGGGGGTCTCTCTCCTTCATCAAGGTTTGTACG
AGGAAGCCGACAAATACCTCGCACAATGTCTCCGAGAGgaCCCCGACAAG
AGCAACGCCGACACCCTCATAAACCTTATCGCCACGGCCCAGCACTTACA
CAAACCCCCTGAGACGGTGGCCAAGCTCTtgagCCAATTGCAAAAGGTGG
CACCCGACCACCCTTACGTCCAAAATCTTGGCACTTTAGAAGGCGCTTTT
GACCGTCTCCAGGCTCAGTTCGCCTCCCATATCGTGAACGCATAG
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Synonyms
Publications