EWM26919.1, cds3748 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|585109051|gb|EWM26919.1| (coatomer subunit epsilon [Nannochloropsis gaditana]) HSP 1 Score: 290.041 bits (741), Expect = 2.856e-99 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 142
MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA
Sbjct: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 142
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|553191647|ref|XP_005855422.1| (coatomer subunit epsilon [Nannochloropsis gaditana CCMP526] >gi|422293629|gb|EKU20929.1| coatomer subunit epsilon [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 266.544 bits (680), Expect = 3.741e-88 Identity = 133/142 (93.66%), Postives = 133/142 (93.66%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 142
MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGL YEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA
Sbjct: 138 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGL---------YEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 270
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|298711073|emb|CBJ26468.1| (Vesicle coat complex COPI, epsilon subunit [Ectocarpus siliculosus]) HSP 1 Score: 129.413 bits (324), Expect = 4.403e-34 Identity = 64/136 (47.06%), Postives = 90/136 (66.18%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFA 136
+Q +D+DATLTQ+ AWV LAQGG Y++A +F EL+ KY S LLLN V+ +H G Y+EA+ L + + + +++ADTL+NLI +HL KP V + ++QL+ P HPYVQ+L E AFDR+ A FA
Sbjct: 160 LQQADDDATLTQLVVAWVHLAQGGKRYQEAAYIFDELIDKYQASPLLLNSSAVAKMHMGEYQEAETILVEAISK--SQNDADTLVNLICVCRHLDKPASFVDRYINQLKTAHPQHPYVQSLANAESAFDRVAATFA 293
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|1191041931|ref|XP_020898401.1| (coatomer subunit epsilon-like [Exaiptasia pallida]) HSP 1 Score: 124.79 bits (312), Expect = 3.433e-32 Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFAS 137
MQ D+DATLTQ+ AW ++A GG +DA +FQE+ KY + +LLNG + +HQG YE+A+ +L + L + D NA+TLINLI +QHL K PE +L+SQL+ PDHP+ + E F RL Q+A+
Sbjct: 162 MQEIDDDATLTQLALAWFNMAVGGEKLQDAYYIFQEMADKYTPTVMLLNGQAAAYMHQGKYEDAESFLQEAL--EKDSKNAETLINLIVVSQHLGKTPEVSXRLISQLKDGHPDHPFTCDYTNKEQEFGRLAEQYAA 296
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|942201038|ref|XP_006009992.2| (PREDICTED: coatomer subunit epsilon [Latimeria chalumnae]) HSP 1 Score: 124.79 bits (312), Expect = 3.902e-32 Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFA 136
MQ DEDATLTQ+ AWV+LA GG +DA +FQE+ KY ++ LLLNG L QG +E+A+ L + L D D ++ +TLIN I QHL K PE + LSQL+ +HPY++ T E FDRL Q+A
Sbjct: 165 MQEQDEDATLTQLATAWVNLAMGGEKLQDAYYIFQEMADKYSSTLLLLNGQAACYLAQGKWEDAEGVLQEAL--DKDSNHPETLINFIVVTQHLGKAPEVTNRYLSQLKDAHKNHPYIKEYQTKENEFDRLAMQYA 298
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|591355596|ref|XP_007072103.1| (PREDICTED: LOW QUALITY PROTEIN: coatomer subunit epsilon [Chelonia mydas]) HSP 1 Score: 122.865 bits (307), Expect = 7.009e-32 Identity = 62/136 (45.59%), Postives = 84/136 (61.76%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFA 136
MQ DEDATLTQ+ AWV+LA GG +DA +FQE+ K ++ LLLNG + QG +E+AD L + L D D S+ +TL+N + +QHL KPPE ++ LSQL+ HP++Q E FDRL Q+A
Sbjct: 120 MQEQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWEDADSVLQEAL--DKDSSHPETLVNFVVLSQHLGKPPEVTSRYLSQLKDAHKSHPFIQEYQAKENDFDRLVMQYA 253
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|470325562|ref|XP_004364490.1| (hypothetical protein CAOG_01622 [Capsaspora owczarzaki ATCC 30864] >gi|765549668|gb|KJE90289.1| hypothetical protein CAOG_001622 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 124.02 bits (310), Expect = 8.816e-32 Identity = 62/139 (44.60%), Postives = 88/139 (63.31%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHI 139
MQ D+D+TLTQ+T AWV+LA GG Y++A +FQE+ KY + LLNG V LHQG EEA+ L + L + D S+ DT+ NL+ + H +KP E + + ++QL+ AP HP+ ++L E AFDR QFA +
Sbjct: 175 MQEIDDDSTLTQLTNAWVNLAVGGDKYQEAYFIFQEMAEKYSPTVALLNGQAVCHLHQGRLEEAESLLQEALSK--DSSDPDTIANLVTVSIHQNKPQEVINRFVNQLKDEAPAHPFTRDLLAKERAFDRAAEQFAPQV 311
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|1005443884|ref|XP_015759278.1| (PREDICTED: coatomer subunit epsilon-like [Acropora digitifera]) HSP 1 Score: 122.865 bits (307), Expect = 9.147e-32 Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHI 139
MQ D+DATLTQ+ AW +L+ GG Y+DA +FQEL KY + +LLNG V+ +H G +E+A+ L L D D SN +TLIN+I +QHL K PE + +SQL+ P+HP + E AFD+L Q+A +
Sbjct: 128 MQDQDDDATLTQLALAWFNLSVGGEKYQDAYYIFQELSDKYTPTVMLLNGQAVAYMHMGKFEDAESLLQDAL--DKDSSNPETLINMIVLSQHLGKAPEVTTRYISQLKDGHPNHPLTKEFQAKEKAFDQLAGQYAVSV 264
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|1190428517|ref|XP_020864510.1| (coatomer subunit epsilon [Phascolarctos cinereus]) HSP 1 Score: 123.635 bits (309), Expect = 1.059e-31 Identity = 63/136 (46.32%), Postives = 84/136 (61.76%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFA 136
MQ DEDATLTQ+ AWV LA GG +DA +FQE+ KY ++ LLLNG + QG +E+A+ L + L D D S+ +TLIN I +QHL KPPE + LSQL+ HP+++ + E FDRL Q+A
Sbjct: 174 MQEQDEDATLTQLATAWVSLAMGGEKLQDAYYIFQEMADKYSSTLLLLNGQAACYMAQGKWEDAEGVLQEAL--DKDSSHPETLINFIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQSKENDFDRLALQYA 307
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|1005953848|ref|XP_015785313.1| (PREDICTED: coatomer subunit epsilon-like [Tetranychus urticae]) HSP 1 Score: 122.865 bits (307), Expect = 1.955e-31 Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 0
Query: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQF 135
MQ DE+ATLTQ+ AW+++ GG +++A ++QEL KYG + LLLNG+ V+ + QG YEE + L Q L + D +N +TLINLI + L KPPE + LSQL+ HPYV +L + E F+RL Q+
Sbjct: 165 MQEKDEEATLTQLAQAWINIHVGGEKFQEAYYIYQELADKYGPTPLLLNGIAVAQIGQGKYEEVESILQQAL--EKDNNNPETLINLIHVSHQLGKPPEVCNRFLSQLKDSNSIHPYVNDLQSKENEFERLTRQY 297 The following BLAST results are available for this feature:
BLAST of EWM26919.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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