EWM26919.1, cds3748 (CDS) Nannochloropsis gaditana

Overview
NameEWM26919.1
Unique Namecds3748
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1150562..1150627 +
Alignment locationCM002461.1:1150794..1150875 +
Alignment locationCM002461.1:1151084..1151157 +
Alignment locationCM002461.1:1151387..1151481 +
Alignment locationCM002461.1:1151606..1151717 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26919.1
Productcoatomer subunit epsilon
Orig transcript idgnl|cribi|Naga_100284g6.702.mrna
GeneCPC22
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1150562..1150627 +
CM002461.1supercontigCM002461.1:1150794..1150875 +
CM002461.1supercontigCM002461.1:1151084..1151157 +
CM002461.1supercontigCM002461.1:1151387..1151481 +
CM002461.1supercontigCM002461.1:1151606..1151717 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006890retrograde vesicle-mediated transport, Golgi to ER
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR006822Coatomer_esu
Homology
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|585109051|gb|EWM26919.1| (coatomer subunit epsilon [Nannochloropsis gaditana])

HSP 1 Score: 290.041 bits (741), Expect = 2.856e-99
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 142
            MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA
Sbjct:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 142          
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|553191647|ref|XP_005855422.1| (coatomer subunit epsilon [Nannochloropsis gaditana CCMP526] >gi|422293629|gb|EKU20929.1| coatomer subunit epsilon [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 266.544 bits (680), Expect = 3.741e-88
Identity = 133/142 (93.66%), Postives = 133/142 (93.66%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 142
            MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGL         YEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA
Sbjct:  138 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGL---------YEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 270          
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|298711073|emb|CBJ26468.1| (Vesicle coat complex COPI, epsilon subunit [Ectocarpus siliculosus])

HSP 1 Score: 129.413 bits (324), Expect = 4.403e-34
Identity = 64/136 (47.06%), Postives = 90/136 (66.18%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFA 136
            +Q +D+DATLTQ+  AWV LAQGG  Y++A  +F EL+ KY  S LLLN   V+ +H G Y+EA+  L + + +   +++ADTL+NLI   +HL KP   V + ++QL+   P HPYVQ+L   E AFDR+ A FA
Sbjct:  160 LQQADDDATLTQLVVAWVHLAQGGKRYQEAAYIFDELIDKYQASPLLLNSSAVAKMHMGEYQEAETILVEAISK--SQNDADTLVNLICVCRHLDKPASFVDRYINQLKTAHPQHPYVQSLANAESAFDRVAATFA 293          
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|1191041931|ref|XP_020898401.1| (coatomer subunit epsilon-like [Exaiptasia pallida])

HSP 1 Score: 124.79 bits (312), Expect = 3.433e-32
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFAS 137
            MQ  D+DATLTQ+  AW ++A GG   +DA  +FQE+  KY  + +LLNG   + +HQG YE+A+ +L + L  + D  NA+TLINLI  +QHL K PE   +L+SQL+   PDHP+  +    E  F RL  Q+A+
Sbjct:  162 MQEIDDDATLTQLALAWFNMAVGGEKLQDAYYIFQEMADKYTPTVMLLNGQAAAYMHQGKYEDAESFLQEAL--EKDSKNAETLINLIVVSQHLGKTPEVSXRLISQLKDGHPDHPFTCDYTNKEQEFGRLAEQYAA 296          
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|942201038|ref|XP_006009992.2| (PREDICTED: coatomer subunit epsilon [Latimeria chalumnae])

HSP 1 Score: 124.79 bits (312), Expect = 3.902e-32
Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFA 136
            MQ  DEDATLTQ+  AWV+LA GG   +DA  +FQE+  KY ++ LLLNG     L QG +E+A+  L + L  D D ++ +TLIN I   QHL K PE   + LSQL+    +HPY++   T E  FDRL  Q+A
Sbjct:  165 MQEQDEDATLTQLATAWVNLAMGGEKLQDAYYIFQEMADKYSSTLLLLNGQAACYLAQGKWEDAEGVLQEAL--DKDSNHPETLINFIVVTQHLGKAPEVTNRYLSQLKDAHKNHPYIKEYQTKENEFDRLAMQYA 298          
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|591355596|ref|XP_007072103.1| (PREDICTED: LOW QUALITY PROTEIN: coatomer subunit epsilon [Chelonia mydas])

HSP 1 Score: 122.865 bits (307), Expect = 7.009e-32
Identity = 62/136 (45.59%), Postives = 84/136 (61.76%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFA 136
            MQ  DEDATLTQ+  AWV+LA GG   +DA  +FQE+  K  ++ LLLNG     + QG +E+AD  L + L  D D S+ +TL+N +  +QHL KPPE  ++ LSQL+     HP++Q     E  FDRL  Q+A
Sbjct:  120 MQEQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWEDADSVLQEAL--DKDSSHPETLVNFVVLSQHLGKPPEVTSRYLSQLKDAHKSHPFIQEYQAKENDFDRLVMQYA 253          
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|470325562|ref|XP_004364490.1| (hypothetical protein CAOG_01622 [Capsaspora owczarzaki ATCC 30864] >gi|765549668|gb|KJE90289.1| hypothetical protein CAOG_001622 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 124.02 bits (310), Expect = 8.816e-32
Identity = 62/139 (44.60%), Postives = 88/139 (63.31%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHI 139
            MQ  D+D+TLTQ+T AWV+LA GG  Y++A  +FQE+  KY  +  LLNG  V  LHQG  EEA+  L + L +  D S+ DT+ NL+  + H +KP E + + ++QL+  AP HP+ ++L   E AFDR   QFA  +
Sbjct:  175 MQEIDDDSTLTQLTNAWVNLAVGGDKYQEAYFIFQEMAEKYSPTVALLNGQAVCHLHQGRLEEAESLLQEALSK--DSSDPDTIANLVTVSIHQNKPQEVINRFVNQLKDEAPAHPFTRDLLAKERAFDRAAEQFAPQV 311          
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|1005443884|ref|XP_015759278.1| (PREDICTED: coatomer subunit epsilon-like [Acropora digitifera])

HSP 1 Score: 122.865 bits (307), Expect = 9.147e-32
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHI 139
            MQ  D+DATLTQ+  AW +L+ GG  Y+DA  +FQEL  KY  + +LLNG  V+ +H G +E+A+  L   L  D D SN +TLIN+I  +QHL K PE   + +SQL+   P+HP  +     E AFD+L  Q+A  +
Sbjct:  128 MQDQDDDATLTQLALAWFNLSVGGEKYQDAYYIFQELSDKYTPTVMLLNGQAVAYMHMGKFEDAESLLQDAL--DKDSSNPETLINMIVLSQHLGKAPEVTTRYISQLKDGHPNHPLTKEFQAKEKAFDQLAGQYAVSV 264          
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|1190428517|ref|XP_020864510.1| (coatomer subunit epsilon [Phascolarctos cinereus])

HSP 1 Score: 123.635 bits (309), Expect = 1.059e-31
Identity = 63/136 (46.32%), Postives = 84/136 (61.76%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFA 136
            MQ  DEDATLTQ+  AWV LA GG   +DA  +FQE+  KY ++ LLLNG     + QG +E+A+  L + L  D D S+ +TLIN I  +QHL KPPE   + LSQL+     HP+++   + E  FDRL  Q+A
Sbjct:  174 MQEQDEDATLTQLATAWVSLAMGGEKLQDAYYIFQEMADKYSSTLLLLNGQAACYMAQGKWEDAEGVLQEAL--DKDSSHPETLINFIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQSKENDFDRLALQYA 307          
BLAST of EWM26919.1 vs. NCBI_GenBank
Match: gi|1005953848|ref|XP_015785313.1| (PREDICTED: coatomer subunit epsilon-like [Tetranychus urticae])

HSP 1 Score: 122.865 bits (307), Expect = 1.955e-31
Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 0
Query:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQF 135
            MQ  DE+ATLTQ+  AW+++  GG  +++A  ++QEL  KYG + LLLNG+ V+ + QG YEE +  L Q L  + D +N +TLINLI  +  L KPPE   + LSQL+     HPYV +L + E  F+RL  Q+
Sbjct:  165 MQEKDEEATLTQLAQAWINIHVGGEKFQEAYYIYQELADKYGPTPLLLNGIAVAQIGQGKYEEVESILQQAL--EKDNNNPETLINLIHVSHQLGKPPEVCNRFLSQLKDSNSIHPYVNDLQSKENEFERLTRQY 297          
The following BLAST results are available for this feature:
BLAST of EWM26919.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109051|gb|EWM26919.1|2.856e-99100.00coatomer subunit epsilon [Nannochloropsis gaditana... [more]
gi|553191647|ref|XP_005855422.1|3.741e-8893.66coatomer subunit epsilon [Nannochloropsis gaditana... [more]
gi|298711073|emb|CBJ26468.1|4.403e-3447.06Vesicle coat complex COPI, epsilon subunit [Ectoca... [more]
gi|1191041931|ref|XP_020898401.1|3.433e-3245.26coatomer subunit epsilon-like [Exaiptasia pallida][more]
gi|942201038|ref|XP_006009992.2|3.902e-3247.06PREDICTED: coatomer subunit epsilon [Latimeria cha... [more]
gi|591355596|ref|XP_007072103.1|7.009e-3245.59PREDICTED: LOW QUALITY PROTEIN: coatomer subunit e... [more]
gi|470325562|ref|XP_004364490.1|8.816e-3244.60hypothetical protein CAOG_01622 [Capsaspora owczar... [more]
gi|1005443884|ref|XP_015759278.1|9.147e-3244.60PREDICTED: coatomer subunit epsilon-like [Acropora... [more]
gi|1190428517|ref|XP_020864510.1|1.059e-3146.32coatomer subunit epsilon [Phascolarctos cinereus][more]
gi|1005953848|ref|XP_015785313.1|1.955e-3145.19PREDICTED: coatomer subunit epsilon-like [Tetranyc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3757rna3757Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications