rna3754, rna3754 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3754
Unique Name	rna3754
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1083
Alignment location	CM002461.1:1142805..1144225 -

Link to JBrowse

Properties


Property Name	Value
Product	transcriptional adapter 2
Orig transcript id	gnl\|cribi\|Naga_100888g2.4011.mrna
Orig protein id	gnl\|cribi\|Naga_100888g2.4011
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1142805..1144225 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100888g2	gene3617	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3754	rna3754-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26928.1	cds3745	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:1142805..1144225-
coding sequence from alignment at CM002461.1:1142805..1144225-

mRNA sequence

>rna3754 ID=rna3754|Name=rna3754|organism=Nannochloropsis gaditana|type=mRNA|length=1083bp
ATGACCGGGCACACCTATCCCGTACATGCCCTTGCGACCGAGACTGCGGC
AGGCGGAAACGCTCACGTCCTGTTGTCGGCCTCCGCGGACGGTCGTGTAT
GTCGGTGGGATTTAAGCCGTTTATCTGAGCCTCTGGACGTAGCTTCTGTC
TCAGACGTCCCGGGCGACGGACCTGTCGTTGGAAAGAGGGAGGAAAGCCA
GCCGCAGCAACCGCAGGATGTCAGCATCATGGCCGTGGTGCTCCAGAAGG
ATGAGAACGGCCGGGACGAGATGCTTTTAGGGGGCAAGAATGGACATATC
TATTGCCAACCAGCACCGGGGGCTGCTCCTTCTCCCTCCCTTCCATCCCT
CCCCTCCTTTCCCGCACATCGACACGTCGCCGCCAGACAGTGGCAGGCGC
ACGGCAGCCTCATCACCGCGCTCTCTCTTCATCCGTCCACCCGGACTTCC
TCCTTATCTTCCTCCAAGTTTCGACGTTCCTCTCTCAGCTCCCTTCTCCT
CTCTTCTTCTCTTGATTGCACCATCAAGCTTTGGCATACCCACCGACCGC
CCAAACCCTTGGTGTCCTCTTTCACGCACGGCGCGAACGCCTACGACTAC
GTGAACGATGTGGCTTGGTGCCCTTCCCATCCCTGCATCTTCGCCTCGGT
GAGCTCTGGAGGACTGCTGGGGCTGTGGAATTTAAACCATAGCTTGGAGG
CTCCCTTTCTTCCTCTTTTCCCGGTCACGGGCAGCGTTGCCGATAAACCT
GCATCTCCAACGCCCACGCGAGGTCCATCGGCCCCGGCCGGCTCGGCTCA
AATAGGGAACAGGTCGCTCTTCCCCCCCACTACCCCTCCTTCGTCCCCTC
CCGTCGCCTTGACCCGCCTCGCTTGGGCAGGGAATGGAAAAAGGCTGGCA
GTTGGCGATACCAGCGGCAGGATTCATGTGCTGGGGATGGCGGAAGAGGT
GAGGGAAAGGGAAAGGAAGGCAGGGAAGGGGCCAGGTCATGAAGGTTGGA
ATGATTGGAGGGCTTTCGGTCGTCGCAGCGACATGAAGGAGAAGAATTTG
AAGGATAAGAATTGCTCGTTTCCAGGTGCCTGA

protein sequence of rna3754

>rna3754-protein ID=rna3754-protein|Name=rna3754|organism=Nannochloropsis gaditana|type=polypeptide|length=255bp
MSTKEVAGCKLSCLLPLPRAWPSGYCLLIDLRLPILSPGVELLSGKEKEL
CAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAV
PPSSLVTMDVEKKKGVYDFMVRVGWVSPLVANARSDVKDITVKVNRSGSA
PNTTGSSSLSSSGQGKNSTGDGCRRQFWMRRMRASAPLDRKQTDLSTSPC
RLSRRGTQDSSHYVMSGRGRKKLACVRKMIRRESEESEGSNESKQGLKRA
EHLQD

mRNA from alignment at CM002461.1:1142805..1144225-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3754 ID=rna3754|Name=rna3754|organism=Nannochloropsis gaditana|type=mRNA|length=1421bp|location=Sequence derived from alignment at CM002461.1:1142805..1144225- (Nannochloropsis gaditana)
ATGTCGACGAAAGAGGTTGCCGGCTGCAAGCTATCATGCCTGCTGCCACT
TCCTCGCGCATGGCCCTCTGGCTATTGCCTTCTCATCGACCTACGTCTCC
CTATTCTATCCCCAGGCGTCGAGCTCCTTTCAGGGAAGGAGAAGGAGCTC
TGCGCGGGTTTGCGCCTCCTGCCGAAGCATTATTTGTACATCAAGGTGGG
CGGGGTGGGGGTTAAAGGGAGGGGTCGGCCCCACGAAGGTAGCGTTTGTC
CGCTACCGCGGTCACATTCCCTCTTTTGACGGAGCCTACATGTCCTTTTT
CAGCTTTCCTTTCGGCTGATATCAGAAACCTTCTTAGTCCCTCTGGCTTT
GCCTCTTGATCTGCCTCGACGTAATTTTGAGTCTTTTTAGCGCGTCACCT
TTCCTTTTCGCGGACTCTTTTCTGCCTTTTTATTCTTGCCTTCCCCTTAC
ATGACCCGTACAACCCCTTGTTACGGCACAGAATCGCATTCTGCAAGAAA
GTGAAGCCTGCGGTCTCCTCCCTGCCCCGAACTGTGCAGAACCCAAGAGT
GCGGGCGGGGGGGAGACGGAGGGTGATACGGCAGTACCTCCTTCGTCGCT
GGTCACCATGGACGTGGAGAAGAAGAAGGGGGTCTATGACTTCATGGTTC
GGGTTGGCTGGGTCTCGCCACTAGGTAGGAAGGAAAGGACAAGGGGAGGG
AGCCATTGTCCATGGTCATGGTCTTTGTGGTGCGTGAGTGAAGGTCATTC
TTGTACTCTGTGTCGGTCATTTTGGCGCTTGGAAACATAACCTTTCTTTT
GAGTCATGAGCCTTGCGTTCTCGGCAATAGTAGCACCCTCACGTACTGCC
GTATCTTCATCTTTGTCTCCATTTCTCTCCTTCACCACTGCACGATTCAG
TCGCCAACGCCCGCTCCGACGTCAAAGATATCACTGTCAAAGTCAACCGC
AGCGGGAGTGCTCCGAACACAACCGGTTCCTCTTCTTTGTCCTCGTCCTT
GCCCTCTTCCATGAAGAGTTCCGCGTCCCCACAGAAGAAGAATGGTGAAA
TGGGAGAAGGAGTGGGCAAGGAAAGAATAGCACAGGAGATGGATGTAGAA
GGCAATTCTGGATGAGGAGAATGAGGGCTAGCGCGCCACTTGATCGAAAG
CAAACCGACTTGAGTACCTCCCCTTGTCGCCTTTCCCGTCGTCACTCCCT
CTCGCTTCCTTCCATTGGGCTCTCTCTCCTCTCCTCCACCCTCGCGATGC
CATTTTTGCGATTTAGGGGGGACGCAAGATTCTTCGCATTATGTCATGTC
AGGGAGGGGGAGAAAGAAGCTTGCTTGTGTTCGTAAAATGATTCGAAGAG
AATCGGAGGAGAGCGAGGGGAGCAATGAATCCAAGCAGGGATTAAAGAGA
GCAGAACACTTGCAGGATTAA

Coding sequence (CDS) from alignment at CM002461.1:1142805..1144225-

>rna3754 ID=rna3754|Name=rna3754|organism=Nannochloropsis gaditana|type=CDS|length=3840bp|location=Sequence derived from alignment at CM002461.1:1142805..1144225- (Nannochloropsis gaditana)
GGGGGACGCAAGATTCTTCGCATTATGTCATGTCAGGGAGGGGGAGAAAG
AAGCTTGCTTGTGTTCGTAAAATGATTCGAAGAGAATCGGAGGAGAGCGA
GGGGAGCAATGAATCCAAGCAGGGATTAAAGAGAGCAGAACACTTGCAGG
ATTAAGAGTGGGCAAGGAAAGAATAGCACAGGAGATGGATGTAGAAGGCA
ATTCTGGATGAGGAGAATGAGGGCTAGCGCGCCACTTGATCGAAAGCAAA
CCGACTTGAGTACCTCCCCTTGTCGCCTTTCCCGTCTCGCCAACGCCCGC
TCCGACGTCAAAGATATCACTGTCAAAGTCAACCGCAGCGGGAGTGCTCC
GAACACAACCGGTTCCTCTTCTTTGTCCTCAATCGCATTCTGCAAGAAAG
TGAAGCCTGCGGTCTCCTCCCTGCCCCGAACTGTGCAGAACCCAAGAGTG
CGGGCGGGGGGGAGACGGAGGGTGATACGGCAGTACCTCCTTCGTCGCTG
GTCACCATGGACGTGGAGAAGAAGAAGGGGGTCTATGACTTCATGGTTCG
GGTTGGCTGGGTCTCGCCACTAGATGTCGACGAAAGAGGTTGCCGGCTGC
AAGCTATCATGCCTGCTGCCACTTCCTCGCGCATGGCCCTCTGGCTATTG
CCTTCTCATCGACCTACGTCTCCCTATTCTATCCCCAGGCGTCGAGCTCC
TTTCAGGGAAGGAGAAGGAGCTCTGCGCGGGTTTGCGCCTCCTGCCGAAG
CATTATTTGTACATCAAGGGGGGACGCAAGATTCTTCGCATTATGTCATG
TCAGGGAGGGGGAGAAAGAAGCTTGCTTGTGTTCGTAAAATGATTCGAAG
AGAATCGGAGGAGAGCGAGGGGAGCAATGAATCCAAGCAGGGATTAAAGA
GAGCAGAACACTTGCAGGATTAAGAGTGGGCAAGGAAAGAATAGCACAGG
AGATGGATGTAGAAGGCAATTCTGGATGAGGAGAATGAGGGCTAGCGCGC
CACTTGATCGAAAGCAAACCGACTTGAGTACCTCCCCTTGTCGCCTTTCC
CGTCTCGCCAACGCCCGCTCCGACGTCAAAGATATCACTGTCAAAGTCAA
CCGCAGCGGGAGTGCTCCGAACACAACCGGTTCCTCTTCTTTGTCCTCAA
TCGCATTCTGCAAGAAAGTGAAGCCTGCGGTCTCCTCCCTGCCCCGAACT
GTGCAGAACCCAAGAGTGCGGGCGGGGGGGAGACGGAGGGTGATACGGCA
GTACCTCCTTCGTCGCTGGTCACCATGGACGTGGAGAAGAAGAAGGGGGT
CTATGACTTCATGGTTCGGGTTGGCTGGGTCTCGCCACTAGATGTCGACG
AAAGAGGTTGCCGGCTGCAAGCTATCATGCCTGCTGCCACTTCCTCGCGC
ATGGCCCTCTGGCTATTGCCTTCTCATCGACCTACGTCTCCCTATTCTAT
CCCCAGGCGTCGAGCTCCTTTCAGGGAAGGAGAAGGAGCTCTGCGCGGGT
TTGCGCCTCCTGCCGAAGCATTATTTGTACATCAAGGGGGGACGCAAGAT
TCTTCGCATTATGTCATGTCAGGGAGGGGGAGAAAGAAGCTTGCTTGTGT
TCGTAAAATGATTCGAAGAGAATCGGAGGAGAGCGAGGGGAGCAATGAAT
CCAAGCAGGGATTAAAGAGAGCAGAACACTTGCAGGATTAAGAGTGGGCA
AGGAAAGAATAGCACAGGAGATGGATGTAGAAGGCAATTCTGGATGAGGA
GAATGAGGGCTAGCGCGCCACTTGATCGAAAGCAAACCGACTTGAGTACC
TCCCCTTGTCGCCTTTCCCGTCTCGCCAACGCCCGCTCCGACGTCAAAGA
TATCACTGTCAAAGTCAACCGCAGCGGGAGTGCTCCGAACACAACCGGTT
CCTCTTCTTTGTCCTCAATCGCATTCTGCAAGAAAGTGAAGCCTGCGGTC
TCCTCCCTGCCCCGAACTGTGCAGAACCCAAGAGTGCGGGCGGGGGGGAG
ACGGAGGGTGATACGGCAGTACCTCCTTCGTCGCTGGTCACCATGGACGT
GGAGAAGAAGAAGGGGGTCTATGACTTCATGGTTCGGGTTGGCTGGGTCT
CGCCACTAGATGTCGACGAAAGAGGTTGCCGGCTGCAAGCTATCATGCCT
GCTGCCACTTCCTCGCGCATGGCCCTCTGGCTATTGCCTTCTCATCGACC
TACGTCTCCCTATTCTATCCCCAGGCGTCGAGCTCCTTTCAGGGAAGGAG
AAGGAGCTCTGCGCGGGTTTGCGCCTCCTGCCGAAGCATTATTTGTACAT
CAAGGGGGGACGCAAGATTCTTCGCATTATGTCATGTCAGGGAGGGGGAG
AAAGAAGCTTGCTTGTGTTCGTAAAATGATTCGAAGAGAATCGGAGGAGA
GCGAGGGGAGCAATGAATCCAAGCAGGGATTAAAGAGAGCAGAACACTTG
CAGGATTAAGAGTGGGCAAGGAAAGAATAGCACAGGAGATGGATGTAGAA
GGCAATTCTGGATGAGGAGAATGAGGGCTAGCGCGCCACTTGATCGAAAG
CAAACCGACTTGAGTACCTCCCCTTGTCGCCTTTCCCGTCTCGCCAACGC
CCGCTCCGACGTCAAAGATATCACTGTCAAAGTCAACCGCAGCGGGAGTG
CTCCGAACACAACCGGTTCCTCTTCTTTGTCCTCAATCGCATTCTGCAAG
AAAGTGAAGCCTGCGGTCTCCTCCCTGCCCCGAACTGTGCAGAACCCAAG
AGTGCGGGCGGGGGGGAGACGGAGGGTGATACGGCAGTACCTCCTTCGTC
GCTGGTCACCATGGACGTGGAGAAGAAGAAGGGGGTCTATGACTTCATGG
TTCGGGTTGGCTGGGTCTCGCCACTAGATGTCGACGAAAGAGGTTGCCGG
CTGCAAGCTATCATGCCTGCTGCCACTTCCTCGCGCATGGCCCTCTGGCT
ATTGCCTTCTCATCGACCTACGTCTCCCTATTCTATCCCCAGGCGTCGAG
CTCCTTTCAGGGAAGGAGAAGGAGCTCTGCGCGGGTTTGCGCCTCCTGCC
GAAGCATTATTTGTACATCAAGGGGGGACGCAAGATTCTTCGCATTATGT
CATGTCAGGGAGGGGGAGAAAGAAGCTTGCTTGTGTTCGTAAAATGATTC
GAAGAGAATCGGAGGAGAGCGAGGGGAGCAATGAATCCAAGCAGGGATTA
AAGAGAGCAGAACACTTGCAGGATTAAGAGTGGGCAAGGAAAGAATAGCA
CAGGAGATGGATGTAGAAGGCAATTCTGGATGAGGAGAATGAGGGCTAGC
GCGCCACTTGATCGAAAGCAAACCGACTTGAGTACCTCCCCTTGTCGCCT
TTCCCGTCTCGCCAACGCCCGCTCCGACGTCAAAGATATCACTGTCAAAG
TCAACCGCAGCGGGAGTGCTCCGAACACAACCGGTTCCTCTTCTTTGTCC
TCAATCGCATTCTGCAAGAAAGTGAAGCCTGCGGTCTCCTCCCTGCCCCG
AACTGTGCAGAACCCAAGAGTGCGGGCGGGGGGGAGACGGAGGGTGATAC
GGCAGTACCTCCTTCGTCGCTGGTCACCATGGACGTGGAGAAGAAGAAGG
GGGTCTATGACTTCATGGTTCGGGTTGGCTGGGTCTCGCCACTAGATGTC
GACGAAAGAGGTTGCCGGCTGCAAGCTATCATGCCTGCTGCCACTTCCTC
GCGCATGGCCCTCTGGCTATTGCCTTCTCATCGACCTACGTCTCCCTATT
CTATCCCCAGGCGTCGAGCTCCTTTCAGGGAAGGAGAAGGAGCTCTGCGC
GGGTTTGCGCCTCCTGCCGAAGCATTATTTGTACATCAAG

Synonyms

Publications