EWM26928.1, cds3745 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|585109062|gb|EWM26928.1| (transcriptional adapter 2 [Nannochloropsis gaditana]) HSP 1 Score: 518.464 bits (1334), Expect = 0.000e+0 Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query: 1 MSTKEVAGCKLSCLLPLPRAWPSGYCLLIDLRLPILSPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVSPLVANARSDVKDITVKVNRSGSAPNTTGSSSLSSSGQGKNSTGDGCRRQFWMRRMRASAPLDRKQTDLSTSPCRLSRRGTQDSSHYVMSGRGRKKLACVRKMIRRESEESEGSNESKQGLKRAEHLQD 255
MSTKEVAGCKLSCLLPLPRAWPSGYCLLIDLRLPILSPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVSPLVANARSDVKDITVKVNRSGSAPNTTGSSSLSSSGQGKNSTGDGCRRQFWMRRMRASAPLDRKQTDLSTSPCRLSRRGTQDSSHYVMSGRGRKKLACVRKMIRRESEESEGSNESKQGLKRAEHLQD
Sbjct: 1 MSTKEVAGCKLSCLLPLPRAWPSGYCLLIDLRLPILSPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVSPLVANARSDVKDITVKVNRSGSAPNTTGSSSLSSSGQGKNSTGDGCRRQFWMRRMRASAPLDRKQTDLSTSPCRLSRRGTQDSSHYVMSGRGRKKLACVRKMIRRESEESEGSNESKQGLKRAEHLQD 255
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|635370457|emb|CCI41344.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 68.9366 bits (167), Expect = 9.481e-10 Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 0
Query: 37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
+PG LL+ EKELC+ L+LLPKHYL IK+ +++E G L P+ A+ +V +DVEK + +YDF V GWV
Sbjct: 478 APGAHLLAPTEKELCSKLQLLPKHYLVIKDVLIRECYRMGYL-TPDAAQ------------------QIVKLDVEKSEDIYDFFVSCGWV 548
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|223994201|ref|XP_002286784.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220978099|gb|EED96425.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-9 Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 0
Query: 38 PGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVS 127
PG LLS KEKELC LRLLP+HYL +K +L ES A G+ +P VT+DVE++ + DF+++ GW+S
Sbjct: 338 PGFALLSPKEKELCKRLRLLPQHYLDVKKALLSESLAAGIWDQRGQKKP------------------FVTIDVEQRDDIIDFVLKAGWIS 409
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|325189481|emb|CCA23969.1| (transcriptional adapter 2alpha putative [Albugo laibachii Nc14]) HSP 1 Score: 67.0106 bits (162), Expect = 4.268e-9 Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 0
Query: 37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
+PG LL+ EKELC+ L++LPKHYL IK+ +++E G L P+ A +V +DVEK + +YDF V GWV
Sbjct: 475 APGAHLLAPTEKELCSKLQILPKHYLVIKDVLIRECYRLGYL-TPDTAR------------------QIVKLDVEKSEDIYDFFVSCGWV 545
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|1183327901|gb|ORX57655.1| (SWIRM-domain-containing protein [Hesseltinella vesiculosa]) HSP 1 Score: 64.6994 bits (156), Expect = 1.126e-8 Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = 0
Query: 39 GVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVS 127
G+ELLS +E+ LC+ LRLLP+ YL IKN IL+E E G L +L+ +DV K +YDF + GW+S
Sbjct: 208 GIELLSTEEQTLCSTLRLLPRPYLVIKNTILREYEKQGFLKRRAT-------------------RALIKIDVNKTSRIYDFFIERGWIS 277
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|301114429|ref|XP_002998984.1| (transcriptional adapter 2-alpha, putative [Phytophthora infestans T30-4] >gi|262111078|gb|EEY69130.1| transcriptional adapter 2-alpha, putative [Phytophthora infestans T30-4]) HSP 1 Score: 65.4698 bits (158), Expect = 1.456e-8 Identity = 36/90 (40.00%), Postives = 46/90 (51.11%), Query Frame = 0
Query: 37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
+PG LL+ KEKELC+ L+LLPKHYL IK+ +++E G L E V +DV K VYDF V+ GWV
Sbjct: 421 TPGCHLLTPKEKELCSKLKLLPKHYLVIKDALVRECYRLGYLSKKMAKET-------------------VQIDVNKTGQVYDFFVKCGWV 491
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|855305907|ref|XP_012895578.1| (uncharacterized protein [Blastocystis hominis] >gi|300121149|emb|CBK21530.2| unnamed protein product [Blastocystis hominis]) HSP 1 Score: 60.077 bits (144), Expect = 1.541e-8 Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0
Query: 39 GVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVS 127
GVE+LS +EK LC+ L L+P+HY+ IK+ I+QE C + G G EG + +TMDVE+++ +DF V GW++
Sbjct: 3 GVEMLSPEEKRLCSLLHLVPRHYMAIKSTIIQE-----------CCKN---GMGSREG-------AKITMDVERRQKEFDFFVSCGWIT 70
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|1214676649|gb|OWY97730.1| (Transcriptional adapter 2-alpha [Phytophthora megakarya]) HSP 1 Score: 65.0846 bits (157), Expect = 2.035e-8 Identity = 36/90 (40.00%), Postives = 45/90 (50.00%), Query Frame = 0
Query: 37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
+PG LL+ KEKELC L+LLPKHYL IK+ +++E G L E V +DV K VYDF V+ GWV
Sbjct: 465 TPGCHLLTPKEKELCCKLKLLPKHYLVIKDALVRECYRLGYLTKKMAKET-------------------VQIDVNKTGHVYDFFVKCGWV 535
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|953494619|emb|CEG44213.1| (transcriptional adapter 2 [Plasmopara halstedii]) HSP 1 Score: 64.6994 bits (156), Expect = 2.871e-8 Identity = 35/90 (38.89%), Postives = 45/90 (50.00%), Query Frame = 0
Query: 37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
+PG LL+ KEKELC L+LLPKHYL IK+ +++E G L E V +DV K +YDF V+ GWV
Sbjct: 464 TPGCHLLTPKEKELCGKLKLLPKHYLVIKDALVRECYRLGYLTKKMAKE-------------------TVQIDVNKTGQIYDFFVKCGWV 534
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|695464329|ref|XP_009538924.1| (hypothetical protein PHYSODRAFT_551398 [Phytophthora sojae] >gi|348665564|gb|EGZ05393.1| hypothetical protein PHYSODRAFT_551398 [Phytophthora sojae]) HSP 1 Score: 64.3142 bits (155), Expect = 2.987e-8 Identity = 36/90 (40.00%), Postives = 46/90 (51.11%), Query Frame = 0
Query: 37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
+PG LL+ KEKELC+ L+LLPKHYL IK+ +++E G L E V +DV K VYDF V+ GWV
Sbjct: 421 TPGCHLLTPKEKELCSKLKLLPKHYLVIKDALVRECFRLGYLTKKMAKE-------------------TVQIDVNKTGQVYDFFVKCGWV 491 The following BLAST results are available for this feature:
BLAST of EWM26928.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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