EWM26928.1, cds3745 (CDS) Nannochloropsis gaditana

Overview
NameEWM26928.1
Unique Namecds3745
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1144031..1144225 -
Alignment locationCM002461.1:1143552..1143744 -
Alignment locationCM002461.1:1143232..1143325 -
Alignment locationCM002461.1:1143036..1143166 -
Alignment locationCM002461.1:1142805..1142959 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26928.1
Producttranscriptional adapter 2
Orig transcript idgnl|cribi|Naga_100888g2.4011.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1144031..1144225 -
CM002461.1supercontigCM002461.1:1143552..1143744 -
CM002461.1supercontigCM002461.1:1143232..1143325 -
CM002461.1supercontigCM002461.1:1143036..1143166 -
CM002461.1supercontigCM002461.1:1142805..1142959 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR007526SWIRM
Homology
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|585109062|gb|EWM26928.1| (transcriptional adapter 2 [Nannochloropsis gaditana])

HSP 1 Score: 518.464 bits (1334), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:    1 MSTKEVAGCKLSCLLPLPRAWPSGYCLLIDLRLPILSPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVSPLVANARSDVKDITVKVNRSGSAPNTTGSSSLSSSGQGKNSTGDGCRRQFWMRRMRASAPLDRKQTDLSTSPCRLSRRGTQDSSHYVMSGRGRKKLACVRKMIRRESEESEGSNESKQGLKRAEHLQD 255
            MSTKEVAGCKLSCLLPLPRAWPSGYCLLIDLRLPILSPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVSPLVANARSDVKDITVKVNRSGSAPNTTGSSSLSSSGQGKNSTGDGCRRQFWMRRMRASAPLDRKQTDLSTSPCRLSRRGTQDSSHYVMSGRGRKKLACVRKMIRRESEESEGSNESKQGLKRAEHLQD
Sbjct:    1 MSTKEVAGCKLSCLLPLPRAWPSGYCLLIDLRLPILSPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVSPLVANARSDVKDITVKVNRSGSAPNTTGSSSLSSSGQGKNSTGDGCRRQFWMRRMRASAPLDRKQTDLSTSPCRLSRRGTQDSSHYVMSGRGRKKLACVRKMIRRESEESEGSNESKQGLKRAEHLQD 255          
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|635370457|emb|CCI41344.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 68.9366 bits (167), Expect = 9.481e-10
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 0
Query:   37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
            +PG  LL+  EKELC+ L+LLPKHYL IK+ +++E    G L  P+ A+                   +V +DVEK + +YDF V  GWV
Sbjct:  478 APGAHLLAPTEKELCSKLQLLPKHYLVIKDVLIRECYRMGYL-TPDAAQ------------------QIVKLDVEKSEDIYDFFVSCGWV 548          
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|223994201|ref|XP_002286784.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220978099|gb|EED96425.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-9
Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 0
Query:   38 PGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVS 127
            PG  LLS KEKELC  LRLLP+HYL +K  +L ES A G+       +P                   VT+DVE++  + DF+++ GW+S
Sbjct:  338 PGFALLSPKEKELCKRLRLLPQHYLDVKKALLSESLAAGIWDQRGQKKP------------------FVTIDVEQRDDIIDFVLKAGWIS 409          
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|325189481|emb|CCA23969.1| (transcriptional adapter 2alpha putative [Albugo laibachii Nc14])

HSP 1 Score: 67.0106 bits (162), Expect = 4.268e-9
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 0
Query:   37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
            +PG  LL+  EKELC+ L++LPKHYL IK+ +++E    G L  P+ A                    +V +DVEK + +YDF V  GWV
Sbjct:  475 APGAHLLAPTEKELCSKLQILPKHYLVIKDVLIRECYRLGYL-TPDTAR------------------QIVKLDVEKSEDIYDFFVSCGWV 545          
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|1183327901|gb|ORX57655.1| (SWIRM-domain-containing protein [Hesseltinella vesiculosa])

HSP 1 Score: 64.6994 bits (156), Expect = 1.126e-8
Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = 0
Query:   39 GVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVS 127
            G+ELLS +E+ LC+ LRLLP+ YL IKN IL+E E  G L                         +L+ +DV K   +YDF +  GW+S
Sbjct:  208 GIELLSTEEQTLCSTLRLLPRPYLVIKNTILREYEKQGFLKRRAT-------------------RALIKIDVNKTSRIYDFFIERGWIS 277          
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|301114429|ref|XP_002998984.1| (transcriptional adapter 2-alpha, putative [Phytophthora infestans T30-4] >gi|262111078|gb|EEY69130.1| transcriptional adapter 2-alpha, putative [Phytophthora infestans T30-4])

HSP 1 Score: 65.4698 bits (158), Expect = 1.456e-8
Identity = 36/90 (40.00%), Postives = 46/90 (51.11%), Query Frame = 0
Query:   37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
            +PG  LL+ KEKELC+ L+LLPKHYL IK+ +++E    G L      E                    V +DV K   VYDF V+ GWV
Sbjct:  421 TPGCHLLTPKEKELCSKLKLLPKHYLVIKDALVRECYRLGYLSKKMAKET-------------------VQIDVNKTGQVYDFFVKCGWV 491          
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|855305907|ref|XP_012895578.1| (uncharacterized protein [Blastocystis hominis] >gi|300121149|emb|CBK21530.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 60.077 bits (144), Expect = 1.541e-8
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0
Query:   39 GVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWVS 127
            GVE+LS +EK LC+ L L+P+HY+ IK+ I+QE           C +    G G  EG       + +TMDVE+++  +DF V  GW++
Sbjct:    3 GVEMLSPEEKRLCSLLHLVPRHYMAIKSTIIQE-----------CCKN---GMGSREG-------AKITMDVERRQKEFDFFVSCGWIT 70          
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|1214676649|gb|OWY97730.1| (Transcriptional adapter 2-alpha [Phytophthora megakarya])

HSP 1 Score: 65.0846 bits (157), Expect = 2.035e-8
Identity = 36/90 (40.00%), Postives = 45/90 (50.00%), Query Frame = 0
Query:   37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
            +PG  LL+ KEKELC  L+LLPKHYL IK+ +++E    G L      E                    V +DV K   VYDF V+ GWV
Sbjct:  465 TPGCHLLTPKEKELCCKLKLLPKHYLVIKDALVRECYRLGYLTKKMAKET-------------------VQIDVNKTGHVYDFFVKCGWV 535          
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|953494619|emb|CEG44213.1| (transcriptional adapter 2 [Plasmopara halstedii])

HSP 1 Score: 64.6994 bits (156), Expect = 2.871e-8
Identity = 35/90 (38.89%), Postives = 45/90 (50.00%), Query Frame = 0
Query:   37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
            +PG  LL+ KEKELC  L+LLPKHYL IK+ +++E    G L      E                    V +DV K   +YDF V+ GWV
Sbjct:  464 TPGCHLLTPKEKELCGKLKLLPKHYLVIKDALVRECYRLGYLTKKMAKE-------------------TVQIDVNKTGQIYDFFVKCGWV 534          
BLAST of EWM26928.1 vs. NCBI_GenBank
Match: gi|695464329|ref|XP_009538924.1| (hypothetical protein PHYSODRAFT_551398 [Phytophthora sojae] >gi|348665564|gb|EGZ05393.1| hypothetical protein PHYSODRAFT_551398 [Phytophthora sojae])

HSP 1 Score: 64.3142 bits (155), Expect = 2.987e-8
Identity = 36/90 (40.00%), Postives = 46/90 (51.11%), Query Frame = 0
Query:   37 SPGVELLSGKEKELCAGLRLLPKHYLYIKNRILQESEACGLLPAPNCAEPKSAGGGETEGDTAVPPSSLVTMDVEKKKGVYDFMVRVGWV 126
            +PG  LL+ KEKELC+ L+LLPKHYL IK+ +++E    G L      E                    V +DV K   VYDF V+ GWV
Sbjct:  421 TPGCHLLTPKEKELCSKLKLLPKHYLVIKDALVRECFRLGYLTKKMAKE-------------------TVQIDVNKTGQVYDFFVKCGWV 491          
The following BLAST results are available for this feature:
BLAST of EWM26928.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109062|gb|EWM26928.1|0.000e+0100.00transcriptional adapter 2 [Nannochloropsis gaditan... [more]
gi|635370457|emb|CCI41344.1|9.481e-1040.00unnamed protein product [Albugo candida][more]
gi|223994201|ref|XP_002286784.1|1.520e-940.00predicted protein, partial [Thalassiosira pseudona... [more]
gi|325189481|emb|CCA23969.1|4.268e-938.89transcriptional adapter 2alpha putative [Albugo la... [more]
gi|1183327901|gb|ORX57655.1|1.126e-838.20SWIRM-domain-containing protein [Hesseltinella ves... [more]
gi|301114429|ref|XP_002998984.1|1.456e-840.00transcriptional adapter 2-alpha, putative [Phytoph... [more]
gi|855305907|ref|XP_012895578.1|1.541e-838.20uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|1214676649|gb|OWY97730.1|2.035e-840.00Transcriptional adapter 2-alpha [Phytophthora mega... [more]
gi|953494619|emb|CEG44213.1|2.871e-838.89transcriptional adapter 2 [Plasmopara halstedii][more]
gi|695464329|ref|XP_009538924.1|2.987e-840.00hypothetical protein PHYSODRAFT_551398 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3754rna3754Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications