rna375, rna375 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna375
Unique Name	rna375
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2061
Alignment location	CM002455.1:916972..919497 +

Link to JBrowse

Properties


Property Name	Value
Product	nadph dependent mannose 6-phosphate reductase
Orig transcript id	gnl\|cribi\|Naga_100003g115.1762.mrna
Orig protein id	gnl\|cribi\|Naga_100003g115.1762
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:916972..919497 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g115	gene362	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna375	rna375-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30245.1	cds375	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:916972..919497+
coding sequence from alignment at CM002455.1:916972..919497+

mRNA sequence

>rna375 ID=rna375|Name=rna375|organism=Nannochloropsis gaditana|type=mRNA|length=2061bp
AAGCGTGCTTGGCTAAACAGCCATCTTGGCCACCATTTTGCGTCTTTCCA
TCGTATATCGTCACACTCACAGTGTCAACTACATTGGTGACAATAGAGCG
ATATTCCATTCCTTCTAACAGCAGACTTAAGTGACCGGGCGTAGTCACGA
ACGCCATAAATCTGTCCTCACCGCTTCCTTGACAATTCGATAAAAGATGA
GAGGACCCTTCCACCGCAGCTATGCTGCTTTTGTTATTCTCGCGAGTCTT
TTGGCATCTAAGTGAGGTAAAATCTGCGAGGGACAAATATAATTGATTTA
GGCGCACGATGCCGTAAAATGCCCTGATGTGGACTAACGTTGGATCTACA
TCTTTATCGACGTCCAGTATACGCCAACCTGAGAGTTTTAGCACGTCTTC
TTTTTGAGAGTCTTCATTGTGCTCGTTTGTACCAGTGTCGTCATCAAGGG
CGCCAAGTCCTAGCACTGAAAATGGCATAGCTGGAGGTGCGATGATTTGC
GTAGGATCGTTAACGTTTTGAACTATAATCTGTTGCTCTGAAGGAAGTGA
CGCGGCAAGTTGACCCTTCTTTGCTGCAAAACATTCTACCACACAAAAGT
CAAAGCCGTCTTCCAGTCCGCTTTCAGTAAACAGTGCGGTGCCGTTCCAC
GTACGATTTGGCCATGTAAAAAAACCAGCGTCAGACATGTAATGGAGCGT
AACACCCACGTCGTAGGGAGGGCTCGATGTCTGCTCCGGTAGTTGGAACG
GCACGGAGTCCAAGGAGCTGACCGTTCCATTCGCGGCAATCGTGTACAAA
GTGCCATGGCGTGGCAAGCGTGTGATCTCAAAGCATATGTCACGGCGTTG
TACGCTTTGGTAGTCTGCACCGAATAATGTGATCGGAGTCAGAGTATGCT
CCTGTACAATTGGCCAAGGGACGGCTGGCAAGGCTACAAGTGAAGGTGTG
ATCAGAATCCTGACGAGGGCAGGAATCGATTGGGTGTTGAAGTCATCGGT
GACCGTGTAAGTGAAGGAATCATTCCCAAGCATACTGTGTGAGGTGGTAT
CCGCGCTGCGACTAGTGCTGTTGTCCTTGGCAGCTTGGGGTAGTGTTTGT
GGACCTGTAAAGAAGTAAGCGACCTGTGCTGGCATCGCAGGGGCGGTCAA
GATCTCATCTCCGACGATCAGAGGCGAGGTAGCATTGGTATCATTTACTC
GATACAGGTAGCCGTGAGTCGGCAGTGAGGCTACTCGAGCTGAAACGATG
CGAAATCCCCCATATGCGAACCCTTCAAGCGCCACAGCCGTAAGCCTGGC
CGCCATTGCCACCAGCGACACATTAGAAGTGTTGTTGGTATGATTGGAAC
CGTTGCCGGCGATAGGAATTTGATGCACGGCTTTGACGTACACGGAAATT
GTGGCTGTATTGCTGGCGAGGCCTGTGACACCATCCACAGCGAAGACCTC
GAAGGTTGTGTAGGTATGAGGCCAGGACACTTCCTTCCAGCCTGGTCTAA
ATCTCAGCTGAGTGGTAAAGGTGCCATTCAAAGAAGCGCCGTTTCCGCGT
GGAGATTCGACGGCCAAGGCGATCGGCAACGATCCGTGAATGGCGGTGCC
ATTCATGAAATAGAGCGTCCCGTTGGCGGGGAGGGTTGCCAAGCAAAGGC
CCGGAAATGTGATCGGCGAAGCCGAAGCGTTGTAGTTGGGACTGGAAGGG
TCGTGATCTCCATCCAGGACCACGAGAGTAAGGCTAACAAGCTCGTCTAC
AGGAACAGGACTGAGGTAGAACTCAGGTGTATCGTAATGCGAGCCTACTT
CACCATTTTCTTGTACCACGTGAGAGGCATCCTGGACGATAGGCGGGCTG
TTCGGGACCCGAGCTGCATAATTCTGAGCTACTTCTTCGGGAGAAAGGAC
TCGATTGTACAATGCCCATTCGAACAACCTTCCGGACCACTCAACTGTTT
CGGTGCTTAAAAATGATGGCTCAGAAAAAAAAAACAAGCGGTCTGTTGCA
TCCCAATACGTGAGTCTGCCATCGAGCGCACTTCGCTGATTCTCACTAGC
ATTGTGAACCC

protein sequence of rna375

>rna375-protein ID=rna375-protein|Name=rna375|organism=Nannochloropsis gaditana|type=polypeptide|length=527bp
MCLRMRALIHIFGCAPSYPFRYKLPQEVRRVRDSLHVPPDMAKWRVFFLL
LLGVTSTRSFRFLPVRSPSSPALLPSCWAIALSRTTLTPLYSDAFFNFEG
LQKRLNLTHFDDSSQHSPPPLRPNPQEDFVNRPDLVKAREIADKLAPEFS
SHDKYPTVVIYFHVAAHHLQSWREALFYFIIAQKQIERDEEVFWEAFQHV
GLPPEVKDINYLSRQAGRVPSRSRLALCGTFANTKAEERAKHALSQWRSD
LNARLMAYRLQGDDVRDAVEVMPMSQAVYRRIRPSGPPTQPSQITSCSIS
PESTFLLSFLQASWSSERKIRRHLDRLDKYLDEVTGSASTRGGPAERAEL
YIDPSYPSAHRIWHQFSDSNAMVACLRKDYANFLEGGAKFRARVNHVEQV
FAPVGCAISQKMFPPTLSRRLSSSCYMPLVGYGTRVYRGREREGTLTLLD
AVRTALRAGCRLLDCSPDYGTQPEVGEALRQMFKAHETQRERLFIVSSLS
IEVAMNHGDVSETNKDILLHGKLWKCC

mRNA from alignment at CM002455.1:916972..919497+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna375 ID=rna375|Name=rna375|organism=Nannochloropsis gaditana|type=mRNA|length=2526bp|location=Sequence derived from alignment at CM002455.1:916972..919497+ (Nannochloropsis gaditana)
CAAAATGGTAAAACAATCAAAAATCGCGCACTACTTCAAACGTTTGAATG
TGTCTTCGGATGCGAGCACTCATACATATCTTTGGATGCGCTCCCAGTTA
CCCTTTTCGTTATAAATTACCCCAGGAGGTTCGCCGGGTGCGGGACTCTC
TCCATGTCCCCCCTGACATGGCAAAGTGGAGGGTGTTTTTTCTTCTACTA
CTTGGCGTGACTTCCACTCGCAGCTTCCGTTTCTTGCCGGTTAGATCCCC
ATCATCTCCTGCGCTCCTTCCGTCTTGCTGGGCGATCGCATTATCGCGAA
CGACTTTAACGCCTCTTTACTCAGACGCTTTCTTCAATTTTGAAGGCCTT
CAGAAGCGACTGAATTTGACGCATTTCGATGATTCTTCTCAGCAtagccc
tcctccactgcgcCCCAATCCACAAGAAGATTTCGTAAATCGACCTGATT
TAGTTAAGGCGCGGGAAATTGCTGATAAACTCGCCCCGGAGTTCTCGTCG
CACGACAAGTATCCGACAGTTGTCATCTATTTTCATGTAGCAGCACACCA
CCTGCAAAGCTGGCGAGAGGCTCTATTTTATTTCATTATAGCACAGAAGC
AGATAgaaagagatgaggaggtATTTTGGGAAGCGTTCCAGCACGTAGGG
CTTCCACCCGAAGTCAAAGACATCAATTATTTAAGTAGGCAAGCAGGGCG
TgttccctcccgttcccgccTGGCGTTATGCGGGACATTTGCGAACACGA
AGGCAGAAGAGCGGGCAAAGCACGCGCTTTCTCAATGGCGATCTGATCTC
AATGCCCGTTTGATGGCTTATCGCTTACAAGGCGACGATGTAAGAGATGC
TGTGGAGGTCATGCCCATGAGTCAAGCTGTTTACCGACGTATACGGCCTT
CAGGACCCCCGACGCAGCCATCGCAAATCACTTCCTGTTCGATTTCACCA
GAGTCGAcatttctcctttcctttttacAAGCAAGTTGGTCCTCTGAGCG
CAAGATCCGTCGGCATTTGGATCGTCTAGATAAGTATCTGGACGAAGTGA
CAGGGTCTGCTTCTACGCGCGGAGGACCGGCTGAGCGCGCTGAATTGTAC
ATTGATCCCTCCTACCCGAGCGCACATCGGATTTGGCATCAGTTCTCAGA
CAGTAACGCTATGGTGGCATGCTTAAGGAAAGACTACGCAAATTTCTTAG
AGGGTGGCGCTAAATTTCGAGCACGCGTTAATCATGTTGAGCAGGTTTTT
GCGCCGGTTGGATGCGCAATCTCCCAAAAAATGTTTCCACCTACCTTATC
AAGACGgctttcatcctcctgctACATGCCCTTGGTGGGTTATGGAACGC
GGGTCTACCGGGGGCGCGAGCGAGAAGGGACGTTGACGTTGCTCGACGCT
GTCCGCACGGCCTTGCGCGCGGGATGCCGACTGCTCGACTGCAGCCCAGA
TTACGGTACTCAGCCTGAAGTCGGAGAAGCATTGCGTCAAATGTTTAAAG
CGCATGAGACACAACGCGAGCGGCTCTTCATAGTGAGCAGTCTGAGCATT
GAAGTAGCGATGAACCATGGTGATGTGTCCGAGGTCAGTACGCATGTGAA
CGAGTCAATCCAGCAGCTACATTGCGACTATCTCGATCTACTTCTACTAC
CGTACATCATAGACAAACAAAGACATATTGCTGCATGGAAAGCTATGGAA
GTGTTGCTGAGTGAAGGTGTGGTGCGACACATAGGCGTCGGAGGCTTTCC
CCTGTCTTCATTGAAAGCTCTATGCGAGGATCCCACTTTGACATGGCAAC
CCGCGGTTTGTCAGCTAGAGCATCACCCTTTTTATCGTCCCGATTCTTTG
GTAGAGTTCTGCGGGGAGCGTCACATCCAATTACTGGCGAACACCCCACT
TGGCCGACCAGCACTCTCTCGGCCACCGGGCCAAAATCCTCTGAAGGAGC
CTTTGATTGAAATGTCGTCTACAGCGCTTGAATGTAGCCCTGCACAAATT
GCTCTGCGATGGGCAGTGCAGCAAGGTGTGGCTGTTATCCCGAACTCTCT
GTGTCGCACTCATATTCTAGAAAATTCTGATCTGCATTCTTTCACGTTAG
CTCCTTTTCGAATAGAAGTGCTGCACGAAATGGCAGCAGTTCGTAACATG
AGCTTTACTGACGGTTCTTCTGTccggaagggagaagagagagcgcCTTA
TACGTTAGAAGAAATAAGGGCCCATGGATTTGTCTATGATGATGGCGGTA
CCTTGATCGCACCGGGAAACCCATATGAGTATTTGCAGCTCACAATCGAT
GTGTTCGAACGATTGGACTTAAGCGATGTTCCGGAACTGGCTTTAGCGCC
CCGAGAGATAGACGGGGCATTCCCAGGCATGGATGTTGAGCCGATTGAGT
GCGATGAAGAGATCACGAACGAGCAACCATGAAAATAAAGAGTTTGCAAA
CGAACGATGTTACATGCAAATATTGTCATTTAGCTTAGGTGAATTTGTGA
CGTTACTTCTTCATCGTGTACATTCC

Coding sequence (CDS) from alignment at CM002455.1:916972..919497+

>rna375 ID=rna375|Name=rna375|organism=Nannochloropsis gaditana|type=CDS|length=3168bp|location=Sequence derived from alignment at CM002455.1:916972..919497+ (Nannochloropsis gaditana)
ATGTGTCTTCGGATGCGAGCACTCATACATATCTTTGGATGCGCTCCCAG
TTACCCTTTTCGTTATAAATTACCCCAGGAGGTTCGCCGGGTGCGGGACT
CTCTCCATGTCCCCCCTGACATGGCAAAGTGGAGGGTGTTTTTTCTTCTA
CTACTTGGCGTGACTTCCACTCGCAGCTTCCGTTTCTTGCCGGTTAGATC
CCCATCATCTCCTGCGCTCCTTCCGTCTTGCTGGGCGATCGCATTATCGC
GAACGACTTTAACGCCTCTTTACTCAGACGCTTTCTTCAATTTTGAAGGC
CTTCAGAAGCGACTGAATTTGACGCATTTCGATGATTCTTCTCAGCAtag
ccctcctccactgcgcCCCAATCCACAAGAAGATTTCGTAAATCGACCTG
ATTTAGTTAAGGCGCGGGAAATTGCTGATAAACTCGCCCCGGAGTTCTCG
TCGCACGACAAGTATCCGACAGTTGTCATCTATTTTCATGTAGCAGCACA
CCACCTGCAAAGCTGGCGAGAGGCTCTATTTTATTTCATTATAGCACAGA
AGCAGATAgaaagagatgaggaggtATTTTGGGAAGCGTTCCAGCACGTA
GGGCTTCCACCCGAAGTCAAAGACATCAATTATTTAAGTAGGCAAGCAGG
GCGTgttccctcccgttcccgccTGGCGTTATGCGGGACATTTGCGAACA
CGAAGGCAGAAGAGCGGGCAAAGCACGCGCTTTCTCAATGGCGATCTGAT
CTCAATGCCCGTTTGATGGCTTATCGCTTACAAGGCGACGATGTAAGAGA
TGCTGTGGAGGTCATGCCCATGAGTCAAGCTGTTTACCGACGTATACGGC
CTTCAGGACCCCCGACGCAGCCATCGCAAATCACTTCCTGTTCGATTTCA
CCAGAGTCGAcatttctcctttcctttttacAAGCAAGTTGGTCCTCTGA
GCGCAAGATCCGTCGGCATTTGGATCGTCTAGATAAGTATCTGGACGAAG
TGACAGGGTCTGCTTCTACGCGCGGAGGACCGGCTGAGCGCGCTGAATTG
TACATTGATCCCTCCTACCCGAGCGCACATCGGATTTGGCATCAGTTCTC
AGACAGTAACGCTATGGTGGCATGCTTAAGGAAAGACTACGCAAATTTCT
TAGAGGGTGGCGCTAAATTTCGAGCACGCGTTAATCATGTTGAGCAGGTT
TTTGCGCCGGTTGGATGCGCAATCTCCCAAAAAATGTTTCCACCTACCTT
ATCAAGACGgctttcatcctcctgctACATGCCCTTGGTGGGTTATGGAA
CGCGGGTCTACCGGGGGCGCGAGCGAGAAGGGACGTTGACGTTGCTCGAC
GCTGTCCGCACGGCCTTGCGCGCGGGATGCCGACTGCTCGACTGCAGCCC
AGATTACGGTACTCAGCCTGAAGTCGGAGAAGCATTGCGTCAAATGTTTA
AAGCGCATGAGACACAACGCGAGCGGCTCTTCATAGTGAGCAGTCTGAGC
ATTGAAGTAGCGATGAACCATGGTGATGTGTCCGAGACAAACAAAGACAT
ATTGCTGCATGGAAAGCTATGGAAGTGTTGCTGAATGTGTCTTCGGATGC
GAGCACTCATACATATCTTTGGATGCGCTCCCAGTTACCCTTTTCGTTAT
AAATTACCCCAGGAGGTTCGCCGGGTGCGGGACTCTCTCCATGTCCCCCC
TGACATGGCAAAGTGGAGGGTGTTTTTTCTTCTACTACTTGGCGTGACTT
CCACTCGCAGCTTCCGTTTCTTGCCGGTTAGATCCCCATCATCTCCTGCG
CTCCTTCCGTCTTGCTGGGCGATCGCATTATCGCGAACGACTTTAACGCC
TCTTTACTCAGACGCTTTCTTCAATTTTGAAGGCCTTCAGAAGCGACTGA
ATTTGACGCATTTCGATGATTCTTCTCAGCAtagccctcctccactgcgc
CCCAATCCACAAGAAGATTTCGTAAATCGACCTGATTTAGTTAAGGCGCG
GGAAATTGCTGATAAACTCGCCCCGGAGTTCTCGTCGCACGACAAGTATC
CGACAGTTGTCATCTATTTTCATGTAGCAGCACACCACCTGCAAAGCTGG
CGAGAGGCTCTATTTTATTTCATTATAGCACAGAAGCAGATAgaaagaga
tgaggaggtATTTTGGGAAGCGTTCCAGCACGTAGGGCTTCCACCCGAAG
TCAAAGACATCAATTATTTAAGTAGGCAAGCAGGGCGTgttccctcccgt
tcccgccTGGCGTTATGCGGGACATTTGCGAACACGAAGGCAGAAGAGCG
GGCAAAGCACGCGCTTTCTCAATGGCGATCTGATCTCAATGCCCGTTTGA
TGGCTTATCGCTTACAAGGCGACGATGTAAGAGATGCTGTGGAGGTCATG
CCCATGAGTCAAGCTGTTTACCGACGTATACGGCCTTCAGGACCCCCGAC
GCAGCCATCGCAAATCACTTCCTGTTCGATTTCACCAGAGTCGAcatttc
tcctttcctttttacAAGCAAGTTGGTCCTCTGAGCGCAAGATCCGTCGG
CATTTGGATCGTCTAGATAAGTATCTGGACGAAGTGACAGGGTCTGCTTC
TACGCGCGGAGGACCGGCTGAGCGCGCTGAATTGTACATTGATCCCTCCT
ACCCGAGCGCACATCGGATTTGGCATCAGTTCTCAGACAGTAACGCTATG
GTGGCATGCTTAAGGAAAGACTACGCAAATTTCTTAGAGGGTGGCGCTAA
ATTTCGAGCACGCGTTAATCATGTTGAGCAGGTTTTTGCGCCGGTTGGAT
GCGCAATCTCCCAAAAAATGTTTCCACCTACCTTATCAAGACGgctttca
tcctcctgctACATGCCCTTGGTGGGTTATGGAACGCGGGTCTACCGGGG
GCGCGAGCGAGAAGGGACGTTGACGTTGCTCGACGCTGTCCGCACGGCCT
TGCGCGCGGGATGCCGACTGCTCGACTGCAGCCCAGATTACGGTACTCAG
CCTGAAGTCGGAGAAGCATTGCGTCAAATGTTTAAAGCGCATGAGACACA
ACGCGAGCGGCTCTTCATAGTGAGCAGTCTGAGCATTGAAGTAGCGATGA
ACCATGGTGATGTGTCCGAGACAAACAAAGACATATTGCTGCATGGAAAG
CTATGGAAGTGTTGCTGA

Synonyms

Publications