rna3740, rna3740 (mRNA) Nannochloropsis gaditana

Overview
Namerna3740
Unique Namerna3740
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length201
Alignment locationCM002461.1:1101887..1103117 +

Link to JBrowse

Properties
Property NameValue
Productsam domain and hd domain-containing protein
Orig transcript idgnl|cribi|Naga_101585g1.7118.mrna
Orig protein idgnl|cribi|Naga_101585g1.7118
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1101887..1103117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101585g1gene3603Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3740rna3740-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26942.1cds3731Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3740 ID=rna3740|Name=rna3740|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGAAGTCCCAGGTCCCCCTCTCCACATTTCCTTCAAACCGTCCTATTGA
AAAGCATACGTCCCATGATTCTTCTCTAGGCATATCCCCCATGGATAGTG
TCCGACATCCTTTCGAAAGCATCGCGGAAACGATCAACGGCGCCGCGGTC
CTGCTGGATGCCGGAGCAGGAGAGGTATCGCTCGCTGGGCAGGCGGTGTA
A
back to top

protein sequence of rna3740

>rna3740-protein ID=rna3740-protein|Name=rna3740|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MEHGTAIFSIEHEKEAGEGGGGSRGAAAGYVRMEESLEWEDDEWQCTQDE
YPSADHVGRVPFNDHLQGLVPLPPGSGRHATGGGREGGGGAKRPYPSPFS
LPPLEADGKKAKAPGPSTDPPPSLPPSLPSALPPALPPRRVTRRRFDCNL
YGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVA
HLAGEFVKTLVRNQPDLLREGR
back to top

mRNA from alignment at CM002461.1:1101887..1103117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3740 ID=rna3740|Name=rna3740|organism=Nannochloropsis gaditana|type=mRNA|length=1231bp|location=Sequence derived from alignment at CM002461.1:1101887..1103117+ (Nannochloropsis gaditana)
ACTAGAAATAGGTGCAGGTAATTCTAGGGACGCATTATGGAGCATGGTAC
GGCCATTTTCAGCATAGAACACGAAAAAGAAGCTGGCGAGGGTGGGGGTG
GCTCAAGGGGAGCCGCAGCGGGTTACGTGCGAATGGAGGAAAGCTTAGAG
TGGGAAGACGATGAATGGCAATGCACGCAGGTAAGGATGAGAGTAGCATT
CCTGTCCCTCGGTGCACAAGGACCAGTGAGACGGAAAAGATGTCGAGAAA
AAGATGAGAGACGGGAGTATGGCGAGGACacaagcacggcctccgTCGCA
ACCCAACGTGCGCTGTCCCTTATTGTCGCAGAGCGTGCACTTTGAGAacc
gggaaagagggggccCCAAAGACGTCGCTACTCGTGTCATCCCGTGGCTC
GATGCCCGTGCGAAGACGTCGGGCGTCATTTCACTCGAGTCACAGAGAAG
CGACTGCGCACGTGAGAGAgcacttcccccccgcccgagccCTCCTGACC
GCATTGCTCAacacttcccctccccccctccctcccctcttcccgcccgc
caccaGGACGAGTACCCCTCCGCGGACCACGTGGGACGTGTACCTTTCAA
CGaccacctccaaggcctcgtccctctccctcccggctcaGGAAGGCATG
cgaccgggggagggagggaaggaggaggaggggcaaaacGACCCTACCCG
TCCCCCttcagccttcctcccctggaAGCGGACGGCAAAAAAGCAAAGGC
TCCTGGACCGAGCAccgaccctcctccctccctccctccctcactccctt
ctgccctcccgcccgccctcccacctcgcCGGGTCACCCGTCGCCGGTTC
GACTGCAACCTGTATGGGCCCATATACATGGAAGGGTTGTGTCTGGCTAT
CATTGATACCCCTCAGTTCCAGCGCCTCGGTAGTATCGCGCAGCTGGGCG
CCTGCCCGCTTGTCTACCGGGGGGCTACCCACAccaggtcgggagggaga
gacggagggacggagggacggagggacggaggagggacatAGTGAGATGT
ATCATTCTGAGCTTGGATCGAGAGTAGTCAcccccgtgtcctccctccct
ccctccctccctccctccctccctccctccccgcccaggcTCCAGCACTC
CTTGGGCGTGGCCCATCTAGCCGGGGAGTTCGTGAAGACTCTGGTCAGGA
ACCAGCCAGACCTCCTCCGAGAGGGTAGGGA
back to top

Coding sequence (CDS) from alignment at CM002461.1:1101887..1103117+

>rna3740 ID=rna3740|Name=rna3740|organism=Nannochloropsis gaditana|type=CDS|length=2004bp|location=Sequence derived from alignment at CM002461.1:1101887..1103117+ (Nannochloropsis gaditana)
ATGGAGCATGGTACGGCCATTTTCAGCATAGAACACGAAAAAGAAGCTGG
CGAGGGTGGGGGTGGCTCAAGGGGAGCCGCAGCGGGTTACGTGCGAATGG
AGGAAAGCTTAGAGTGGGAAGACGATGAATGGCAATGCACGCAGGACGAG
TACCCCTCCGCGGACCACGTGGGACGTGTACCTTTCAACGaccacctcca
aggcctcgtccctctccctcccggctcaGGAAGGCATGcgaccgggggag
ggagggaaggaggaggaggggcaaaacGACCCTACCCGTCCCCCttcagc
cttcctcccctggaAGCGGACGGCAAAAAAGCAAAGGCTCCTGGACCGAG
CAccgaccctcctccctccctccctccctcactcccttctgccctcccgc
ccgccctcccacctcgcCGGGTCACCCGTCGCCGGTTCGACTGCAACCTG
TATGGGCCCATATACATGGAAGGGTTGTGTCTGGCTATCATTGATACCCC
TCAGTTCCAGCGCCTCGGTAGTATCGCGCAGCTGGGCGCCTGCCCGCTTG
TCTACCGGGGGGCTACCCACAccaggcTCCAGCACTCCTTGGGCGTGGCC
CATCTAGCCGGGGAGTTCGTGAAGACTCTGGTCAGGAACCAGCCAGACCT
CCTCCGAGAGGGTAGGGAATGGAGCATGGTACGGCCATTTTCAGCATAGA
ACACGAAAAAGAAGCTGGCGAGGGTGGGGGTGGCTCAAGGGGAGCCGCAG
CGGGTTACGTGCGAATGGAGGAAAGCTTAGAGTGGGAAGACGATGAATGG
CAATGCACGCAGGACGAGTACCCCTCCGCGGACCACGTGGGACGTGTACC
TTTCAACGaccacctccaaggcctcgtccctctccctcccggctcaGGAA
GGCATGcgaccgggggagggagggaaggaggaggaggggcaaaacGACCC
TACCCGTCCCCCttcagccttcctcccctggaAGCGGACGGCAAAAAAGC
AAAGGCTCCTGGACCGAGCAccgaccctcctccctccctccctccctcac
tcccttctgccctcccgcccgccctcccacctcgcCGGGTCACCCGTCGC
CGGTTCGACTGCAACCTGTATGGGCCCATATACATGGAAGGGTTGTGTCT
GGCTATCATTGATACCCCTCAGTTCCAGCGCCTCGGTAGTATCGCGCAGC
TGGGCGCCTGCCCGCTTGTCTACCGGGGGGCTACCCACAccaggcTCCAG
CACTCCTTGGGCGTGGCCCATCTAGCCGGGGAGTTCGTGAAGACTCTGGT
CAGGAACCAGCCAGACCTCCTCCGAGAGGGTAGGGAATGGAGCATGGTAC
GGCCATTTTCAGCATAGAACACGAAAAAGAAGCTGGCGAGGGTGGGGGTG
GCTCAAGGGGAGCCGCAGCGGGTTACGTGCGAATGGAGGAAAGCTTAGAG
TGGGAAGACGATGAATGGCAATGCACGCAGGACGAGTACCCCTCCGCGGA
CCACGTGGGACGTGTACCTTTCAACGaccacctccaaggcctcgtccctc
tccctcccggctcaGGAAGGCATGcgaccgggggagggagggaaggagga
ggaggggcaaaacGACCCTACCCGTCCCCCttcagccttcctcccctgga
AGCGGACGGCAAAAAAGCAAAGGCTCCTGGACCGAGCAccgaccctcctc
cctccctccctccctcactcccttctgccctcccgcccgccctcccacct
cgcCGGGTCACCCGTCGCCGGTTCGACTGCAACCTGTATGGGCCCATATA
CATGGAAGGGTTGTGTCTGGCTATCATTGATACCCCTCAGTTCCAGCGCC
TCGGTAGTATCGCGCAGCTGGGCGCCTGCCCGCTTGTCTACCGGGGGGCT
ACCCACAccaggcTCCAGCACTCCTTGGGCGTGGCCCATCTAGCCGGGGA
GTTCGTGAAGACTCTGGTCAGGAACCAGCCAGACCTCCTCCGAGAGGGTA
GGGA
back to top
Synonyms
Publications