EWM26942.1, cds3731 (CDS) Nannochloropsis gaditana

Overview
NameEWM26942.1
Unique Namecds3731
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1101923..1102066 +
Alignment locationCM002461.1:1102443..1102873 +
Alignment locationCM002461.1:1103025..1103117 +

Link to JBrowse

Properties
Property NameValue
End range.
End range1103117
Protein idEWM26942.1
Productsam domain and hd domain-containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101585g1.7118.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1101923..1102066 +
CM002461.1supercontigCM002461.1:1102443..1102873 +
CM002461.1supercontigCM002461.1:1103025..1103117 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0009605response to external stimulus
GO:0009607response to biotic stimulus
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR006674HD_domain
Homology
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|585109086|gb|EWM26942.1| (sam domain and hd domain-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 448.743 bits (1153), Expect = 1.626e-159
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:    1 MEHGTAIFSIEHEKEAGEGGGGSRGAAAGYVRMEESLEWEDDEWQCTQDEYPSADHVGRVPFNDHLQGLVPLPPGSGRHATGGGREGGGGAKRPYPSPFSLPPLEADGKKAKAPGPSTDPPPSLPPSLPSALPPALPPRRVTRRRFDCNLYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDLLREGR 222
            MEHGTAIFSIEHEKEAGEGGGGSRGAAAGYVRMEESLEWEDDEWQCTQDEYPSADHVGRVPFNDHLQGLVPLPPGSGRHATGGGREGGGGAKRPYPSPFSLPPLEADGKKAKAPGPSTDPPPSLPPSLPSALPPALPPRRVTRRRFDCNLYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDLLREGR
Sbjct:    1 MEHGTAIFSIEHEKEAGEGGGGSRGAAAGYVRMEESLEWEDDEWQCTQDEYPSADHVGRVPFNDHLQGLVPLPPGSGRHATGGGREGGGGAKRPYPSPFSLPPLEADGKKAKAPGPSTDPPPSLPPSLPSALPPALPPRRVTRRRFDCNLYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDLLREGR 222          
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|1199340995|ref|XP_012714411.2| (deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like, partial [Fundulus heteroclitus])

HSP 1 Score: 83.1889 bits (204), Expect = 8.990e-17
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 0
Query:  140 RVTRRRFDCNLYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDL 217
            R   + F+  ++G + M+ L + IIDTPQFQRL +I QLG    VY GATH+R +HS+GVA+LAGE V  L+ NQP+L
Sbjct:   15 RRDYKVFNDPIHGLVKMDPLLVKIIDTPQFQRLRNIRQLGGKSYVYPGATHSRFEHSIGVAYLAGELVHALMENQPEL 92          
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|1020571528|ref|XP_016113763.1| (PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like [Sinocyclocheilus grahami])

HSP 1 Score: 87.8113 bits (216), Expect = 1.449e-16
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 0
Query:  135 ALPPRRVTRRRFDCNLYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDL 217
             L   +  R+ F+  ++G I +  L + IIDTPQFQRL  I QLG   LVY GATHTR +HSLGVAHLAG  +KTL  NQP+L
Sbjct:   31 CLDFSKDIRKTFNDPIHGQIELHPLLVKIIDTPQFQRLRYIKQLGTKYLVYPGATHTRFEHSLGVAHLAGCLLKTLHENQPEL 113          
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|908423295|ref|XP_013073030.1| (PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like [Biomphalaria glabrata])

HSP 1 Score: 86.6557 bits (213), Expect = 2.693e-16
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 0
Query:  150 LYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDL 217
            ++G I +   CLAIIDTPQFQRL  I QLG C  VY GA+H R +HSLGV +LAG+F +TL +NQP L
Sbjct:  142 IHGLIKLHPACLAIIDTPQFQRLRYIKQLGMCYYVYPGASHNRFEHSLGVCYLAGQFARTLQKNQPYL 209          
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|1126209302|ref|XP_019638355.1| (PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like [Branchiostoma belcheri])

HSP 1 Score: 87.0409 bits (214), Expect = 2.864e-16
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0
Query:  150 LYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDL 217
            ++G I M  LC+ IIDTPQFQRL  I QLGAC  V+ GA+H R +H LGV HLAG  VKTL + QP+L
Sbjct:  115 IHGHIEMHPLCIKIIDTPQFQRLRFIKQLGACYWVFPGASHNRFEHCLGVCHLAGCLVKTLRKRQPEL 182          
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|1199343227|ref|XP_021170898.1| (deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like, partial [Fundulus heteroclitus])

HSP 1 Score: 80.8777 bits (198), Expect = 4.102e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 0
Query:  131 ALPPALPPRRVTRRR----FDCNLYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDL 217
            A P +   +  T RR    F+  ++G + M+ L + IIDTP FQRL +I QLG    VY GATH+R +HS+GVA+LAGE V+ L+ NQ +L
Sbjct:    2 AAPQSTADKTKTSRRDYKVFNDPIHGLVKMDPLLVKIIDTPHFQRLRNIKQLGGTSYVYPGATHSRFEHSIGVAYLAGELVQALMENQREL 92          
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|966640207|gb|KTF75121.1| (hypothetical protein cypCar_00042523 [Cyprinus carpio])

HSP 1 Score: 84.3445 bits (207), Expect = 4.156e-16
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 0
Query:  144 RRFDCNLYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDL 217
            R F+  ++G I +  L + +IDTPQFQRL  I QLG   LVY GATHTR +HSLGVAHLAG  +KTL  NQPDL
Sbjct:   18 RIFNDPVHGHIELHPLLVKMIDTPQFQRLRHIKQLGTKYLVYPGATHTRFEHSLGVAHLAGCLLKTLDENQPDL 91          
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|908489160|ref|XP_013094753.1| (PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like, partial [Biomphalaria glabrata])

HSP 1 Score: 86.6557 bits (213), Expect = 4.856e-16
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 0
Query:  150 LYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDL 217
            ++G I +   CLAIIDTPQFQRL +I QLG C  VY GA H R +HSLGV +LAG+F +TL +NQP L
Sbjct:  109 IHGHIELHPACLAIIDTPQFQRLRNIKQLGMCYHVYPGAAHNRFEHSLGVCYLAGQFARTLQKNQPYL 176          
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|260819264|ref|XP_002604957.1| (hypothetical protein BRAFLDRAFT_126695 [Branchiostoma floridae] >gi|229290286|gb|EEN60967.1| hypothetical protein BRAFLDRAFT_126695 [Branchiostoma floridae])

HSP 1 Score: 86.2705 bits (212), Expect = 5.496e-16
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0
Query:  150 LYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDL 217
            ++G I M  LC+ IIDTPQFQRL  I QLGAC  V+ GA+H R +H LGV HLAG  VKTL + QP+L
Sbjct:  117 IHGHIEMHPLCIKIIDTPQFQRLRFIKQLGACYWVFPGASHNRFEHCLGVYHLAGCLVKTLRKRQPEL 184          
BLAST of EWM26942.1 vs. NCBI_GenBank
Match: gi|780109528|ref|XP_011676295.1| (PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like [Strongylocentrotus purpuratus])

HSP 1 Score: 81.2629 bits (199), Expect = 5.615e-16
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 0
Query:  136 LPPRRVTRRRFDCNLYGPIYMEGLCLAIIDTPQFQRLGSIAQLGACPLVYRGATHTRLQHSLGVAHLAGEFVKTLVRNQPDL 217
            + P+ +  + F+ +++G I  + L + IIDTPQFQRL  I QLG C  V+ GA H R +HSLGV +LAG  V++L R QP+L
Sbjct:   17 ISPQSLKTKVFNDSVHGHIDFDPLLIEIIDTPQFQRLRFIKQLGCCYFVFPGAAHNRFEHSLGVCYLAGMLVRSLQRKQPEL 98          
The following BLAST results are available for this feature:
BLAST of EWM26942.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109086|gb|EWM26942.1|1.626e-159100.00sam domain and hd domain-containing protein, parti... [more]
gi|1199340995|ref|XP_012714411.2|8.990e-1752.56deoxynucleoside triphosphate triphosphohydrolase S... [more]
gi|1020571528|ref|XP_016113763.1|1.449e-1655.42PREDICTED: deoxynucleoside triphosphate triphospho... [more]
gi|908423295|ref|XP_013073030.1|2.693e-1660.29PREDICTED: deoxynucleoside triphosphate triphospho... [more]
gi|1126209302|ref|XP_019638355.1|2.864e-1660.29PREDICTED: deoxynucleoside triphosphate triphospho... [more]
gi|1199343227|ref|XP_021170898.1|4.102e-1647.25deoxynucleoside triphosphate triphosphohydrolase S... [more]
gi|966640207|gb|KTF75121.1|4.156e-1660.81hypothetical protein cypCar_00042523 [Cyprinus car... [more]
gi|908489160|ref|XP_013094753.1|4.856e-1660.29PREDICTED: deoxynucleoside triphosphate triphospho... [more]
gi|260819264|ref|XP_002604957.1|5.496e-1660.29hypothetical protein BRAFLDRAFT_126695 [Branchiost... [more]
gi|780109528|ref|XP_011676295.1|5.615e-1647.56PREDICTED: deoxynucleoside triphosphate triphospho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3740rna3740Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications