|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_101205g2.8341.mrna |
| Orig protein id | gnl|cribi|Naga_101205g2.8341 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:1096866..1098771 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3738 ID=rna3738|Name=rna3738|organism=Nannochloropsis gaditana|type=mRNA|length=1076bp
CCTCTCCAAATTATTTAAAAATCCCGCCCTTTGTCTGAATCAACGAGAAG
ACAACGGAGAGCGAACGAGAGCGGATGCCTTTGGTTTTGGGACGGTGTTC
TTCTCTTTGGGTTACCGTCACGTGGTGGGCTTTTGTGGCCACGGTCATTT
AAGAAAGGCGACATAAAGCGGAGATTATTATATAAATCTGTTCCGTCCAA
TATGCCGTGCCCTCGCTCACAAGCCGTGCGGGGAGGTCAAGCGACTGCCT
TGGATATTGGGACTTTATCGAATACATGACATCGAATCATTGCCACAGCA
AATATCACAGTGGTGTCAACATTATAATTTGCGTGTTGTCAGCTTTGTGG
AGGTCTTCCCCACTTAGGTCAATGGCGCAGAGTCATCCGGGGATGGATAT
CAACAGCTCGAACTCTTCACCGAGGGAAGCGTCGCCGGTCTCTCTCCCCA
CGCCAATACGCCTTGTGTCCATCTCTCTCTCGTCGGGAATGGATATGAAG
GAAAAAACTGAGGATGCCCAGGATGAGGAACCCAAGCAGGAAGGAGGAAA
ATCTCACGGCGGGGCTATCCCCCTGCAGATAGACGAAGCAGCCGCCCCAT
CTCCGTCTTCAAAAGCTCGGGCGCAACCGCGACCGTGGTGGCTAAGCATC
CTGTTTGTGACCCTATCCTTTATCGTGATCGCTTCCGTCCTTGTGGCCAT
CATCATGCGGTACCATGAAGGCATTTTGACCGCCGCCCGCTGGTGTCAGG
AGCGACAACCCTGGTCGATAATTTTAAATGGCTGTATCATCGTCGGAGCC
AACATTTTAGGGTTTCCCACCATGCCAATTGAGGTACTGGCTGGTCTCAT
GTTCGGGTTTGGGGTCTCTACGCTCATGCTAACCGTATCCAAGCCCGTCG
GAGCCGTCCTGTGTGCGATGCTCAGCAGGCACCTCCTCCATTCCTGTGCC
GCTCGCCTCGTCTCATCCAACCAGGATTTCACGGCCCTCCGGGTGGCTTT
TAAGAAACGACCCTGGCGGTTGATGCTGCTGTTGCGGCTGGCGTTCATGC
CGGGCGTCATCAAAAAACTACGGTGA back to topprotein sequence of rna3738 >rna3738-protein ID=rna3738-protein|Name=rna3738|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPR
EASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPL
QIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGI
LTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEDFTALRVAFKKRPW
RLMLLLRLAFMPGVIKKLR back to topmRNA from alignment at CM002461.1:1096866..1098771+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3738 ID=rna3738|Name=rna3738|organism=Nannochloropsis gaditana|type=mRNA|length=1906bp|location=Sequence derived from alignment at CM002461.1:1096866..1098771+ (Nannochloropsis gaditana)
CCTCTCCAAATTATTTAAAAATCCCGCCCTTTGTCTGAATCAACGAGAAG
ACAACGGAGAGCGAACGAGAGCGGATGCCTTTGGTTTTGGGACGGTGTTC
TTCTCTTTGGGTTACCGTCACGTGGTGGGCTTTTGTGGCCACGGTCATTT
AAGAAAGGCGACATAAAGCGGAGATTATTATATAAATCTGTTCCGTCCAA
TATGCCGTGCCCTCGCTCACAAGCCGTGCGGGGAGGTCAAGCGACTGCCT
TGGATATTGGGACTTTATCGAATACATGACATCGAATCATTGCCACAGCA
AATATCACAGTGGTGTCAACATTATAATTTGCGTGTTGTCAGCTTTGTGG
AGGTCTTCCCCACTTAGGTCAATGGCGCAGAGTCATCCGGGGATGGATAT
CAACAGCTCGAACTCTTCACCGAGGGAAGCGTCGCCGGTCTCTCTCCCCA
CGCCAATACGCCTTGTGTCCATCTCTCTCTCGTCGGGAATGGATATGAAG
GAAAAAACTGAGGATGCCCAGGATGAGGAACCcaagcaggaaggaggaaa
atctCACGGCGGGGCTATCCCCCTGCAGATAGACGAAGCAGCCGCCCCAT
CTCCGTCTTCAAAAGCTCGGGCGCAACCGCGACCGTGGTGGCTAAGCATC
CTGTTTGTGACCCTATCCTTTATCGTGATCGCTTCCGTCCTTGTGGCCAT
CATCATGCGGTACCATGAAGGCATTTTGACCGGTAAGGGTCCCGGTGACT
TTAATGCGTCTGCCTTCAATCCCCTTGCATCGCTTCCTTACCTTCTCtca
ttcctctcccttctccaaaGAAAAACATTCGAAATATTTATAAATCATCC
GAAGGTTTTCATTTCGAGTCGATACAGCGTACATGGTCGCTGGGATCGCG
CCTGTGTCTGGCCACTGATTTCTCACTccctttcgctccctccccccctc
cctcctcccgtacCTTTCGCAGCCGCCCGCTGGTGTCAGGAGCGACAACC
CTGGTCGATAATTTTAAATGGCTGTATCATCGTCGGAGGTATGTCGTGCT
CACAAACCATCTTGTCcgcatcctccgcctccctctctttttctcaactt
tccctcccttcctcccagtcctgaggccccccccccatcgcgACCTCTCT
TCGCGGCCCATGTTCTTGCCTTGACCCGTGCATTCAGGCGTAGAACGATT
CCCTGAGGAAGTCACGACATGTCCCGACGCCGACGACaaccttcttttcc
tcgccctccctttccctccgtccctccctccctcccttcccccccccctc
cctccctccctccctccctccctccccaattTCTCCTCAGCCAACATTTT
AGGGTTTCCCACCATGCCAATTGAGGTACTGGCTGGTCTCATGTTCGGGT
TTGGGGTCTCTACGCTCATGCTAACCGTATCCAAGCCCGTCGGAGCCGTC
CTGTGTGCGATGCTCAgcaggtggggaaggagagggagggaaggagaggg
agggaaggagagggagggaaatagggaggggagggaggaagggaggggag
gggggggaggggagcaggtACGAAAATTTTGTGCTTTCACTTGTGATAta
tgttagggttagggtcgAGGGTAGGAGTCCCGTTAATCGACGAGCAGAGC
GTGTACTTCCCCGCGCTGTGCGCCTGCTCAACAtgtgtccctcccttcct
tcctccctccctccctccctccctgcctccctccctcctttcctttttgt
ctTGTcaggcacctcctccattcctgtGCCGCTCGCCTCGTCTCATCCAA
CCAGGATTTCACGGCCCTCCGGGTGGCTTTTAAGAAACGACCCTGGCGGt
tgatgctgctgttgcGGCTGGCGTTCATGCCGGGCGTCATCAAAAAACTA
CGgtga back to topCoding sequence (CDS) from alignment at CM002461.1:1096866..1098771+ >rna3738 ID=rna3738|Name=rna3738|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002461.1:1096866..1098771+ (Nannochloropsis gaditana)
ATGACATCGAATCATTGCCACAGCAAATATCACAGTGGTGTCAACATTAT
AATTTGCGTGTTGTCAGCTTTGTGGAGGTCTTCCCCACTTAGGTCAATGG
CGCAGAGTCATCCGGGGATGGATATCAACAGCTCGAACTCTTCACCGAGG
GAAGCGTCGCCGGTCTCTCTCCCCACGCCAATACGCCTTGTGTCCATCTC
TCTCTCGTCGGGAATGGATATGAAGGAAAAAACTGAGGATGCCCAGGATG
AGGAACCcaagcaggaaggaggaaaatctCACGGCGGGGCTATCCCCCTG
CAGATAGACGAAGCAGCCGCCCCATCTCCGTCTTCAAAAGCTCGGGCGCA
ACCGCGACCGTGGTGGCTAAGCATCCTGTTTGTGACCCTATCCTTTATCG
TGATCGCTTCCGTCCTTGTGGCCATCATCATGCGGTACCATGAAGGCATT
TTGACCGCCGCCCGCTGGTGTCAGGAGCGACAACCCTGGTCGATAATTTT
AAATGGCTGTATCATCGTCGGAGCCAACATTTTAGGGTTTCCCACCATGC
CAATTGAGGATTTCACGGCCCTCCGGGTGGCTTTTAAGAAACGACCCTGG
CGGttgatgctgctgttgcGGCTGGCGTTCATGCCGGGCGTCATCAAAAA
ACTACGgtgaATGACATCGAATCATTGCCACAGCAAATATCACAGTGGTG
TCAACATTATAATTTGCGTGTTGTCAGCTTTGTGGAGGTCTTCCCCACTT
AGGTCAATGGCGCAGAGTCATCCGGGGATGGATATCAACAGCTCGAACTC
TTCACCGAGGGAAGCGTCGCCGGTCTCTCTCCCCACGCCAATACGCCTTG
TGTCCATCTCTCTCTCGTCGGGAATGGATATGAAGGAAAAAACTGAGGAT
GCCCAGGATGAGGAACCcaagcaggaaggaggaaaatctCACGGCGGGGC
TATCCCCCTGCAGATAGACGAAGCAGCCGCCCCATCTCCGTCTTCAAAAG
CTCGGGCGCAACCGCGACCGTGGTGGCTAAGCATCCTGTTTGTGACCCTA
TCCTTTATCGTGATCGCTTCCGTCCTTGTGGCCATCATCATGCGGTACCA
TGAAGGCATTTTGACCGCCGCCCGCTGGTGTCAGGAGCGACAACCCTGGT
CGATAATTTTAAATGGCTGTATCATCGTCGGAGCCAACATTTTAGGGTTT
CCCACCATGCCAATTGAGGATTTCACGGCCCTCCGGGTGGCTTTTAAGAA
ACGACCCTGGCGGttgatgctgctgttgcGGCTGGCGTTCATGCCGGGCG
TCATCAAAAAACTACGgtgaATGACATCGAATCATTGCCACAGCAAATAT
CACAGTGGTGTCAACATTATAATTTGCGTGTTGTCAGCTTTGTGGAGGTC
TTCCCCACTTAGGTCAATGGCGCAGAGTCATCCGGGGATGGATATCAACA
GCTCGAACTCTTCACCGAGGGAAGCGTCGCCGGTCTCTCTCCCCACGCCA
ATACGCCTTGTGTCCATCTCTCTCTCGTCGGGAATGGATATGAAGGAAAA
AACTGAGGATGCCCAGGATGAGGAACCcaagcaggaaggaggaaaatctC
ACGGCGGGGCTATCCCCCTGCAGATAGACGAAGCAGCCGCCCCATCTCCG
TCTTCAAAAGCTCGGGCGCAACCGCGACCGTGGTGGCTAAGCATCCTGTT
TGTGACCCTATCCTTTATCGTGATCGCTTCCGTCCTTGTGGCCATCATCA
TGCGGTACCATGAAGGCATTTTGACCGCCGCCCGCTGGTGTCAGGAGCGA
CAACCCTGGTCGATAATTTTAAATGGCTGTATCATCGTCGGAGCCAACAT
TTTAGGGTTTCCCACCATGCCAATTGAGGATTTCACGGCCCTCCGGGTGG
CTTTTAAGAAACGACCCTGGCGGttgatgctgctgttgcGGCTGGCGTTC
ATGCCGGGCGTCATCAAAAAACTACGgtgaATGACATCGAATCATTGCCA
CAGCAAATATCACAGTGGTGTCAACATTATAATTTGCGTGTTGTCAGCTT
TGTGGAGGTCTTCCCCACTTAGGTCAATGGCGCAGAGTCATCCGGGGATG
GATATCAACAGCTCGAACTCTTCACCGAGGGAAGCGTCGCCGGTCTCTCT
CCCCACGCCAATACGCCTTGTGTCCATCTCTCTCTCGTCGGGAATGGATA
TGAAGGAAAAAACTGAGGATGCCCAGGATGAGGAACCcaagcaggaagga
ggaaaatctCACGGCGGGGCTATCCCCCTGCAGATAGACGAAGCAGCCGC
CCCATCTCCGTCTTCAAAAGCTCGGGCGCAACCGCGACCGTGGTGGCTAA
GCATCCTGTTTGTGACCCTATCCTTTATCGTGATCGCTTCCGTCCTTGTG
GCCATCATCATGCGGTACCATGAAGGCATTTTGACCGCCGCCCGCTGGTG
TCAGGAGCGACAACCCTGGTCGATAATTTTAAATGGCTGTATCATCGTCG
GAGCCAACATTTTAGGGTTTCCCACCATGCCAATTGAGGATTTCACGGCC
CTCCGGGTGGCTTTTAAGAAACGACCCTGGCGGttgatgctgctgttgcG
GCTGGCGTTCATGCCGGGCGTCATCAAAAAACTACGgtga back to top
|