EWM26944.1, cds3729 (CDS) Nannochloropsis gaditana

Overview
NameEWM26944.1
Unique Namecds3729
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1097141..1097597 +
Alignment locationCM002461.1:1097838..1097903 +
Alignment locationCM002461.1:1098206..1098240 +
Alignment locationCM002461.1:1098670..1098771 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26944.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101205g2.8341.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1097141..1097597 +
CM002461.1supercontigCM002461.1:1097838..1097903 +
CM002461.1supercontigCM002461.1:1098206..1098240 +
CM002461.1supercontigCM002461.1:1098670..1098771 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM26944.1 vs. NCBI_GenBank
Match: gi|585109091|gb|EWM26944.1| (hypothetical protein Naga_101205g2 [Nannochloropsis gaditana])

HSP 1 Score: 447.203 bits (1149), Expect = 5.373e-159
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 
Query:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 219
            MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR
Sbjct:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 219
[Close]
BLAST of EWM26944.1 vs. NCBI_GenBank
Match: gi|585109092|gb|EWM26945.1| (hypothetical protein Naga_101205g2 [Nannochloropsis gaditana])

HSP 1 Score: 427.557 bits (1098), Expect = 2.271e-150
Identity = 219/266 (82.33%), Postives = 219/266 (82.33%), Query Frame = 0 
Query:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIE-----------------------------------------------DFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 219
            MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIE                                               DFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR
Sbjct:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 266
[Close]
BLAST of EWM26944.1 vs. NCBI_GenBank
Match: gi|553183341|ref|XP_005853879.1| (hypothetical protein NGA_0471500 [Nannochloropsis gaditana CCMP526] >gi|422295177|gb|EKU22476.1| hypothetical protein NGA_0471500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 360.533 bits (924), Expect = 5.488e-121
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 
Query:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVG 174
            MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVG
Sbjct:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVG 174
The following BLAST results are available for this feature:
BLAST of EWM26944.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585109091|gb|EWM26944.1|5.373e-159100.00hypothetical protein Naga_101205g2 [Nannochloropsi... [more]
gi|585109092|gb|EWM26945.1|2.271e-15082.33hypothetical protein Naga_101205g2 [Nannochloropsi... [more]
gi|553183341|ref|XP_005853879.1|5.488e-121100.00hypothetical protein NGA_0471500 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3738rna3738Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications