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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_101205g2.8342.mrna |
| Orig protein id | gnl|cribi|Naga_101205g2.8342 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:1096866..1098771 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3737 ID=rna3737|Name=rna3737|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
AACGGGTGCATGAGATGACATTCATATTCTGGGTCTGGGCTAGTTCCCCG
ATCCCCCTGCGAAATATTCCCCGATAGCTTTCAACGGGCCGACAAGACTA
CCTTGATATGGCATGAAGGCATGTCCTGGCAGGTTTCCAGGCGTGAATGC
GCATGATCACGTTAGTAAATGCGTAAAAATGACCATGGAGGGTTACGTGG
TGTGGCGGTCGTCTCCACACAGGGACATTGTCAGAAAAAAGCACGACGTC
AGCCTTCCAGCTTTCGAACAGGAAGTCACCTACCGTGCAAGTAAACTCAT
AAGAAGTCATACCCTCCTTTCCCTCATTGGACGGCGTTCCAAACTCATTG
TTGCACGCGTATTGCAGGCGTATGTCGGGGACGGATGGCAATGGAGGAGG
AGTACTACCATGGATAGTAGGCCGCAGCGACACCGCTGCCACAGCTTGCC
TTCCACCCTACTCGATGGCGCCTGCATTTCTCTCCACGCTGATGCCGTCG
ACCGACTCCGCGTTTTCGGCCATGTCGTATGCCGGAACCAGCCGTAGCGA
CAGCCCTTGGGAGGCCAAAGACTCGATGAAGAAGGAGGTGGGGAAAGTAA
GGAGACGCCCAGGCAAACGGCGCGTGCACGAGGCGGCCCCGGCGGAGAAG
GAGGTCGAAAAGCCGGGCAGGACGATGCAGGGGCGACAACGACAACGAGC
ACCCAAAGGCTCGACGTGTATGCAGTGCAACCATGTCAAGACAAAGTGCA
GCGGTTTAGTCCCCTGGTAGGCTTTTTTTCCCCTTTCTC back to topprotein sequence of rna3737 >rna3737-protein ID=rna3737-protein|Name=rna3737|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPR
EASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPL
QIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGI
LTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTL
MLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLM
LLLRLAFMPGVIKKLR back to topmRNA from alignment at CM002461.1:1096866..1098771+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3737 ID=rna3737|Name=rna3737|organism=Nannochloropsis gaditana|type=mRNA|length=1906bp|location=Sequence derived from alignment at CM002461.1:1096866..1098771+ (Nannochloropsis gaditana)
CCTCTCCAAATTATTTAAAAATCCCGCCCTTTGTCTGAATCAACGAGAAG
ACAACGGAGAGCGAACGAGAGCGGATGCCTTTGGTTTTGGGACGGTGTTC
TTCTCTTTGGGTTACCGTCACGTGGTGGGCTTTTGTGGCCACGGTCATTT
AAGAAAGGCGACATAAAGCGGAGATTATTATATAAATCTGTTCCGTCCAA
TATGCCGTGCCCTCGCTCACAAGCCGTGCGGGGAGGTCAAGCGACTGCCT
TGGATATTGGGACTTTATCGAATACATGACATCGAATCATTGCCACAGCA
AATATCACAGTGGTGTCAACATTATAATTTGCGTGTTGTCAGCTTTGTGG
AGGTCTTCCCCACTTAGGTCAATGGCGCAGAGTCATCCGGGGATGGATAT
CAACAGCTCGAACTCTTCACCGAGGGAAGCGTCGCCGGTCTCTCTCCCCA
CGCCAATACGCCTTGTGTCCATCTCTCTCTCGTCGGGAATGGATATGAAG
GAAAAAACTGAGGATGCCCAGGATGAGGAACCcaagcaggaaggaggaaa
atctCACGGCGGGGCTATCCCCCTGCAGATAGACGAAGCAGCCGCCCCAT
CTCCGTCTTCAAAAGCTCGGGCGCAACCGCGACCGTGGTGGCTAAGCATC
CTGTTTGTGACCCTATCCTTTATCGTGATCGCTTCCGTCCTTGTGGCCAT
CATCATGCGGTACCATGAAGGCATTTTGACCGGTAAGGGTCCCGGTGACT
TTAATGCGTCTGCCTTCAATCCCCTTGCATCGCTTCCTTACCTTCTCtca
ttcctctcccttctccaaaGAAAAACATTCGAAATATTTATAAATCATCC
GAAGGTTTTCATTTCGAGTCGATACAGCGTACATGGTCGCTGGGATCGCG
CCTGTGTCTGGCCACTGATTTCTCACTccctttcgctccctccccccctc
cctcctcccgtacCTTTCGCAGCCGCCCGCTGGTGTCAGGAGCGACAACC
CTGGTCGATAATTTTAAATGGCTGTATCATCGTCGGAGGTATGTCGTGCT
CACAAACCATCTTGTCcgcatcctccgcctccctctctttttctcaactt
tccctcccttcctcccagtcctgaggccccccccccatcgcgACCTCTCT
TCGCGGCCCATGTTCTTGCCTTGACCCGTGCATTCAGGCGTAGAACGATT
CCCTGAGGAAGTCACGACATGTCCCGACGCCGACGACaaccttcttttcc
tcgccctccctttccctccgtccctccctccctcccttcccccccccctc
cctccctccctccctccctccctccccaattTCTCCTCAGCCAACATTTT
AGGGTTTCCCACCATGCCAATTGAGGTACTGGCTGGTCTCATGTTCGGGT
TTGGGGTCTCTACGCTCATGCTAACCGTATCCAAGCCCGTCGGAGCCGTC
CTGTGTGCGATGCTCAgcaggtggggaaggagagggagggaaggagaggg
agggaaggagagggagggaaatagggaggggagggaggaagggaggggag
gggggggaggggagcaggtACGAAAATTTTGTGCTTTCACTTGTGATAta
tgttagggttagggtcgAGGGTAGGAGTCCCGTTAATCGACGAGCAGAGC
GTGTACTTCCCCGCGCTGTGCGCCTGCTCAACAtgtgtccctcccttcct
tcctccctccctccctccctccctgcctccctccctcctttcctttttgt
ctTGTcaggcacctcctccattcctgtGCCGCTCGCCTCGTCTCATCCAA
CCAGGATTTCACGGCCCTCCGGGTGGCTTTTAAGAAACGACCCTGGCGGt
tgatgctgctgttgcGGCTGGCGTTCATGCCGGGCGTCATCAAAAAACTA
CGgtga back to topCoding sequence (CDS) from alignment at CM002461.1:1096866..1098771+ >rna3737 ID=rna3737|Name=rna3737|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002461.1:1096866..1098771+ (Nannochloropsis gaditana)
ATGACATCGAATCATTGCCACAGCAAATATCACAGTGGTGTCAACATTAT
AATTTGCGTGTTGTCAGCTTTGTGGAGGTCTTCCCCACTTAGGTCAATGG
CGCAGAGTCATCCGGGGATGGATATCAACAGCTCGAACTCTTCACCGAGG
GAAGCGTCGCCGGTCTCTCTCCCCACGCCAATACGCCTTGTGTCCATCTC
TCTCTCGTCGGGAATGGATATGAAGGAAAAAACTGAGGATGCCCAGGATG
AGGAACCcaagcaggaaggaggaaaatctCACGGCGGGGCTATCCCCCTG
CAGATAGACGAAGCAGCCGCCCCATCTCCGTCTTCAAAAGCTCGGGCGCA
ACCGCGACCGTGGTGGCTAAGCATCCTGTTTGTGACCCTATCCTTTATCG
TGATCGCTTCCGTCCTTGTGGCCATCATCATGCGGTACCATGAAGGCATT
TTGACCGCCGCCCGCTGGTGTCAGGAGCGACAACCCTGGTCGATAATTTT
AAATGGCTGTATCATCGTCGGAGCCAACATTTTAGGGTTTCCCACCATGC
CAATTGAGGTACTGGCTGGTCTCATGTTCGGGTTTGGGGTCTCTACGCTC
ATGCTAACCGTATCCAAGCCCGTCGGAGCCGTCCTGTGTGCGATGCTCAg
caggcacctcctccattcctgtGCCGCTCGCCTCGTCTCATCCAACCAGG
ATTTCACGGCCCTCCGGGTGGCTTTTAAGAAACGACCCTGGCGGttgatg
ctgctgttgcGGCTGGCGTTCATGCCGGGCGTCATCAAAAAACTACGgtg
aATGACATCGAATCATTGCCACAGCAAATATCACAGTGGTGTCAACATTA
TAATTTGCGTGTTGTCAGCTTTGTGGAGGTCTTCCCCACTTAGGTCAATG
GCGCAGAGTCATCCGGGGATGGATATCAACAGCTCGAACTCTTCACCGAG
GGAAGCGTCGCCGGTCTCTCTCCCCACGCCAATACGCCTTGTGTCCATCT
CTCTCTCGTCGGGAATGGATATGAAGGAAAAAACTGAGGATGCCCAGGAT
GAGGAACCcaagcaggaaggaggaaaatctCACGGCGGGGCTATCCCCCT
GCAGATAGACGAAGCAGCCGCCCCATCTCCGTCTTCAAAAGCTCGGGCGC
AACCGCGACCGTGGTGGCTAAGCATCCTGTTTGTGACCCTATCCTTTATC
GTGATCGCTTCCGTCCTTGTGGCCATCATCATGCGGTACCATGAAGGCAT
TTTGACCGCCGCCCGCTGGTGTCAGGAGCGACAACCCTGGTCGATAATTT
TAAATGGCTGTATCATCGTCGGAGCCAACATTTTAGGGTTTCCCACCATG
CCAATTGAGGTACTGGCTGGTCTCATGTTCGGGTTTGGGGTCTCTACGCT
CATGCTAACCGTATCCAAGCCCGTCGGAGCCGTCCTGTGTGCGATGCTCA
gcaggcacctcctccattcctgtGCCGCTCGCCTCGTCTCATCCAACCAG
GATTTCACGGCCCTCCGGGTGGCTTTTAAGAAACGACCCTGGCGGttgat
gctgctgttgcGGCTGGCGTTCATGCCGGGCGTCATCAAAAAACTACGgt
gaATGACATCGAATCATTGCCACAGCAAATATCACAGTGGTGTCAACATT
ATAATTTGCGTGTTGTCAGCTTTGTGGAGGTCTTCCCCACTTAGGTCAAT
GGCGCAGAGTCATCCGGGGATGGATATCAACAGCTCGAACTCTTCACCGA
GGGAAGCGTCGCCGGTCTCTCTCCCCACGCCAATACGCCTTGTGTCCATC
TCTCTCTCGTCGGGAATGGATATGAAGGAAAAAACTGAGGATGCCCAGGA
TGAGGAACCcaagcaggaaggaggaaaatctCACGGCGGGGCTATCCCCC
TGCAGATAGACGAAGCAGCCGCCCCATCTCCGTCTTCAAAAGCTCGGGCG
CAACCGCGACCGTGGTGGCTAAGCATCCTGTTTGTGACCCTATCCTTTAT
CGTGATCGCTTCCGTCCTTGTGGCCATCATCATGCGGTACCATGAAGGCA
TTTTGACCGCCGCCCGCTGGTGTCAGGAGCGACAACCCTGGTCGATAATT
TTAAATGGCTGTATCATCGTCGGAGCCAACATTTTAGGGTTTCCCACCAT
GCCAATTGAGGTACTGGCTGGTCTCATGTTCGGGTTTGGGGTCTCTACGC
TCATGCTAACCGTATCCAAGCCCGTCGGAGCCGTCCTGTGTGCGATGCTC
AgcaggcacctcctccattcctgtGCCGCTCGCCTCGTCTCATCCAACCA
GGATTTCACGGCCCTCCGGGTGGCTTTTAAGAAACGACCCTGGCGGttga
tgctgctgttgcGGCTGGCGTTCATGCCGGGCGTCATCAAAAAACTACGg
tgaATGACATCGAATCATTGCCACAGCAAATATCACAGTGGTGTCAACAT
TATAATTTGCGTGTTGTCAGCTTTGTGGAGGTCTTCCCCACTTAGGTCAA
TGGCGCAGAGTCATCCGGGGATGGATATCAACAGCTCGAACTCTTCACCG
AGGGAAGCGTCGCCGGTCTCTCTCCCCACGCCAATACGCCTTGTGTCCAT
CTCTCTCTCGTCGGGAATGGATATGAAGGAAAAAACTGAGGATGCCCAGG
ATGAGGAACCcaagcaggaaggaggaaaatctCACGGCGGGGCTATCCCC
CTGCAGATAGACGAAGCAGCCGCCCCATCTCCGTCTTCAAAAGCTCGGGC
GCAACCGCGACCGTGGTGGCTAAGCATCCTGTTTGTGACCCTATCCTTTA
TCGTGATCGCTTCCGTCCTTGTGGCCATCATCATGCGGTACCATGAAGGC
ATTTTGACCGCCGCCCGCTGGTGTCAGGAGCGACAACCCTGGTCGATAAT
TTTAAATGGCTGTATCATCGTCGGAGCCAACATTTTAGGGTTTCCCACCA
TGCCAATTGAGGTACTGGCTGGTCTCATGTTCGGGTTTGGGGTCTCTACG
CTCATGCTAACCGTATCCAAGCCCGTCGGAGCCGTCCTGTGTGCGATGCT
CAgcaggcacctcctccattcctgtGCCGCTCGCCTCGTCTCATCCAACC
AGGATTTCACGGCCCTCCGGGTGGCTTTTAAGAAACGACCCTGGCGGttg
atgctgctgttgcGGCTGGCGTTCATGCCGGGCGTCATCAAAAAACTACG
gtga back to top
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