EWM26945.1, cds3728 (CDS) Nannochloropsis gaditana

Overview
NameEWM26945.1
Unique Namecds3728
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1097141..1097597 +
Alignment locationCM002461.1:1097838..1097903 +
Alignment locationCM002461.1:1098206..1098335 +
Alignment locationCM002461.1:1098624..1098771 +

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Properties
Property NameValue
Protein idEWM26945.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101205g2.8342.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1097141..1097597 +
CM002461.1supercontigCM002461.1:1097838..1097903 +
CM002461.1supercontigCM002461.1:1098206..1098335 +
CM002461.1supercontigCM002461.1:1098624..1098771 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26945.1 vs. NCBI_GenBank
Match: gi|585109092|gb|EWM26945.1| (hypothetical protein Naga_101205g2 [Nannochloropsis gaditana])

HSP 1 Score: 541.576 bits (1394), Expect = 0.000e+0
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 266
            MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR
Sbjct:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 266          
BLAST of EWM26945.1 vs. NCBI_GenBank
Match: gi|585109091|gb|EWM26944.1| (hypothetical protein Naga_101205g2 [Nannochloropsis gaditana])

HSP 1 Score: 417.927 bits (1073), Expect = 1.444e-146
Identity = 215/266 (80.83%), Postives = 215/266 (80.83%), Query Frame = 0
Query:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 266
            MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIE    L                                               RVAFKKRPWRLMLLLRLAFMPGVIKKLR
Sbjct:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEDFTAL-----------------------------------------------RVAFKKRPWRLMLLLRLAFMPGVIKKLR 219          
BLAST of EWM26945.1 vs. NCBI_GenBank
Match: gi|553183341|ref|XP_005853879.1| (hypothetical protein NGA_0471500 [Nannochloropsis gaditana CCMP526] >gi|422295177|gb|EKU22476.1| hypothetical protein NGA_0471500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 362.073 bits (928), Expect = 8.548e-121
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVG 174
            MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVG
Sbjct:    1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVG 174          
BLAST of EWM26945.1 vs. NCBI_GenBank
Match: gi|1093272825|emb|SEI04504.1| (Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Rheinheimera pacifica])

HSP 1 Score: 61.2326 bits (147), Expect = 2.099e-7
Identity = 43/161 (26.71%), Postives = 77/161 (47.83%), Query Frame = 0
Query:  104 EAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAII-MRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLA-FMPGVI 262
            + A  S ++K+ A+PR    ++  V  S + +A VLV ++    HE +L   +W +++  W+ +L   I+    +L  P     V AG +FG    ++ + +   VGAVL  +++R+     A   V +      +        W+++LL RL  F PG I
Sbjct:    4 DTAQNSKAAKSDAKPRSKMSALFGVAGSLLFVAIVLVLLVHFGVHEEVLHLLQWFKQQGAWAPVLFMLIMAAVVVLLLPGALFTVGAGFVFGVAAGSVYVLLGTTVGAVLAFLIARYCFGQRAREFVMARAKLKLVNDELTPNGWKIVLLTRLIPFFPGKI 164          
The following BLAST results are available for this feature:
BLAST of EWM26945.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109092|gb|EWM26945.1|0.000e+0100.00hypothetical protein Naga_101205g2 [Nannochloropsi... [more]
gi|585109091|gb|EWM26944.1|1.444e-14680.83hypothetical protein Naga_101205g2 [Nannochloropsi... [more]
gi|553183341|ref|XP_005853879.1|8.548e-121100.00hypothetical protein NGA_0471500 [Nannochloropsis ... [more]
gi|1093272825|emb|SEI04504.1|2.099e-726.71Uncharacterized membrane protein YdjX, TVP38/TMEM6... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3737rna3737Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications