EWM26945.1, cds3728 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26945.1 vs. NCBI_GenBank
Match: gi|585109092|gb|EWM26945.1| (hypothetical protein Naga_101205g2 [Nannochloropsis gaditana]) HSP 1 Score: 541.576 bits (1394), Expect = 0.000e+0 Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query: 1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 266
MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR
Sbjct: 1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 266
BLAST of EWM26945.1 vs. NCBI_GenBank
Match: gi|585109091|gb|EWM26944.1| (hypothetical protein Naga_101205g2 [Nannochloropsis gaditana]) HSP 1 Score: 417.927 bits (1073), Expect = 1.444e-146 Identity = 215/266 (80.83%), Postives = 215/266 (80.83%), Query Frame = 0
Query: 1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIKKLR 266
MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIE L RVAFKKRPWRLMLLLRLAFMPGVIKKLR
Sbjct: 1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEDFTAL-----------------------------------------------RVAFKKRPWRLMLLLRLAFMPGVIKKLR 219
BLAST of EWM26945.1 vs. NCBI_GenBank
Match: gi|553183341|ref|XP_005853879.1| (hypothetical protein NGA_0471500 [Nannochloropsis gaditana CCMP526] >gi|422295177|gb|EKU22476.1| hypothetical protein NGA_0471500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 362.073 bits (928), Expect = 8.548e-121 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVG 174
MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVG
Sbjct: 1 MTSNHCHSKYHSGVNIIICVLSALWRSSPLRSMAQSHPGMDINSSNSSPREASPVSLPTPIRLVSISLSSGMDMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVG 174
BLAST of EWM26945.1 vs. NCBI_GenBank
Match: gi|1093272825|emb|SEI04504.1| (Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Rheinheimera pacifica]) HSP 1 Score: 61.2326 bits (147), Expect = 2.099e-7 Identity = 43/161 (26.71%), Postives = 77/161 (47.83%), Query Frame = 0
Query: 104 EAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAII-MRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLA-FMPGVI 262
+ A S ++K+ A+PR ++ V S + +A VLV ++ HE +L +W +++ W+ +L I+ +L P V AG +FG ++ + + VGAVL +++R+ A V + + W+++LL RL F PG I
Sbjct: 4 DTAQNSKAAKSDAKPRSKMSALFGVAGSLLFVAIVLVLLVHFGVHEEVLHLLQWFKQQGAWAPVLFMLIMAAVVVLLLPGALFTVGAGFVFGVAAGSVYVLLGTTVGAVLAFLIARYCFGQRAREFVMARAKLKLVNDELTPNGWKIVLLTRLIPFFPGKI 164 The following BLAST results are available for this feature:
BLAST of EWM26945.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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