rna3733, rna3733 (mRNA) Nannochloropsis gaditana

Overview
Namerna3733
Unique Namerna3733
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1342
Alignment locationCM002461.1:1090236..1091839 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100929g1.2080.mrna
Orig protein idgnl|cribi|Naga_100929g1.2080
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1090236..1091839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100929g1gene3597Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3733rna3733-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26948.1cds3724Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3733 ID=rna3733|Name=rna3733|organism=Nannochloropsis gaditana|type=mRNA|length=1342bp
CATGGCACTTGCCGACAACACAGGACTTGCGTTCCCTTTCTCAAAAAGCG
GCTAATGTCTGCTTTGTGAGCATCCAGCCGACTGTTGTTCGCGGAAGTCG
ATCATTTTCGGATGGTTCATCCTCACATGCAACAATACCCTGCCGCTTCA
TATACTAGGAGTCACCATGACCCGGCCGGGACAAGCCCGGGCTCCCCGAT
GGATCTCCAGCTATATATTCTACCGCTTCCTGCTGCTCGGTGTGGTGGTG
GTCAAGGCAGCTGACCTCGCCCCTGTCCCTCCATCATCCATTGCCTCGGA
TGCGAAGCCCGCTGCATCTCCCGATCCTAGAGCCTCGGAACCCAACACCC
TCCGACTTGCCCATACCCTCGGCTCGCACATGGTCTTGCAGCAAGCTCCT
CTCCCTGCCTGTCTCTACGGAAGCGGCTCACCCACTGCCTACATTGCTTT
GAGGATGGACCAGGCACTCACGCCCGTCGTCGGCACCGTGGTCGACCTCA
ACGGGGAATGGGCCGCCTGCCTGCCTCCTCAAGGTCCGGGAGGGCCCCAT
ACCATCACCATCACGGGTAGCGGGGGCCGCATTGTGGTGGAGGATGTCCT
ATTTGGGGACGTGTGGTTGTGTTCGGGTCAAAGCAACATGTTGATGACCA
TGTCGCAGACGCTGAACGCGACGGCGGAGATCGCCGCCTCGGGGAGGGAA
GCAAAGGGAGGGGCGCGCCTGCGCATCATGGCGATCGCTCGCAACACCTC
AGGAATCCCCTTGGAGGACTTATCGTCCCCCCCTTTGCTCCCTTGGAGCG
TGGTGACCCCAGACACACTCGGCGGCCCAGACTGGGAATACTTCTCCGCC
ACCTGTTTTTTTTACGGCCTCCACCTGACCAGGCACCCGCGTTTAACCCA
GATTCCCATAGGGCTCATTCAGGCGGCCTATGGATCGACGGAGCTCAAGG
CCTGGTCCCCCCCCGAGGCGCTCGACTCGTGTCGCCCGCTGCCCTCCTCC
CCATCGGGGAGGGCCCCGGCTCCGAAGGTTCGAGAAGGAGGGACCGGAAG
GACGGGCTCGGACCACTCAGGCGTCCCACGCGACGCACGAGGCAATGCCA
CGCGCGATGCGGCCTCGGCATCCGCGGTCGCCTCGCCCGCCTCCCCCATG
ACGACGGCCACATTGCCCCCAGAGGCCCCGGGGCCCGTGCCCGTGGACCC
CCCCCTCCCCAACGTCGACACCAACAGCAGCCACAATGACACGGACCAAG
CCAACGACAGAGAACGGACCCGCACCGCTTCCCTGCCTGTGTCGCCGTCC
ACCCCTTCCCTTCCTCCCGCCCGCCCTCCCTCCCGCCCTCCA
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protein sequence of rna3733

>rna3733-protein ID=rna3733-protein|Name=rna3733|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MAFGFLQLHGYEDPYMDITAQGVEVGSIRLAQYSGLTAPHTFMAAAYDLN
DDASPFGAVHFRNKQEAGARLARAALANGYGKGGSMLGPVARDIVVVVGK
GDGGRRRARPVSMASGHTNLEAGKRGSGSLAAGNVGADGKGASLGVEGED
DLGRAKAQTEAPIAPANATVPFSILISYIGVGSQGLVDSGINLFELATEV
DATDTAGGQVVPSSHLSVLGKNNEQLLVEFELPVDSPFVEEGVLRILRYA
YRNRPCPPTEVENPHVGTWCGLYSFPEGVPALPFVQDV
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mRNA from alignment at CM002461.1:1090236..1091839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3733 ID=rna3733|Name=rna3733|organism=Nannochloropsis gaditana|type=mRNA|length=1604bp|location=Sequence derived from alignment at CM002461.1:1090236..1091839+ (Nannochloropsis gaditana)
gggagagtGTATGCGATTGATCGCACCAtgccatcctctccccctcttcc
aaggcgtcttccctctcttttgcAACCGGCACGCCCCCActcatcctttt
cccctttctcctctgtGTAGGGCGAGCAAGACGTGCACTCCCCGGCGGAC
GACTATCggtgcctcttcccttccttgatcCGCTCCTGGCGGGGGCAGTT
CCTTCCAGCGAACGCCTTGGGCCCCATGGCCTTTGGATTCCTACAGCTTC
ATGTAAGGGTGAAGGatgccagggagggaaagagggagggagggagggag
ggagggaggacggcttggGGTAGGGCGTCGTGTGCCACAGCTTGCCGGTC
ACTTGTGAAAGTAATTGGCTCGCGGGGGCCCAAGGAGGACAATGCCACAC
CGTCGGCATGTGTATGCCGTCTCATTCACATTCACATGTATGGTTgcccc
cccgctctcttGGTCTCGTAGGGTTACGAAGACCCGTACATGGACATCAC
GGCCCAGGGGGTGGAGGTTGGCAGCATCCGCCTGGCCCAATACAGCGGTT
TGACCGCCCCGCATACCTTCATGGCAGCAGCCTACGACCTGAACGACGAC
GCGTCCCCCTTTGGCGCGGTACATTTTCGAAACAAGCAGGAAGCGGGGGC
CCGTCTGGCCCGGGCGGCGCTGGCGAACGGGTACGGAAAGGGGGGTTCCA
TGTTGGGACCCGTGGCCAGAGACATTGTGGTGGTAGTGGGTAAAGGAGAC
GGTGGACGACGGCGCGCACGCCCCGTCTCCATGGCATCCGGGCACACGAA
TCTtgaggcgggaaagcgagggagtgGCTCGCTTGCGGCAGGCAATGTGG
GTgccgacgggaagggagccaGTCTTGGtgttgagggagaggacgaccTA
GGTCGAGCGAAAGCTCAAACCGAGGCGCCGATAGCGCCAGCCAATGCCAC
GGTGCCGTTTTCCATTCTCATATCCTATATTGGGGTAGGGAGTCAGGGCT
TGGTTGACAGTGGGATAAATTTGTTTGAGCTGGCGACGGAAGTTGACGCG
ACAGACACCGCAGGTGGACAGGTTGTTCCCTCCAGTCACCTGAGCGTGCT
GGGGAAGAACAACGAGCAGTTGCTGGTTGAATTTGAGCTGCCTGTAGACT
CTCCTttcgtggaagagggggtgtTGCGTATTTTGAGATATGCCTACCGC
AACCGTCCTTGCCCGCCCACGGAGGTTGAAAATCCTCACGTGGGAACATG
GTGTGGGTTGTACAGCTTCCCGGAAGGGGTTccggcccttccctttgtgC
AAGATGTATGAATATTGAATGATACTGTAGCTGAAGGGTGATGGCCACAC
ATACATCTCGATTGCGTTTTGTATGTTTCATATACTTCAGTAACAATTAA
TTTGTTTCCTTGTCTGTCGCGCTTGCCATGAGGATTTCTTTTCTACGGTG
GCTTTATTACGAATGATTTGAGCCTTTAAACCCGCCAAAAAGAGAAATTT
TTCATTTGCATCGACCATCGGCAGGTCTGAAAATCATGGATGGAGTATAC
ACGTGCAATGAAAGTTTGCAGTGGTCTCCCACAACTCGTACTACTGTGTA
CCGC
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Coding sequence (CDS) from alignment at CM002461.1:1090236..1091839+

>rna3733 ID=rna3733|Name=rna3733|organism=Nannochloropsis gaditana|type=CDS|length=1734bp|location=Sequence derived from alignment at CM002461.1:1090236..1091839+ (Nannochloropsis gaditana)
ATGGCCTTTGGATTCCTACAGCTTCATGGTTACGAAGACCCGTACATGGA
CATCACGGCCCAGGGGGTGGAGGTTGGCAGCATCCGCCTGGCCCAATACA
GCGGTTTGACCGCCCCGCATACCTTCATGGCAGCAGCCTACGACCTGAAC
GACGACGCGTCCCCCTTTGGCGCGGTACATTTTCGAAACAAGCAGGAAGC
GGGGGCCCGTCTGGCCCGGGCGGCGCTGGCGAACGGGTACGGAAAGGGGG
GTTCCATGTTGGGACCCGTGGCCAGAGACATTGTGGTGGTAGTGGGTAAA
GGAGACGGTGGACGACGGCGCGCACGCCCCGTCTCCATGGCATCCGGGCA
CACGAATCTtgaggcgggaaagcgagggagtgGCTCGCTTGCGGCAGGCA
ATGTGGGTgccgacgggaagggagccaGTCTTGGtgttgagggagaggac
gaccTAGGTCGAGCGAAAGCTCAAACCGAGGCGCCGATAGCGCCAGCCAA
TGCCACGGTGCCGTTTTCCATTCTCATATCCTATATTGGGGTAGGGAGTC
AGGGCTTGGTTGACAGTGGGATAAATTTGTTTGAGCTGGCGACGGAAGTT
GACGCGACAGACACCGCAGGTGGACAGGTTGTTCCCTCCAGTCACCTGAG
CGTGCTGGGGAAGAACAACGAGCAGTTGCTGGTTGAATTTGAGCTGCCTG
TAGACTCTCCTttcgtggaagagggggtgtTGCGTATTTTGAGATATGCC
TACCGCAACCGTCCTTGCCCGCCCACGGAGGTTGAAAATCCTCACGTGGG
AACATGGTGTGGGTTGTACAGCTTCCCGGAAGGGGTTccggcccttccct
ttgtgCAAGATGTATGAATGGCCTTTGGATTCCTACAGCTTCATGGTTAC
GAAGACCCGTACATGGACATCACGGCCCAGGGGGTGGAGGTTGGCAGCAT
CCGCCTGGCCCAATACAGCGGTTTGACCGCCCCGCATACCTTCATGGCAG
CAGCCTACGACCTGAACGACGACGCGTCCCCCTTTGGCGCGGTACATTTT
CGAAACAAGCAGGAAGCGGGGGCCCGTCTGGCCCGGGCGGCGCTGGCGAA
CGGGTACGGAAAGGGGGGTTCCATGTTGGGACCCGTGGCCAGAGACATTG
TGGTGGTAGTGGGTAAAGGAGACGGTGGACGACGGCGCGCACGCCCCGTC
TCCATGGCATCCGGGCACACGAATCTtgaggcgggaaagcgagggagtgG
CTCGCTTGCGGCAGGCAATGTGGGTgccgacgggaagggagccaGTCTTG
GtgttgagggagaggacgaccTAGGTCGAGCGAAAGCTCAAACCGAGGCG
CCGATAGCGCCAGCCAATGCCACGGTGCCGTTTTCCATTCTCATATCCTA
TATTGGGGTAGGGAGTCAGGGCTTGGTTGACAGTGGGATAAATTTGTTTG
AGCTGGCGACGGAAGTTGACGCGACAGACACCGCAGGTGGACAGGTTGTT
CCCTCCAGTCACCTGAGCGTGCTGGGGAAGAACAACGAGCAGTTGCTGGT
TGAATTTGAGCTGCCTGTAGACTCTCCTttcgtggaagagggggtgtTGC
GTATTTTGAGATATGCCTACCGCAACCGTCCTTGCCCGCCCACGGAGGTT
GAAAATCCTCACGTGGGAACATGGTGTGGGTTGTACAGCTTCCCGGAAGG
GGTTccggcccttccctttgtgCAAGATGTATGA
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Synonyms
Publications