rna3731, rna3731 (mRNA) Nannochloropsis gaditana

Overview
Namerna3731
Unique Namerna3731
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length543
Alignment locationCM002461.1:1078959..1079564 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100304g1.3097.mrna
Orig protein idgnl|cribi|Naga_100304g1.3097
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1078959..1079564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100304g1gene3595Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26951.1cds3722Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3731rna3731-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3731 ID=rna3731|Name=rna3731|organism=Nannochloropsis gaditana|type=mRNA|length=543bp
ATGGTGTGTAGAGAACCGGGGGGCATAGGGGTGCTCGGAGCGCTCTGCCC
GGAGGCCGGCAACGAGGGGAAGCAGGCTTATTTATTATATTTAAAAGCAA
GATCCCCCGCCACCGCTGCACTGTCCAAGGGCTTCGCGCTCTCGTTTCAG
CGGCGCAATTACTGGACTCTGGGCATTGGGGAGAAACGCATCTCCCTGGC
ACAAGGGCGTCTGGCGTCGCCCACCGACGGGCCGCTCGGAGCCTCTTTCC
CGTGCTCGGGGACCGGGGCGTCAGGAGGCAGAAGCCGAGAAATCAGAATG
AGAGGCAGCGAGTGCATGCTCGGATTGATCAAATGTGACAGCCTAGGAGG
GTACAACAAAGGCAATATACCATATATCGGAGCTACTGTGGTAGTACACA
CCGACGGAATTAGTGCATCGCGTAGCGAAATCGTACCAGAAGCCACAGAA
ACAAAGTACCACCTGTTTCAGAACTTTGGGTACGAAGGGCGAAAGAATGT
GAAAGAAGCTCCGGTGAGAGGGGCAATACATGGCAAATCGTAG
back to top

protein sequence of rna3731

>rna3731-protein ID=rna3731-protein|Name=rna3731|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
PPSLPPSLPPSLAVVHFTVLKDVVLPHATLQIDASPAPSAPSSRLELRVH
ADNTALFVFVEAMGHPGIFSDNAFHLRKDEVKSIIFTPRNGPMSGGREEF
LASLRVRSLWDTVSEGGTEVGAEGGGVAETKHKTVADADVGEANRAMVRG
EESGGNRMQVMRSSAGVEEGLGAEGREGGREGGREGGVRKLRGGAEDSKE
F
back to top

mRNA from alignment at CM002461.1:1078959..1079564-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3731 ID=rna3731|Name=rna3731|organism=Nannochloropsis gaditana|type=mRNA|length=606bp|location=Sequence derived from alignment at CM002461.1:1078959..1079564- (Nannochloropsis gaditana)
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGCAGTCGTGCACTT
CACGGTCCTCAAGGACGTGGTCCTGCCCCACGCCACGCTGCAGATCGACG
CCTCCCCCGCTCCCTCCGCCCCGTCCTCCCGGTTGGAACTGAGGGTGCAC
GCGGACAATACGGCGCTCTTTGTCTTCGTGGAGGCGATGGGGCACCCCGG
GATTTTCTCGGACAATGCCTTCCACCTTCGGAAAGATGAGGTCAAAAGCA
TCATTTTCACCCCTCGGAACGGCCCGATGTCCGGCGGGAGGGAGGAATTC
CTCGCGAGCCTGCGCGTCCGCTCCTTGTGGGACACGGTGTCGGAGGGAGG
GACGGAGGTCGGGGCAGAGGGAGGGGGGGTGGCAGAAACGAAGCACAAAA
CCGTGGCGGATGCGGACGTGGGGGAGGCGAATCGGGCCATGGTCAGGGGG
GAGGAAAGTGGAGGGAACCGAATGCAAGTGATGCGGTCATCGGCGGGGGT
GGAGGAGGGTCTGGGGGCAGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGGTTCGTAAGTTACGGGGAGGGGCTGAAGATTCCAAAGAA
TTTTGA
back to top

Coding sequence (CDS) from alignment at CM002461.1:1078959..1079564-

>rna3731 ID=rna3731|Name=rna3731|organism=Nannochloropsis gaditana|type=CDS|length=606bp|location=Sequence derived from alignment at CM002461.1:1078959..1079564- (Nannochloropsis gaditana)
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGCAGTCGTGCACTT
CACGGTCCTCAAGGACGTGGTCCTGCCCCACGCCACGCTGCAGATCGACG
CCTCCCCCGCTCCCTCCGCCCCGTCCTCCCGGTTGGAACTGAGGGTGCAC
GCGGACAATACGGCGCTCTTTGTCTTCGTGGAGGCGATGGGGCACCCCGG
GATTTTCTCGGACAATGCCTTCCACCTTCGGAAAGATGAGGTCAAAAGCA
TCATTTTCACCCCTCGGAACGGCCCGATGTCCGGCGGGAGGGAGGAATTC
CTCGCGAGCCTGCGCGTCCGCTCCTTGTGGGACACGGTGTCGGAGGGAGG
GACGGAGGTCGGGGCAGAGGGAGGGGGGGTGGCAGAAACGAAGCACAAAA
CCGTGGCGGATGCGGACGTGGGGGAGGCGAATCGGGCCATGGTCAGGGGG
GAGGAAAGTGGAGGGAACCGAATGCAAGTGATGCGGTCATCGGCGGGGGT
GGAGGAGGGTCTGGGGGCAGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGGTTCGTAAGTTACGGGGAGGGGCTGAAGATTCCAAAGAA
TTTTGA
back to top
Synonyms
Publications