rna373, rna373 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna373
Unique Name	rna373
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1377
Alignment location	CM002455.1:910768..912791 -

Link to JBrowse

Properties


Property Name	Value
Product	rna-binding protein 25
Orig transcript id	gnl\|cribi\|Naga_100003g117.1769.mrna
Orig protein id	gnl\|cribi\|Naga_100003g117.1769
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:910768..912791 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g117	gene360	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30252.1	cds373	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna373	rna373-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:910768..912791-
coding sequence from alignment at CM002455.1:910768..912791-

mRNA sequence

>rna373 ID=rna373|Name=rna373|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp
ATGCTTTTGAGAGGAAAGCAGGCATACCTGAAGCCGCTTTTTGTCGGCTG
CTTCTTACTACCTCGCCTCGCTTCCACGCCGCTGGCATTTTTGAGGTCCA
TGTCACCAGCCAGCAAGCATCTCAGAAATGAGTCCCGCATTCTGTCTCCG
CCCACAACGCATAGATATGATGGTACGGATAAGTATTCAAGAGCATGCAA
TCAAGCGTGCCACGAAGAGGGACCTCGCCTGTCAGAAGCATCTACAAGAC
AAGTGGTCCTTTCCACCTTTCCTGCACGACCCTTCGAGCCTTTGCCTTGG
GTCACAAATGAGCACTGGCAAACAATATGGGGCGCCAGAGTTATTCAAGA
TACGATGCTTAAGAAATTTGCTTCTGAGTCCCTGCCGAAGGGATGGCAGG
ACGTGTACGACAGGCGGGAGCGGTGGGATACGCCCGACGGAGATTTCTTT
CATGTGGACTTTCTTTTTAGTCACGTGCCTCCTTCGGGCCCTCCCTCACA
ACCTCGACCTATGGCTATTGTACTACACGGACTAGAATCTACTTCCTGGG
CAATCCTACCCAGATCAATGGCAAAAGCCTTTGCGCGACGGGGCTTTGAT
GTCCTAGCTCTCAATTTCCGTGGTTGCTGCGGCACGGAGAATCTTAAAGC
TTACTCATATCACTTGGGTTTTACAGATGACCTGAAATTTGCCATTCAGC
GCTTGTTTGCTGAGGAGCCGCGACGCCGCATATACCTCACCGGCTTCTCT
CTGGGAGGGAATGTGATCCTTAAGTGCCTGGGAGAGCTCGGGGAAGAAGC
AGCAAGCATGGGTGTACAGGGGGCTGCCGTCGCATGTGTGCCCTTTGATG
CCGTGCGATCTTCCAGCAAAATCGACACCGGCTTCAATCGTTGGGTGTAC
GCGGCCAACTTTCTGTCAACATTGAAGGTGAAAGCAGCAAAAAAATATGA
GACACATCAACGGCACCGGGAAGGGAAAGGAGTGGACAAGGAGCTGTATG
ACCTGGATCGGGTTTTGGCCTGCTCCACCATAGGCGATTTTGACGACGAG
GTTGTTGCGAAGTTGCACAATTTTGAGGATAAAATAGATTATTATCGACA
GAGCTGTTCAAAGCAGTACCTTCCATTAGTACGGATTCCCGCATTGGTCA
TTAACGCCCGGGATGATCCATTCATCAATGAAGCGGGATTACCTACCCCG
GAAGACGTCGGAGATGGGACGGTTCGCTTGATTTACCACAGCTATGGAGG
ACATTGCGGTTTTCTCACAGGACAGGAAAAAACGAGCCATGAGGACGAGC
GGTGGCTACCCACGGAGCTCGCACGATTTTTAGAACATGTAGATCGACCA
TTCCGCGAAGCGAAATGTGAAAGTTGA

protein sequence of rna373

>rna373-protein ID=rna373-protein|Name=rna373|organism=Nannochloropsis gaditana|type=polypeptide|length=569bp
MTRDPPRGAPPPFSLPKNIVSSQTHLSRETTATISPPADKAASALMRASE
ASLSDHAADSLRHNCDIIAENGRVHATECSSTAPVLVSSHSGEDDPMTVF
VGRLPPTVPDHVIYTLLEQCGKILEWKRAVGKSFGFCQYAQPSYARRCLE
LMNGVKLDCQPVLVKLDNKELARLVELAVSEQDAAQDKITKERLTSIIEQ
QHLRVHVGEGEVRASAKRQRCKHGAEEEGGCGSGCGSRAELLTGGWDPSS
SLSGMQKNTAHDLLVLGELDRFRTTEAERGRLQEKHRLLELRHRVEEQER
LEIRQKKRRNETAEFILREAKMKVPHSAAEETREISKSKARDGCEEASGC
CCLNDEKIGSNDVTGAKLLTYHSHGSQCLQKRDCQRTVDFPGILREVDTC
VMLDVGESNMRTSYDTKPPAADELGPLKKNTEQKQARNDQRWSKDASSNA
SRHCGANIRKFKPLCERQMRLVSKIPQDRKALLMYPVDWVAVDKNSLVSS
KLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEA
DVFIEKLWRILIYYTIECQ

mRNA from alignment at CM002455.1:910768..912791-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna373 ID=rna373|Name=rna373|organism=Nannochloropsis gaditana|type=mRNA|length=2024bp|location=Sequence derived from alignment at CM002455.1:910768..912791- (Nannochloropsis gaditana)
CATCTGGTCTTGTCGTAAATAGGTTCTCCTGAGCTAGGACGTGGCCCCAC
CACCGTGATGGCTCTTGTGCGGCTTTCTCCTAGCCTGTTATGCAATGCAT
GCTGCGCCTTCCTCCGCTAGGTCTGAGGAAGCAAAGTCAGTGGATGGGAA
ATTACCATGCTTGGCATTGATGGCGCCCAGTATCCTTGCTACTTACGTAC
AACTAAGTGTGTTTGATTTAACGCCTCAAATTCCTTTTTTACAGGGTCAG
TAGCTCGCTCCGACGCCGGGACCGCCGCTCAACATGACCCGTGATCCACC
ACGCGGTGCCCCACCGCCCTTCTCTCTGCCCAAAAATATCGTATCTTCGC
AGACTCATCTTTCTCGTGAAACAACCGCAACTATCTCCCCACCAGCTGAT
AAAGCTGCGTCTGCTCTCATGAGAGCTAGCGAAGCATCCCTTTCTGATCA
TGCAGCCGATAGCCTGAGGCACAACTGTGACATCATAGCTGAAAACGGAC
GAGTCCACGCGACAGAGTGTTCAAGTACAGCACCAGTACTAGTATCCTCA
CATAGTGGAGAGGATGACCCAATGACAGTCTTTGTGGGAAGACTACCTCC
AACGGTCCCGGACCATGTAATCTACACCCTGCTGGAGCAGTGCGGGAAAA
TACTTGAATGGAAGCGAGCTGTGGGTAAAAGTTTCGGCTTCTGCCAATAT
GCGCAGCCGAGCTACGCCAGGCGATGTCTTGAACTGATGAATGGGGTCAA
ATTGGACTGCCAACCGGTTCTCGTCAAATTAGACAACAAGGAGCTTGCGC
GCTTGGTCGAGTTAGCTGTCAGCGAACAGGATGCAGCCCAGGATAAAATC
ACAAAAGAACGATTAACAAGTATCATAGAACAACAACACCTGCGCGTTCA
TGTTGGGGAAGGGGAGGTTCGAGCATCTGCGAAGCGGCAACGGTGTAAAC
ATGGGGCAGAGGAAGAAGGAGGCTGTGGCAGCGGGTGTGGGTCGAGGGCA
GAGCTCTTGACCGGGGGATGGGACCCTTCATCGTCCCTCAGCGGTATGCA
AAAAAATACTGCACATGACTTGCTCGTTTTAGGCGAGCTGGATCGTTTTC
GAACAACCGAGGCAGAGCGTGGTCGTCTGCAGGAGAAACATCGATTACTG
GAGCTTCGGCATCGTGTGGAGGAGCAAGAGCGCTTGGAAATTCGACAAAA
AAAGCGCAGAAATGAGACAGCAGAATTTATTCTAAGAGAGGCAAAGATGA
AGGTCCCGCATAGTGCAGCAGAAGAGACGCGCGAAATTAGCAAAAGTAAA
GCAAGGGACGGTTGCGAAGAAGCGTCCGGGTGCTGCTGCTTAAATGACGA
AAAGATTGGCAGCAATGATGTGACGGGCGCCAAACTGCTTACATATCATT
CTCATGGGTCGCAGTGCCTTCAAAAAAGAGACTGCCAAAGAACGGTTGAT
TTTCCAGGAATATTACGGGAAGTCGATACTTGCGTAATGCTCGATGTCGG
TGAAAGCAATATGAGGACATCATATGACACAAAGCCCCCGGCGGCTGACG
AATTAGGGCCTCTGAAGAAGAATACAGAGCAAAAGCAGGCAAGGAATGAT
CAGAGATGGTCTAAAGACGCTTCTTCGAACGCATCGAGGCATTGTGGCGC
AAACATACGCAAATTCAAGCCATTATGTGAGCGTCAGATGCGACTTGTGA
GCAAAATACCGCAGGATAGAAAAGCCCTTTTAATGTACCCGGTCGATTGG
GTCGCTGTAGATAAAAACAGTCTCGTGTCAAGTAAATTGCGAGCCTGGGT
CGCATCGAAGGTAATAGAACTTCTCGGGGAAGAGGAGAATACTCTAATAG
AGTTTATATGTTCAAAACTTACAAGCCATTGTCATCCCAACAAACTACTT
GCCGAGCTACGCTTGGTTTTTGATGATGAAGCGGATGTTTTCATTGAGAA
GCTCTGGAGAATATTGATATATTACACGATCGAGTGCCAATAAAAATAGA
TAAAATACCTACAATGACGAGATG

Coding sequence (CDS) from alignment at CM002455.1:910768..912791-

>rna373 ID=rna373|Name=rna373|organism=Nannochloropsis gaditana|type=CDS|length=1710bp|location=Sequence derived from alignment at CM002455.1:910768..912791- (Nannochloropsis gaditana)
ATGACCCGTGATCCACCACGCGGTGCCCCACCGCCCTTCTCTCTGCCCAA
AAATATCGTATCTTCGCAGACTCATCTTTCTCGTGAAACAACCGCAACTA
TCTCCCCACCAGCTGATAAAGCTGCGTCTGCTCTCATGAGAGCTAGCGAA
GCATCCCTTTCTGATCATGCAGCCGATAGCCTGAGGCACAACTGTGACAT
CATAGCTGAAAACGGACGAGTCCACGCGACAGAGTGTTCAAGTACAGCAC
CAGTACTAGTATCCTCACATAGTGGAGAGGATGACCCAATGACAGTCTTT
GTGGGAAGACTACCTCCAACGGTCCCGGACCATGTAATCTACACCCTGCT
GGAGCAGTGCGGGAAAATACTTGAATGGAAGCGAGCTGTGGGTAAAAGTT
TCGGCTTCTGCCAATATGCGCAGCCGAGCTACGCCAGGCGATGTCTTGAA
CTGATGAATGGGGTCAAATTGGACTGCCAACCGGTTCTCGTCAAATTAGA
CAACAAGGAGCTTGCGCGCTTGGTCGAGTTAGCTGTCAGCGAACAGGATG
CAGCCCAGGATAAAATCACAAAAGAACGATTAACAAGTATCATAGAACAA
CAACACCTGCGCGTTCATGTTGGGGAAGGGGAGGTTCGAGCATCTGCGAA
GCGGCAACGGTGTAAACATGGGGCAGAGGAAGAAGGAGGCTGTGGCAGCG
GGTGTGGGTCGAGGGCAGAGCTCTTGACCGGGGGATGGGACCCTTCATCG
TCCCTCAGCGGTATGCAAAAAAATACTGCACATGACTTGCTCGTTTTAGG
CGAGCTGGATCGTTTTCGAACAACCGAGGCAGAGCGTGGTCGTCTGCAGG
AGAAACATCGATTACTGGAGCTTCGGCATCGTGTGGAGGAGCAAGAGCGC
TTGGAAATTCGACAAAAAAAGCGCAGAAATGAGACAGCAGAATTTATTCT
AAGAGAGGCAAAGATGAAGGTCCCGCATAGTGCAGCAGAAGAGACGCGCG
AAATTAGCAAAAGTAAAGCAAGGGACGGTTGCGAAGAAGCGTCCGGGTGC
TGCTGCTTAAATGACGAAAAGATTGGCAGCAATGATGTGACGGGCGCCAA
ACTGCTTACATATCATTCTCATGGGTCGCAGTGCCTTCAAAAAAGAGACT
GCCAAAGAACGGTTGATTTTCCAGGAATATTACGGGAAGTCGATACTTGC
GTAATGCTCGATGTCGGTGAAAGCAATATGAGGACATCATATGACACAAA
GCCCCCGGCGGCTGACGAATTAGGGCCTCTGAAGAAGAATACAGAGCAAA
AGCAGGCAAGGAATGATCAGAGATGGTCTAAAGACGCTTCTTCGAACGCA
TCGAGGCATTGTGGCGCAAACATACGCAAATTCAAGCCATTATGTGAGCG
TCAGATGCGACTTGTGAGCAAAATACCGCAGGATAGAAAAGCCCTTTTAA
TGTACCCGGTCGATTGGGTCGCTGTAGATAAAAACAGTCTCGTGTCAAGT
AAATTGCGAGCCTGGGTCGCATCGAAGGTAATAGAACTTCTCGGGGAAGA
GGAGAATACTCTAATAGAGTTTATATGTTCAAAACTTACAAGCCATTGTC
ATCCCAACAAACTACTTGCCGAGCTACGCTTGGTTTTTGATGATGAAGCG
GATGTTTTCATTGAGAAGCTCTGGAGAATATTGATATATTACACGATCGA
GTGCCAATAA

Synonyms

Publications