EWM30252.1, cds373 (CDS) Nannochloropsis gaditana

Overview
NameEWM30252.1
Unique Namecds373
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:910799..912508 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30252.1
Productrna-binding protein 25
Orig transcript idgnl|cribi|Naga_100003g117.1769.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:910799..912508 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0008219cell death
GO:0006397mRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
IPR002483PWI_dom
Homology
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|585112911|gb|EWM30252.1| (rna-binding protein 25 [Nannochloropsis gaditana])

HSP 1 Score: 1177.54 bits (3045), Expect = 0.000e+0
Identity = 569/569 (100.00%), Postives = 569/569 (100.00%), Query Frame = 0 
Query:    1 MTRDPPRGAPPPFSLPKNIVSSQTHLSRETTATISPPADKAASALMRASEASLSDHAADSLRHNCDIIAENGRVHATECSSTAPVLVSSHSGEDDPMTVFVGRLPPTVPDHVIYTLLEQCGKILEWKRAVGKSFGFCQYAQPSYARRCLELMNGVKLDCQPVLVKLDNKELARLVELAVSEQDAAQDKITKERLTSIIEQQHLRVHVGEGEVRASAKRQRCKHGAEEEGGCGSGCGSRAELLTGGWDPSSSLSGMQKNTAHDLLVLGELDRFRTTEAERGRLQEKHRLLELRHRVEEQERLEIRQKKRRNETAEFILREAKMKVPHSAAEETREISKSKARDGCEEASGCCCLNDEKIGSNDVTGAKLLTYHSHGSQCLQKRDCQRTVDFPGILREVDTCVMLDVGESNMRTSYDTKPPAADELGPLKKNTEQKQARNDQRWSKDASSNASRHCGANIRKFKPLCERQMRLVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYTIECQ 569
            MTRDPPRGAPPPFSLPKNIVSSQTHLSRETTATISPPADKAASALMRASEASLSDHAADSLRHNCDIIAENGRVHATECSSTAPVLVSSHSGEDDPMTVFVGRLPPTVPDHVIYTLLEQCGKILEWKRAVGKSFGFCQYAQPSYARRCLELMNGVKLDCQPVLVKLDNKELARLVELAVSEQDAAQDKITKERLTSIIEQQHLRVHVGEGEVRASAKRQRCKHGAEEEGGCGSGCGSRAELLTGGWDPSSSLSGMQKNTAHDLLVLGELDRFRTTEAERGRLQEKHRLLELRHRVEEQERLEIRQKKRRNETAEFILREAKMKVPHSAAEETREISKSKARDGCEEASGCCCLNDEKIGSNDVTGAKLLTYHSHGSQCLQKRDCQRTVDFPGILREVDTCVMLDVGESNMRTSYDTKPPAADELGPLKKNTEQKQARNDQRWSKDASSNASRHCGANIRKFKPLCERQMRLVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYTIECQ
Sbjct:    1 MTRDPPRGAPPPFSLPKNIVSSQTHLSRETTATISPPADKAASALMRASEASLSDHAADSLRHNCDIIAENGRVHATECSSTAPVLVSSHSGEDDPMTVFVGRLPPTVPDHVIYTLLEQCGKILEWKRAVGKSFGFCQYAQPSYARRCLELMNGVKLDCQPVLVKLDNKELARLVELAVSEQDAAQDKITKERLTSIIEQQHLRVHVGEGEVRASAKRQRCKHGAEEEGGCGSGCGSRAELLTGGWDPSSSLSGMQKNTAHDLLVLGELDRFRTTEAERGRLQEKHRLLELRHRVEEQERLEIRQKKRRNETAEFILREAKMKVPHSAAEETREISKSKARDGCEEASGCCCLNDEKIGSNDVTGAKLLTYHSHGSQCLQKRDCQRTVDFPGILREVDTCVMLDVGESNMRTSYDTKPPAADELGPLKKNTEQKQARNDQRWSKDASSNASRHCGANIRKFKPLCERQMRLVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYTIECQ 569
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|553178113|ref|XP_005852522.1| (RNA-binding protein 25 [Nannochloropsis gaditana CCMP526] >gi|422296011|gb|EKU23310.1| RNA-binding protein 25 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1174.84 bits (3038), Expect = 0.000e+0
Identity = 567/569 (99.65%), Postives = 569/569 (100.00%), Query Frame = 0 
Query:    1 MTRDPPRGAPPPFSLPKNIVSSQTHLSRETTATISPPADKAASALMRASEASLSDHAADSLRHNCDIIAENGRVHATECSSTAPVLVSSHSGEDDPMTVFVGRLPPTVPDHVIYTLLEQCGKILEWKRAVGKSFGFCQYAQPSYARRCLELMNGVKLDCQPVLVKLDNKELARLVELAVSEQDAAQDKITKERLTSIIEQQHLRVHVGEGEVRASAKRQRCKHGAEEEGGCGSGCGSRAELLTGGWDPSSSLSGMQKNTAHDLLVLGELDRFRTTEAERGRLQEKHRLLELRHRVEEQERLEIRQKKRRNETAEFILREAKMKVPHSAAEETREISKSKARDGCEEASGCCCLNDEKIGSNDVTGAKLLTYHSHGSQCLQKRDCQRTVDFPGILREVDTCVMLDVGESNMRTSYDTKPPAADELGPLKKNTEQKQARNDQRWSKDASSNASRHCGANIRKFKPLCERQMRLVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYTIECQ 569
            MTRDPPRGAPPPFSLPKNIVSSQTHLSRET+ATISPPADKAASALMRASEASLSDHAADSLRHNCDIIAENGRVHATECSSTAPVLVSSHSGEDDPMTVFVGRLPPTVPDHVIYTLLEQCGKILEWKRA+GKSFGFCQYAQPSYARRCLELMNGVKLDCQPVLVKLDNKELARLVELAVSEQDAAQDKITKERLTSIIEQQHLRVHVGEGEVRASAKRQRCKHGAEEEGGCGSGCGSRAELLTGGWDPSSSLSGMQKNTAHDLLVLGELDRFRTTEAERGRLQEKHRLLELRHRVEEQERLEIRQKKRRNETAEFILREAKMKVPHSAAEETREISKSKARDGCEEASGCCCLNDEKIGSNDVTGAKLLTYHSHGSQCLQKRDCQRTVDFPGILREVDTCVMLDVGESNMRTSYDTKPPAADELGPLKKNTEQKQARNDQRWSKDASSNASRHCGANIRKFKPLCERQMRLVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYTIECQ
Sbjct:    1 MTRDPPRGAPPPFSLPKNIVSSQTHLSRETSATISPPADKAASALMRASEASLSDHAADSLRHNCDIIAENGRVHATECSSTAPVLVSSHSGEDDPMTVFVGRLPPTVPDHVIYTLLEQCGKILEWKRAMGKSFGFCQYAQPSYARRCLELMNGVKLDCQPVLVKLDNKELARLVELAVSEQDAAQDKITKERLTSIIEQQHLRVHVGEGEVRASAKRQRCKHGAEEEGGCGSGCGSRAELLTGGWDPSSSLSGMQKNTAHDLLVLGELDRFRTTEAERGRLQEKHRLLELRHRVEEQERLEIRQKKRRNETAEFILREAKMKVPHSAAEETREISKSKARDGCEEASGCCCLNDEKIGSNDVTGAKLLTYHSHGSQCLQKRDCQRTVDFPGILREVDTCVMLDVGESNMRTSYDTKPPAADELGPLKKNTEQKQARNDQRWSKDASSNASRHCGANIRKFKPLCERQMRLVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYTIECQ 569
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|929333220|ref|XP_014041770.1| (PREDICTED: RNA-binding protein 25-like, partial [Salmo salar])

HSP 1 Score: 109.383 bits (272), Expect = 4.255e-24
Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 0 
Query:  471 LVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYT 565
            L+ KIP  R  L  YP+DW AVD ++L+  ++R W+  K+IE +GEEE TL++F+CSK+ SH  P  +L ++ +V D+EA+VFI K+WR+LIY T
Sbjct:   80 LIEKIPTARPDLFNYPLDWTAVD-STLMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMSHGTPQGILDDVAMVLDEEAEVFIVKMWRLLIYET 173
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|642015726|emb|CDQ96004.1| (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 105.916 bits (263), Expect = 1.005e-22
Identity = 45/95 (47.37%), Postives = 69/95 (72.63%), Query Frame = 0 
Query:  471 LVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYT 565
            L+ KIP  +  L  YP+DW AVD ++L+  ++R W+  K+IE +GEEE TL++F+CSK+ +H  P  +L ++ +V D+EA+VFI K+WR+LIY T
Sbjct:   93 LIEKIPTGKTELFSYPLDWSAVD-STLMDRRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHGTPQGILDDVAMVLDEEAEVFIVKMWRLLIYET 186
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|929050900|ref|XP_014045950.1| (PREDICTED: RNA-binding protein 25 isoform X2 [Salmo salar])

HSP 1 Score: 113.62 bits (283), Expect = 1.388e-22
Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 0 
Query:  471 LVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYT 565
            L+ KIP  R  L  YP+DW AVD ++L+  ++R W+  K+IE +GEEE TL++F+CSK+ SH  P  +L ++ +V D+EA+VFI K+WR+LIY T
Sbjct:  794 LIEKIPTARPELFNYPLDWTAVD-STLMDRRIRPWINKKIIEYIGEEEATLVDFVCSKVMSHGTPQGILDDVAMVLDEEAEVFIVKMWRLLIYET 887
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|929050898|ref|XP_014045842.1| (PREDICTED: RNA-binding protein 25 isoform X1 [Salmo salar])

HSP 1 Score: 113.62 bits (283), Expect = 1.409e-22
Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 0 
Query:  471 LVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYT 565
            L+ KIP  R  L  YP+DW AVD ++L+  ++R W+  K+IE +GEEE TL++F+CSK+ SH  P  +L ++ +V D+EA+VFI K+WR+LIY T
Sbjct:  800 LIEKIPTARPELFNYPLDWTAVD-STLMDRRIRPWINKKIIEYIGEEEATLVDFVCSKVMSHGTPQGILDDVAMVLDEEAEVFIVKMWRLLIYET 893
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|429544236|pdb|3V53|A (Chain A, Crystal Structure Of Human Rbm25 >gi|429544237|pdb|3V53|B Chain B, Crystal Structure Of Human Rbm25 >gi|429544238|pdb|3V53|C Chain C, Crystal Structure Of Human Rbm25 >gi|429544239|pdb|3V53|D Chain D, Crystal Structure Of Human Rbm25 >gi|429544240|pdb|3V53|E Chain E, Crystal Structure Of Human Rbm25)

HSP 1 Score: 103.219 bits (256), Expect = 1.466e-22
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = 0 
Query:  471 LVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYT 565
            L+ KIP  +  L  YP+DW  VD + L+  ++R W+  K+IE +GEEE TL++F+CSK+ +H  P  +L ++ +V D+EA+VFI K+WR+LIY T
Sbjct:   17 LIEKIPTAKPELFAYPLDWSIVD-SILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYET 110
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|1041542092|ref|XP_017300463.1| (PREDICTED: RNA-binding protein 25-like [Diaphorina citri])

HSP 1 Score: 106.686 bits (265), Expect = 1.590e-22
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = 0 
Query:  471 LVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYT 565
             + KIP D+K L  Y +DW AVD N L+  K+R W+  K+IE +GE E TL++FICSK+ +   P  +L ++++V D+EA++F+ K+WR+LIY T
Sbjct:  136 FIEKIPTDKKVLFNYQIDWAAVD-NQLMERKIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSAPQGVLDDVQMVLDEEAEIFVVKMWRLLIYET 229
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|884966436|ref|XP_012993014.1| (PREDICTED: RNA-binding protein 25 isoform X1 [Esox lucius])

HSP 1 Score: 112.849 bits (281), Expect = 1.944e-22
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 0 
Query:  471 LVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYT 565
            L+ KIP  R  L  YP+DW AVD  SL+  ++R W+  K+IE +GEEE TL++F+CSK+ +H  P  +L ++ +V D+EA+VFI K+WR+LIY T
Sbjct:  792 LIEKIPTGRPELFNYPLDWTAVD-TSLMDRRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHGTPQGILDDVAMVLDEEAEVFIVKMWRLLIYET 885
[Close]
BLAST of EWM30252.1 vs. NCBI_GenBank
Match: gi|884966438|ref|XP_012993015.1| (PREDICTED: RNA-binding protein 25 isoform X2 [Esox lucius])

HSP 1 Score: 112.849 bits (281), Expect = 2.096e-22
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 0 
Query:  471 LVSKIPQDRKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYT 565
            L+ KIP  R  L  YP+DW AVD  SL+  ++R W+  K+IE +GEEE TL++F+CSK+ +H  P  +L ++ +V D+EA+VFI K+WR+LIY T
Sbjct:  787 LIEKIPTGRPELFNYPLDWTAVD-TSLMDRRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHGTPQGILDDVAMVLDEEAEVFIVKMWRLLIYET 880
The following BLAST results are available for this feature:
BLAST of EWM30252.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112911|gb|EWM30252.1|0.000e+0100.00rna-binding protein 25 [Nannochloropsis gaditana][more]
gi|553178113|ref|XP_005852522.1|0.000e+099.65RNA-binding protein 25 [Nannochloropsis gaditana C... [more]
gi|929333220|ref|XP_014041770.1|4.255e-2449.47PREDICTED: RNA-binding protein 25-like, partial [S... [more]
gi|642015726|emb|CDQ96004.1|1.005e-2247.37unnamed protein product [Oncorhynchus mykiss][more]
gi|929050900|ref|XP_014045950.1|1.388e-2249.47PREDICTED: RNA-binding protein 25 isoform X2 [Salm... [more]
gi|929050898|ref|XP_014045842.1|1.409e-2249.47PREDICTED: RNA-binding protein 25 isoform X1 [Salm... [more]
gi|429544236|pdb|3V53|A1.466e-2246.32Chain A, Crystal Structure Of Human Rbm25 >gi|4295... [more]
gi|1041542092|ref|XP_017300463.1|1.590e-2246.32PREDICTED: RNA-binding protein 25-like [Diaphorina... [more]
gi|884966436|ref|XP_012993014.1|1.944e-2249.47PREDICTED: RNA-binding protein 25 isoform X1 [Esox... [more]
gi|884966438|ref|XP_012993015.1|2.096e-2249.47PREDICTED: RNA-binding protein 25 isoform X2 [Esox... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna373rna373Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications