rna3728, rna3728 (mRNA) Nannochloropsis gaditana

Overview
Namerna3728
Unique Namerna3728
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1155
Alignment locationCM002461.1:1074336..1075194 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100304g4.3099.mrna
Orig protein idgnl|cribi|Naga_100304g4.3099
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1074336..1075194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100304g4gene3592Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3728rna3728-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26953.1cds3719Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3728 ID=rna3728|Name=rna3728|organism=Nannochloropsis gaditana|type=mRNA|length=1155bp
ATGGCTCGTCGGCAGGCAGCGGGGGCTTTTTGGTGCTTGGCATGGATGGG
AGCGGCGCACGGAGCAGACGTCATGACCTGCTCGAATTCGCACTTCCGCG
CGCTTGTAGTTCCTCAAAGTAACGGCCACAGCACCTTGCTGCATACACCC
ACGTCACCACAAGGCAATTCGGGGCTTGTCCCCGAGATCTCTGCCGAGGA
ATTGCAGGAAGTTCATCAACGCGTCATGGGAAGGCATGCCCGTGCTTACC
GGGAGGTGTTGCCCAGCCTGGATGTCTTCGCCCCACATCCCCCCTCAGGA
GTCTTCGTCGCTTTATTGGACGGTGTCAGCGCCACGACACCGTATATTGA
GCGGTTGCAGGCGGTGGAAGGCATTTACGAGGCCCGCGTCGCCGGTTTCA
AAGACCTGCACGCCGTGGCCACCAGCTACGGGAACAGCTCCCGTCCCTAT
CCCCCTTCCTCCTTAGTGGCCTGCCTGGCCTGTGATCCCGCCACACGCGC
CTTGCCCGTCTGCCAACAAGCCGCGAAAAACAGGGTCTCCGAGGACCCTC
TCCTGCACAAGATTGACCTGGCCTTCATCGCGAAGGAGTTGCCGGGCCTG
GTGTCCCCGACTGATTTGGGGAAAACGTTTGAGATGGGCGGAGTGGCCGA
CCGTCGCTTCCTCGCCGAAGTCCAGAGCTTGCTCCGCCTGCCGTTCCTCC
TGCCGGGGAAGCCCGGGGCCCAAGGGAACGGTCCCGACGTCATTCTTTAC
GCAGCTGATGGCCTCCGAGGCTTGGAAGTCGCGTACGGCGTCTCCTCGCC
CCAAGTCTCCTTGGCGGGGAGGATGATGGATAAGGCCCTCGACCAGACCA
GCCGGGCGCTGGAACGGCGGTATGCCGCCGAGGGGGGCCTGATTTCCCAG
GTCTTGCTGCGGCAGACGGGTGCGCTCGTCGAGGTGGCCCGTCCGAGAAG
ACGGCTGCAGCCCACGGGCGAAGACGCCACGCCGGTGACAGAGGAAGACA
TTTTCAATGTCAATATCATAACCTGGACCACGGTGGGGCTGATTCTTGCC
TTGTTAATGTCTCTCTGCCTGCTTGCGGGGGCGGGCTCCGGTCCGAAAGA
CTCGCTGTTGTATGCCAAGTTTGCGGCCGATACATCGGGAGGGAAGACTG
ATTGA
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protein sequence of rna3728

>rna3728-protein ID=rna3728-protein|Name=rna3728|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MMDPSMMQAQMAASTSNPESNDLSSRSQLFSPAVAHNAQIVEHVRGLMSI
FAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKW
YAFLVADAANHLLSFLLFWTMGYTLIHIY
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mRNA from alignment at CM002461.1:1074336..1075194+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3728 ID=rna3728|Name=rna3728|organism=Nannochloropsis gaditana|type=mRNA|length=859bp|location=Sequence derived from alignment at CM002461.1:1074336..1075194+ (Nannochloropsis gaditana)
aagaagagtGCAGGTCCACAGTTGCAAACATAACTTCTCACGTCTTTCAT
CCACACCGTCAGGAACTGAGGGAACTTCGTGCCTCGTGAAAAAAATCATC
ATGATGGATCCGAGCATGATGCAGGCGCAGATGGCAGCTTCCACATCCAA
TCCTGAGTCAAACGACCTCAGTTCCCGCTCCCAATTGTTCTCGCCAGCCG
TGGCACACAATGCTCAGATTGTCGAACACGTGCGAGGACTAATGTCGATC
TTTGCCGGGGCCGCGGCTGGAGTGCTAGGGGTGACCGGGATAATACAGGT
AAGGAGGAAATACAGCACAGAAGATTAATGGCAACCTGTGTTGATaattt
ctttctccgcctgtCTATGCCTATCACAGGGAGCCTGTGTCTTTATCATT
TTCCACACTTTGACCTCCCTGGGCTTACTGACGAAGATAAAATTGACGGG
GAAGGTGTCAAATTACCTTCCCACCAAATGGTACGCGTTCTTGGTGGCAG
ACGCGGCGAATCATTTGTTGTCATTCCTCTTGTTTTGGACCATGGGATAC
ACGCTCATCCATATATACTGAGGAAGCAATCGAAGCTTTATaaaaaggaa
tggaaaaggGATAACATCGGCGATTGCCCGTTCAAATGAAACACGGTGCT
GCTTTGATTTGTCGCCTTTCATTTACTGTCGCGTTGCAACGTCTTGCACG
TGTTCGCAGTCACTGAATGTCAGGTGTGAAAATTCAGGTCATACCACGAA
CATGTGCATGGCTCGTCTCCAAATGCGAGCCGCTCAATATCGATGTCAAA
CGACGAGCTCTGCAacgcttttccccccagAGAAACGTACaaccttcttt
cccttcagc
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Coding sequence (CDS) from alignment at CM002461.1:1074336..1075194+

>rna3728 ID=rna3728|Name=rna3728|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002461.1:1074336..1075194+ (Nannochloropsis gaditana)
ATGATGGATCCGAGCATGATGCAGGCGCAGATGGCAGCTTCCACATCCAA
TCCTGAGTCAAACGACCTCAGTTCCCGCTCCCAATTGTTCTCGCCAGCCG
TGGCACACAATGCTCAGATTGTCGAACACGTGCGAGGACTAATGTCGATC
TTTGCCGGGGCCGCGGCTGGAGTGCTAGGGGTGACCGGGATAATACAGGG
AGCCTGTGTCTTTATCATTTTCCACACTTTGACCTCCCTGGGCTTACTGA
CGAAGATAAAATTGACGGGGAAGGTGTCAAATTACCTTCCCACCAAATGG
TACGCGTTCTTGGTGGCAGACGCGGCGAATCATTTGTTGTCATTCCTCTT
GTTTTGGACCATGGGATACACGCTCATCCATATATACTGAATGATGGATC
CGAGCATGATGCAGGCGCAGATGGCAGCTTCCACATCCAATCCTGAGTCA
AACGACCTCAGTTCCCGCTCCCAATTGTTCTCGCCAGCCGTGGCACACAA
TGCTCAGATTGTCGAACACGTGCGAGGACTAATGTCGATCTTTGCCGGGG
CCGCGGCTGGAGTGCTAGGGGTGACCGGGATAATACAGGGAGCCTGTGTC
TTTATCATTTTCCACACTTTGACCTCCCTGGGCTTACTGACGAAGATAAA
ATTGACGGGGAAGGTGTCAAATTACCTTCCCACCAAATGGTACGCGTTCT
TGGTGGCAGACGCGGCGAATCATTTGTTGTCATTCCTCTTGTTTTGGACC
ATGGGATACACGCTCATCCATATATACTGA
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Synonyms
Publications