EWM26953.1, cds3719 (CDS) Nannochloropsis gaditana

Overview
NameEWM26953.1
Unique Namecds3719
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1074436..1074633 +
Alignment locationCM002461.1:1074715..1074906 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26953.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100304g4.3099.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1074436..1074633 +
CM002461.1supercontigCM002461.1:1074715..1074906 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0072546ER membrane protein complex
GO:0005783endoplasmic reticulum
Vocabulary: INTERPRO
TermDefinition
IPR008504Emc6
IPR029008Rab5IP_fam
Homology
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|585109107|gb|EWM26953.1| (hypothetical protein Naga_100304g4 [Nannochloropsis gaditana])

HSP 1 Score: 265.003 bits (676), Expect = 7.595e-90
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query:    1 MMDPSMMQAQMAASTSNPESNDLSSRSQLFSPAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
            MMDPSMMQAQMAASTSNPESNDLSSRSQLFSPAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY
Sbjct:    1 MMDPSMMQAQMAASTSNPESNDLSSRSQLFSPAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129          
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|673042719|ref|XP_008875320.1| (hypothetical protein H310_10663 [Aphanomyces invadans] >gi|574468993|gb|ETV96009.1| hypothetical protein H310_10663 [Aphanomyces invadans])

HSP 1 Score: 77.411 bits (189), Expect = 5.363e-16
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 0
Query:   24 SSRSQLFS-PAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
                + FS   V  N  +VE  +  M + +G+ AGV+G+T   QG    +  + +TS+ LL K+K    V  Y   KWY+FL      H++SF+LFWT+GY ++HIY
Sbjct:    5 QESQEFFSVENVQKNEGVVEFTQTAMCVVSGSMAGVIGLTAF-QGFAFMVALYVVTSVALLAKMKF--DVETYFNMKWYSFLFYGIGGHVVSFILFWTLGYGMVHIY 108          
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|698795400|ref|XP_009830729.1| (hypothetical protein H257_07016 [Aphanomyces astaci] >gi|574114305|gb|ETV79793.1| hypothetical protein H257_07016 [Aphanomyces astaci])

HSP 1 Score: 76.6406 bits (187), Expect = 1.061e-15
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 0
Query:   27 SQLFS-PAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
             + FS   V  N  +VE  +  M + AG+ AGV+G+T    G    ++ +  TS+ LL K+K    V  Y   KWY+FL      H +SF+LFWT+GY ++HIY
Sbjct:    8 QEFFSVENVQKNEGVVEFAQTAMCVVAGSMAGVIGLTAF-HGFVFMVVLYVFTSVALLAKMKF--DVETYFNMKWYSFLFYGIGGHFVSFVLFWTLGYGMVHIY 108          
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|1173957513|gb|OQS04022.1| (hypothetical protein THRCLA_20997 [Thraustotheca clavata])

HSP 1 Score: 73.559 bits (179), Expect = 1.792e-14
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 0
Query:   24 SSRSQLFS-PAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
            ++ ++ FS   +A N    E  R  MS+ +G+ AGV+G+TG+ QG    I+ +TLTS  LL K+K+    S Y      +F  A    HL+SF+LFWT+ Y L+HIY
Sbjct:    5 AAGTEFFSMENMAKNEAAAEFTRTAMSVVSGSIAGVMGLTGL-QGFGCMIVLYTLTSGALLAKMKM--DCSPYFNMNALSFTFAGIGGHLVSFILFWTLAYGLVHIY 108          
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|1173945420|gb|OQR94047.1| (hypothetical protein ACHHYP_01891 [Achlya hypogyna])

HSP 1 Score: 68.5514 bits (166), Expect = 1.789e-12
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 0
Query:   27 SQLFS-PAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
            ++ FS   +A N  +VE     MS+ +G+ AGV+G+TG+ QG    ++ + LTS  LL K+ L   V+ Y      +FL      HL+SF+LFWT+ Y L+HIY
Sbjct:    8 TEFFSMENMAKNEGVVEFTHTAMSVVSGSLAGVMGLTGV-QGFVCMVVLYLLTSGALLAKMGL--DVAPYFNMNVASFLFHGIGGHLVSFILFWTLAYGLVHIY 108          
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|1023275429|gb|KZT70292.1| (hypothetical protein DAEQUDRAFT_764748 [Daedalea quercina L-15889])

HSP 1 Score: 67.781 bits (164), Expect = 3.760e-12
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 0
Query:   11 MAASTSNPESNDLSSRSQLFSPAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
            M+A+T+  +   L     LF P V +NA  +  ++ L S FAGA AGVLG+   + G  +FI+   LTS  L  K K  G+ + Y+P  W+  L+     ++ SF+L WT+ Y ++H+Y
Sbjct:    1 MSATTTPDQQAQL-----LFPPNVQYNAARIYSIKFLSSCFAGAVAGVLGLENSL-GFALFILATLLTSACLYVKCK--GRPAKYIPGGWWE-LINPGQENISSFILVWTLFYGIVHVY 110          
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|729365602|ref|XP_010546958.1| (PREDICTED: ER membrane protein complex subunit 6 [Tarenaya hassleriana])

HSP 1 Score: 67.781 bits (164), Expect = 4.288e-12
Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 0
Query:    7 MQAQMAASTSNPESNDLSSRSQLFSPA-VAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
            M     + +S   S D  S  Q FS   + +N +I+++ R  +SI  G  AG+LG TG+  G   +++  ++TS+GLL K    G ++N     W   L       L+SF+LFWT  Y ++HI+
Sbjct:    1 MGGHNDSGSSEKRSKDAMSEIQTFSAENMQNNLRILQNSRTFLSIIGGVIAGILGFTGL-TGFVFYVLLMSITSVGLLAK---AGFLANTYFDSWNRVLFDGFLGGLMSFVLFWTFAYDIVHIF 120          
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|1001608928|gb|KXS12720.1| (transmembrane protein 93-like protein [Gonapodya prolifera JEL478])

HSP 1 Score: 67.781 bits (164), Expect = 4.514e-12
Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 0
Query:   11 MAASTSNPESNDLS-SRSQLFSPAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
            MA S + P    ++ S      PAV HNAQ++  +R  ++   G AAG+L +TG   G   +++   L   GL+  +   GK   Y  T W    + D   + LSF+LFWT+ Y+++HIY
Sbjct:    1 MATSNAPPSPTYVALSTPAYHEPAVRHNAQVISQLRSSVAAVLGIAAGILNLTGF-AGFAFYLVASVLVG-GLILALMAGGKADVYF-TDWSGPWIGDVGGNALSFVLFWTLAYSVVHIY 117          
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|527300022|gb|EPT00819.1| (hypothetical protein FOMPIDRAFT_1049328 [Fomitopsis pinicola FP-58527 SS1])

HSP 1 Score: 66.2402 bits (160), Expect = 1.153e-11
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   29 LFSPAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
            LF P V +NA  V  ++ L S FAGA AG+LG+   + G  ++I+   LTS  L  K K  G+ + Y+P  W+  LV     ++ SF+L WT+ Y ++H+Y
Sbjct:   14 LFPPNVQYNASRVYSIKFLSSCFAGAVAGILGLENSL-GFALYILATLLTSACLYVKCK--GRPAKYIPGGWWE-LVNPGQENISSFILVWTLFYGIVHVY 110          
BLAST of EWM26953.1 vs. NCBI_GenBank
Match: gi|567852339|ref|XP_006419333.1| (hypothetical protein CICLE_v10006078mg [Citrus clementina] >gi|567852343|ref|XP_006419335.1| hypothetical protein CICLE_v10006078mg [Citrus clementina] >gi|568871252|ref|XP_006488804.1| PREDICTED: ER membrane protein complex subunit 6 isoform X2 [Citrus sinensis] >gi|568871254|ref|XP_006488805.1| PREDICTED: ER membrane protein complex subunit 6 isoform X2 [Citrus sinensis] >gi|568871256|ref|XP_006488806.1| PREDICTED: ER membrane protein complex subunit 6 isoform X2 [Citrus sinensis] >gi|985463617|ref|XP_015388926.1| PREDICTED: ER membrane protein complex subunit 6 isoform X2 [Citrus sinensis] >gi|557521206|gb|ESR32573.1| hypothetical protein CICLE_v10006078mg [Citrus clementina] >gi|557521208|gb|ESR32575.1| hypothetical protein CICLE_v10006078mg [Citrus clementina])

HSP 1 Score: 65.855 bits (159), Expect = 2.496e-11
Identity = 39/122 (31.97%), Postives = 69/122 (56.56%), Query Frame = 0
Query:    9 AQMAASTSNPESNDLSSRSQLFSPA-VAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
            A  + S +  +SND+S+  Q+F+   +  N +++ + R  +SI  G  AG+LG TG++ G   + +   +TS+ L+ K K +  V +Y  + W   L+      L+SF+LFWT  Y ++HI+
Sbjct:    2 ATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLM-GFVFYFLIMAITSVCLMAKAKFS--VHSYFDS-WNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119          
The following BLAST results are available for this feature:
BLAST of EWM26953.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109107|gb|EWM26953.1|7.595e-90100.00hypothetical protein Naga_100304g4 [Nannochloropsi... [more]
gi|673042719|ref|XP_008875320.1|5.363e-1637.38hypothetical protein H310_10663 [Aphanomyces invad... [more]
gi|698795400|ref|XP_009830729.1|1.061e-1538.46hypothetical protein H257_07016 [Aphanomyces astac... [more]
gi|1173957513|gb|OQS04022.1|1.792e-1440.19hypothetical protein THRCLA_20997 [Thraustotheca c... [more]
gi|1173945420|gb|OQR94047.1|1.789e-1239.42hypothetical protein ACHHYP_01891 [Achlya hypogyna... [more]
gi|1023275429|gb|KZT70292.1|3.760e-1236.13hypothetical protein DAEQUDRAFT_764748 [Daedalea q... [more]
gi|729365602|ref|XP_010546958.1|4.288e-1233.06PREDICTED: ER membrane protein complex subunit 6 [... [more]
gi|1001608928|gb|KXS12720.1|4.514e-1234.17transmembrane protein 93-like protein [Gonapodya p... [more]
gi|527300022|gb|EPT00819.1|1.153e-1138.61hypothetical protein FOMPIDRAFT_1049328 [Fomitopsi... [more]
gi|567852339|ref|XP_006419333.1|2.496e-1131.97hypothetical protein CICLE_v10006078mg [Citrus cle... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3728rna3728Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications