rna3724, rna3724 (mRNA) Nannochloropsis gaditana

Overview
Namerna3724
Unique Namerna3724
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1343
Alignment locationCM002461.1:1061155..1062026 +

Link to JBrowse

Properties
Property NameValue
Productwd40 repeat-containing protein smu1
Orig transcript idgnl|cribi|Naga_102280g1.5980.mrna
Orig protein idgnl|cribi|Naga_102280g1.5980
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1061155..1062026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102280g1gene3588Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3724rna3724-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26958.1cds3715Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3724 ID=rna3724|Name=rna3724|organism=Nannochloropsis gaditana|type=mRNA|length=1343bp
ACGCCATCGCCCGTTCTCAGTCGAAAATGACCAACCCTGATAGAGGGAAA
TCCGAAAATAGGCATGATTGTGGGCAAGGAGGGAAAACTGTTGTAGTGCT
AAAAAACCAACAGACCTCAAGCACTGAGCAGAGAGGGCGGTGCTCGAGTC
TCACTGCGCATGCCATTTCATCTTCTCTCACGAGACGACGCCACCCCATA
AACATATACTAGAGCGTCAAAGCGGAGAGTCGAGGAAGGCGTTCAGCTCT
TCTTTGTCTGCCGTTGCATTTGGAAAGTCTGCATATGACTGCAAGCCGGA
CCTTTTGGCCCCAGCACTCTCACTAGGCTTGCCGATTCCAAGCAGGATGA
GTAGCCTGCCCACCTCCGCCGCCTCGGGCGTCTACGAAGTGGAGGCCTCG
GACGTGATCAAACTCATCCTTCAATTTTGCAAGGAGAACAATTTGCACAG
GACACTCCACACCCTTCAGTCCGAATCCCAGGTGGCCATGAACTCGGTGG
ACTCTATGGAGAATTTTCTCAGCGACGTTACCCAAGGAAGGTGGGACAGT
GTTTTGCCTCAAGCGGCGGGGCTTCAACTACCCCAAGACAAACTGCTGGC
GCTCTATGAGCAGGTCTGTCTCGAACTCATCGAAATGCGTGAAACGGAAC
TGGCCCGGGAAATGTTGCGAACGACAGAGCCATTACAGCTTTTAAAAACT
CAAGACCCGGACCGTTACTTTCGGTTGGAAACATTTTTGAACCGCAAGAT
CCACGACGCGCAGGAGCTGTATGCCTACGGCCTCAACAAGGAGCGGAGAC
GGCAGGAGATCGCCGACAGCCTCGCCGTCGAAGTCTCCGTCGTTCCCCCT
TCCCGCCTTCTTGCCCTCTTGCAGCAGGCCTTAAGGTATCAGCAACTTCA
AGGAAACCTGCCCAAGGACCGGCGTTACGATCTTTTTCGAGGCAGCGCCC
GCTCCGCGGGGAAGGACGAGGCGGAACGGCCCCCTAAGAAGCAGGCGGGC
CAAATCAAATTCGGATCCAAAACACACCCAGAGTGCGCGCGTTTCTCCCC
TGATGGCCTGCAGCTCGTCACGGGTTCTTTGGATGGCTTTGTGGAAGTGT
GGGACCCGGACACCTGCCGGCTTCGGAAGGACCTGCCCTACCAAGCCCGG
GAAGAATTGATGATGCACGACGCGGCGGTCTTGGCCCTGGCGTTCTCCAG
GGACGGAGAGATGCTGGCGACGGGGGACACGGACGGGGCTGTCAAGGTAT
GGAAACTGAGCAGTGGGAAGTGCCTCCGCCACCTTCCCCACGCCCACAGC
AAAGGCATTACCTCCCTGGCGTTTTCCCGAGATTCGTTGCAGC
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protein sequence of rna3724

>rna3724-protein ID=rna3724-protein|Name=rna3724|organism=Nannochloropsis gaditana|type=polypeptide|length=256bp
MCWTPMPMFRSYSRPLCPLSGLHAASCCRSSWPGGHDGATVPLKMFSLFV
VLFPFPPYEKLTEPSSAFRFAPSSSSSENLSPPLQEFRGHSSFVNCICFT
QDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLP
GGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFA
HCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGV
LKVWRA
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mRNA from alignment at CM002461.1:1061155..1062026+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3724 ID=rna3724|Name=rna3724|organism=Nannochloropsis gaditana|type=mRNA|length=872bp|location=Sequence derived from alignment at CM002461.1:1061155..1062026+ (Nannochloropsis gaditana)
GGGGGCCTACcgcgaagagaagggaggcacAATGCAACGCGTCCTTTGCT
CCATGTCGGGATAGAAAATGACAGGGACATAGCGAGGCGTACCATGCCAT
GTGCTGGACGCCAATGCCGATGTTTCGATCCTATTCACGACCCCTCTGTC
CCCTGAGTGGCCTGCATGCCGCGTCTTGCTGCCGAAGCTCCTGGCCTGGA
GGACACGATGGAGCAACCGTCCCACTGAAGATGTTTTCGCTTTTTGTTgt
gctctttccttttcctccttatgAGAAATTGACTGAACCTTCTTCCGCTT
TCCgtttcgctccctcctcctcctcctcggaaaacctttcccccccgctc
cagGAGTTCCGGGGGCACTCCTCCTTTGTGAACTGCATCTGTTTCACCCA
AGACGGGAGCCGCCTCTTGACTGGCAGCAGCGACGGCACGGTCAAAGTGT
GGGACGCCCGGAGCAGCGAATGCCTCCACACCTTCCGACCGGGGGTGGAG
TCCGCGGTCGATCTGGAGGCGATGGTGCATACGGTCCTGCCCTTGCCAGG
GGGAGCTGACTTGTTTTTTATCGCCAACCGGACCTCCACGGCCTATGTGA
CGACGGCACAGGGGCAGGTGGTGAAAAGGATGTCGAGCGGGAAGAAAGTA
GGGGGGGATTTcgccgcggccgccctgAGTCCCAAGGGTACTTTTGCGCA
TTgtgcgggggaggacgggataGTGTATTCTTTTCAgctggggaaagggg
attTGGAAAGCTTTGtgaaggtgggggagaaggaagtgatCGGGGTGGCC
CACCACCCGCACCGGAATTTGGTGGTGACGTTTGGGGACGAAGGCGTGCT
CAAGgtgtggagggcgtgaggg
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Coding sequence (CDS) from alignment at CM002461.1:1061155..1062026+

>rna3724 ID=rna3724|Name=rna3724|organism=Nannochloropsis gaditana|type=CDS|length=771bp|location=Sequence derived from alignment at CM002461.1:1061155..1062026+ (Nannochloropsis gaditana)
ATGTGCTGGACGCCAATGCCGATGTTTCGATCCTATTCACGACCCCTCTG
TCCCCTGAGTGGCCTGCATGCCGCGTCTTGCTGCCGAAGCTCCTGGCCTG
GAGGACACGATGGAGCAACCGTCCCACTGAAGATGTTTTCGCTTTTTGTT
gtgctctttccttttcctccttatgAGAAATTGACTGAACCTTCTTCCGC
TTTCCgtttcgctccctcctcctcctcctcggaaaacctttcccccccgc
tccagGAGTTCCGGGGGCACTCCTCCTTTGTGAACTGCATCTGTTTCACC
CAAGACGGGAGCCGCCTCTTGACTGGCAGCAGCGACGGCACGGTCAAAGT
GTGGGACGCCCGGAGCAGCGAATGCCTCCACACCTTCCGACCGGGGGTGG
AGTCCGCGGTCGATCTGGAGGCGATGGTGCATACGGTCCTGCCCTTGCCA
GGGGGAGCTGACTTGTTTTTTATCGCCAACCGGACCTCCACGGCCTATGT
GACGACGGCACAGGGGCAGGTGGTGAAAAGGATGTCGAGCGGGAAGAAAG
TAGGGGGGGATTTcgccgcggccgccctgAGTCCCAAGGGTACTTTTGCG
CATTgtgcgggggaggacgggataGTGTATTCTTTTCAgctggggaaagg
ggattTGGAAAGCTTTGtgaaggtgggggagaaggaagtgatCGGGGTGG
CCCACCACCCGCACCGGAATTTGGTGGTGACGTTTGGGGACGAAGGCGTG
CTCAAGgtgtggagggcgtga
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Synonyms
Publications