EWM26958.1, cds3715 (CDS) Nannochloropsis gaditana

Overview
NameEWM26958.1
Unique Namecds3715
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1061253..1062023 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26958.1
Productwd40 repeat-containing protein smu1
Orig transcript idgnl|cribi|Naga_102280g1.5980.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1061253..1062023 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|585109113|gb|EWM26958.1| (wd40 repeat-containing protein smu1 [Nannochloropsis gaditana])

HSP 1 Score: 525.783 bits (1353), Expect = 0.000e+0
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
Query:    1 MCWTPMPMFRSYSRPLCPLSGLHAASCCRSSWPGGHDGATVPLKMFSLFVVLFPFPPYEKLTEPSSAFRFAPSSSSSENLSPPLQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWRA 256
            MCWTPMPMFRSYSRPLCPLSGLHAASCCRSSWPGGHDGATVPLKMFSLFVVLFPFPPYEKLTEPSSAFRFAPSSSSSENLSPPLQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWRA
Sbjct:    1 MCWTPMPMFRSYSRPLCPLSGLHAASCCRSSWPGGHDGATVPLKMFSLFVVLFPFPPYEKLTEPSSAFRFAPSSSSSENLSPPLQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWRA 256          
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|553180209|ref|XP_005853364.1| (smu-1 suppressor of mec-8 and unc-52-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295700|gb|EKU22999.1| smu-1 suppressor of mec-8 and unc-52-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 358.992 bits (920), Expect = 2.402e-118
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 0
Query:   84 LQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWRA 256
            L+EFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWRA
Sbjct:  402 LKEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWRA 574          
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|298710884|emb|CBJ26393.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 207.223 bits (526), Expect = 4.146e-60
Identity = 93/173 (53.76%), Postives = 128/173 (73.99%), Query Frame = 0
Query:   84 LQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWRA 256
            L+EFRGH+S+VN   +  DG++++TGS+DGTVKVWDA+++E LHTF P +      EA VHTV PLPG A+   ++NRTSTA++ T QGQVV+  +S K V  DF  A LSPKG + +CAGEDG ++ F     ++E  +KV EKE+IG+AHHPHRNL+ TF +EG+LK+W++
Sbjct:  344 LKEFRGHTSYVNTAVYMHDGAKVVTGSADGTVKVWDAKTTENLHTFHPALSIGSHTEASVHTVRPLPGSAEQVLVSNRTSTAFLCTLQGQVVRSFTSPKSVRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWKS 516          
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|1098777840|ref|XP_018849489.1| (PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1-like [Juglans regia])

HSP 1 Score: 192.2 bits (487), Expect = 7.580e-55
Identity = 94/178 (52.81%), Postives = 122/178 (68.54%), Query Frame = 0
Query:   84 LQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRP------GVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWR 255
            L+EFRGHSS+VN   FT DGSR++T SSD TVKVWDA++++CL TF+P      G       +A V++V   P   D   + N+TS+ Y+ T QGQVVK  SSGK+ GGDFAAA +SPKG + +C GED  +Y F    G LE  +KV EK+VIGV HHPHRNLV TFG++  +K+W+
Sbjct:  286 LKEFRGHSSYVNDAIFTTDGSRVITASSDCTVKVWDAKTTDCLQTFKPPPPLRGG-------DASVNSVHLFPKNTDHIIVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFAAACVSPKGEWIYCVGEDRNMYCFSYQSGKLEHLLKVHEKDVIGVTHHPHRNLVATFGEDCTMKLWK 456          
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|1142673768|gb|ONM31811.1| (Suppressor of mec-8 and unc-52 protein homolog 1 [Zea mays])

HSP 1 Score: 186.037 bits (471), Expect = 6.070e-54
Identity = 89/178 (50.00%), Postives = 121/178 (67.98%), Query Frame = 0
Query:   84 LQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRP------GVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWR 255
            L+EFRGHSS+VN   FT DGSR++T SSD TVKVWD ++++CLHTF+P      G       +A V++V   P   D   + N+TS+ ++ T QGQVVK  SSGK+ GGDF AA++SPKG + +C GED  +Y F    G LE  +KV EK+VIG+ HHPHRNLV T  ++ ++K+W+
Sbjct:  150 LKEFRGHSSYVNYAIFTTDGSRVITASSDCTVKVWDTKTTDCLHTFKPPPPLRGG-------DASVNSVHLFPKNTDHIVVCNKTSSIFIMTLQGQVVKSFSSGKREGGDFVAASVSPKGEWIYCVGEDMNMYCFSYQSGKLEHLMKVHEKDVIGITHHPHRNLVATIAEDCMMKIWK 320          
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|502152363|ref|XP_004508892.1| (PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X2 [Cicer arietinum])

HSP 1 Score: 188.734 bits (478), Expect = 6.369e-54
Identity = 90/178 (50.56%), Postives = 120/178 (67.42%), Query Frame = 0
Query:   84 LQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRP------GVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWR 255
            L+EFRGH+S+VN   FT DGSR++T SSD TVKVWD ++++C+ TF+P      G       +A V++V   P   D   + N+TS+ Y+ T QGQVVK  SSGK+ GGDF AA +SPKG + +C GED  +Y F    G LE  +KV EKE+IGV HHPHRNLV TF ++G +K+W+
Sbjct:  258 LKEFRGHTSYVNDATFTSDGSRVITASSDCTVKVWDLKTTDCIQTFKPPPPLRGG-------DASVNSVYIFPKNTDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACISPKGEWIYCVGEDRNMYCFSYQSGKLEHLMKVHEKEIIGVTHHPHRNLVATFSEDGTMKLWK 428          
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|1035945797|gb|OAY70338.1| (Suppressor of mec-8 and unc-52 protein [Ananas comosus])

HSP 1 Score: 191.045 bits (484), Expect = 6.621e-54
Identity = 91/178 (51.12%), Postives = 122/178 (68.54%), Query Frame = 0
Query:   84 LQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRP------GVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWR 255
            L+EFRGH+S+VN   +T DGSR++T SSD TVKVWD +S++CLHTF+P      G       +A V++V   P   +   + N+TS+ Y+ T QGQVVK  SSGK+ GGDF AA +SPKG + +C GED  +Y F    G LE  +KV EK+VIGV HHPHRNLVVT+G++  +K+W+
Sbjct:  352 LKEFRGHTSYVNNAIYTNDGSRVITASSDCTVKVWDMKSTDCLHTFKPPPPLRGG-------DASVNSVHLFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDMNIYCFSHQTGKLEHLMKVHEKDVIGVTHHPHRNLVVTYGEDCTMKIWK 522          
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|449441804|ref|XP_004138672.1| (PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Cucumis sativus])

HSP 1 Score: 190.66 bits (483), Expect = 8.061e-54
Identity = 92/178 (51.69%), Postives = 122/178 (68.54%), Query Frame = 0
Query:   84 LQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRP------GVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWR 255
            L+EFRGHSS+VN   FT DG+R++T SSD TVKVWD ++++CLHTF+P      G       +A V++V   P  AD   + N+TS+ Y+ T QGQVVK  SSGK+ GGDF AA LSPKG + +C GED  +Y F    G LE  +KV EK+VIGV+HHPHRNLV T+ ++  +K+W+
Sbjct:  342 LKEFRGHSSYVNDAVFTNDGARVITASSDCTVKVWDVKTTDCLHTFKPPPPLRGG-------DASVNSVHIFPKNADHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACLSPKGEWIYCIGEDRNMYCFSHQSGKLEHLMKVHEKDVIGVSHHPHRNLVATYSEDSTMKLWK 512          
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|694649920|ref|XP_009481818.1| (PREDICTED: WD40 repeat-containing protein SMU1-like, partial [Pelecanus crispus])

HSP 1 Score: 180.644 bits (457), Expect = 1.056e-53
Identity = 82/172 (47.67%), Postives = 121/172 (70.35%), Query Frame = 0
Query:   84 LQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWR 255
            L+EFRGHSSFVN   FTQDG  +++ SSDGTVKVW+ +++EC +TF+  + S    +  V++V+ LP   + F + NR++T  +   QGQ+V+  SSGK+ GGDF   ALSP+G + +C GED ++Y F    G LE  + V EK+VIG+AHHPH+NL+ T+ ++G+LK+W+
Sbjct:   10 LKEFRGHSSFVNEATFTQDGHYIISASSDGTVKVWNVKTTECSNTFKS-LGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 180          
BLAST of EWM26958.1 vs. NCBI_GenBank
Match: gi|502152361|ref|XP_004508891.1| (PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 [Cicer arietinum])

HSP 1 Score: 190.274 bits (482), Expect = 1.310e-53
Identity = 90/178 (50.56%), Postives = 120/178 (67.42%), Query Frame = 0
Query:   84 LQEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRP------GVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWR 255
            L+EFRGH+S+VN   FT DGSR++T SSD TVKVWD ++++C+ TF+P      G       +A V++V   P   D   + N+TS+ Y+ T QGQVVK  SSGK+ GGDF AA +SPKG + +C GED  +Y F    G LE  +KV EKE+IGV HHPHRNLV TF ++G +K+W+
Sbjct:  342 LKEFRGHTSYVNDATFTSDGSRVITASSDCTVKVWDLKTTDCIQTFKPPPPLRGG-------DASVNSVYIFPKNTDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACISPKGEWIYCVGEDRNMYCFSYQSGKLEHLMKVHEKEIIGVTHHPHRNLVATFSEDGTMKLWK 512          
The following BLAST results are available for this feature:
BLAST of EWM26958.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109113|gb|EWM26958.1|0.000e+0100.00wd40 repeat-containing protein smu1 [Nannochlorops... [more]
gi|553180209|ref|XP_005853364.1|2.402e-11899.42smu-1 suppressor of mec-8 and unc-52-like protein,... [more]
gi|298710884|emb|CBJ26393.1|4.146e-6053.76conserved unknown protein [Ectocarpus siliculosus][more]
gi|1098777840|ref|XP_018849489.1|7.580e-5552.81PREDICTED: suppressor of mec-8 and unc-52 protein ... [more]
gi|1142673768|gb|ONM31811.1|6.070e-5450.00Suppressor of mec-8 and unc-52 protein homolog 1 [... [more]
gi|502152363|ref|XP_004508892.1|6.369e-5450.56PREDICTED: suppressor of mec-8 and unc-52 protein ... [more]
gi|1035945797|gb|OAY70338.1|6.621e-5451.12Suppressor of mec-8 and unc-52 protein [Ananas com... [more]
gi|449441804|ref|XP_004138672.1|8.061e-5451.69PREDICTED: suppressor of mec-8 and unc-52 protein ... [more]
gi|694649920|ref|XP_009481818.1|1.056e-5347.67PREDICTED: WD40 repeat-containing protein SMU1-lik... [more]
gi|502152361|ref|XP_004508891.1|1.310e-5350.56PREDICTED: suppressor of mec-8 and unc-52 protein ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3724rna3724Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications