rna3723, rna3723 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3723
Unique Name	rna3723
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1274
Alignment location	CM002461.1:1058582..1061006 +

Link to JBrowse

Properties


Property Name	Value
Product	wd40 repeat-containing protein smu1
Orig transcript id	gnl\|cribi\|Naga_101032g2.3522.mrna
Orig protein id	gnl\|cribi\|Naga_101032g2.3522
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1058582..1061006 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101032g2	gene3587	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3723	rna3723-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26959.1	cds3714	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:1058582..1061006+
coding sequence from alignment at CM002461.1:1058582..1061006+

mRNA sequence

>rna3723 ID=rna3723|Name=rna3723|organism=Nannochloropsis gaditana|type=mRNA|length=1274bp
ACTGAGAACGGGCGATGGCGTGTCATAGATTCTGGAATAGTATGGAAGAG
GGTGGAGGGTAAAGATGGAGCTGAAGAGAGACGACTCCATGGCAGCGATA
TGCTCAGGCGCACCAGCCGCCTTTAATGCGAGGTTTCTCTACCACAATAC
CGCGACGAACTCAAGGGAAATAGCATCTTGTATAGAAACTTGAAAGTGCT
TTGATGGCAGACAGCGATGGCTGCCCTTTTTGAGGCGTTTATTGATTCTG
CTATCTCTCTTCTACCTCCTGGCATACCTCCCCCCCTCCCCATTTTTAAC
CGCATATCAAATACAGTCCGCTTCGGTATGGGTAAAGCCCCACGCGGTCG
AAAAGGGGGACGCAGTAAAGGAGGGCGTTATTTTGCGCCCAAAGCCCGCG
GCGAGGGCTTGACCAAAAGACAGTGCACACAGCGGCCCCCACCTCAGCAC
TATCCCCCACCGGGTTCCACGGCGAAAAGAAAAGGTCGTGCCCGCAAGCA
GGGCGACCGAAATGGCCACGCATTCAGCAACGACTACCGATCGCGCGATA
GGGGCTTTGTTCTGGCGCCCAAAAGCCACCAGAAAGGCGGGAATTTGTTC
GACGTGATGCCCGTGGGGGTGACGCGGCTAAAGAAGAGCGAAAAGAAGGT
GGGGGTGGCCATCCTAAAAACATTGACACCCGGTACGCCGAGGGAGACAA
GGGAAGAGAATATCGCTAGCCCTGCACGGGTAACGGATGGCATTTTCCCC
AACGTAGCTAGCACATTTTGGAAGAAGAGATAGAGGACTGCCACGTTCAT
GCATGCCACTCCCTCCCTCCCTTCCTCCCCCTCCTCCCCCTCCTCTCCCT
CCCTCCCTCCCTCCCTTCCTCCCCCTGGTCCCACTCCCTCCCTCCCTTCC
TCCCCCCTCCTTAGCCCTACCCTCCGGACCTCCCCCTCCATGGAGTCAAA
TCGACAAGCGCCTCGGCCCCGAGCCCCTCCTCCTCCAGGAATGTCCCTGG
CTCGCCCCCGTCCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTC
CTCCCTCCCTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTC
CCTCCCTTCCTCCCCCCCTTTCTCCCCTCCGCCCTCCCTCCATGACGAGC
TCCTTGCCTTCCAACGCTACGCTTCCTTGACGCCGATGGAGCAACGTGCA
CGTATAAAGTGGTGGAGGCCTTGAACAACCTGATAAAGGTGCGATCTTGC
TCCCTCCCTCCCTCCCTCCCTCCC

protein sequence of rna3723

>rna3723-protein ID=rna3723-protein|Name=rna3723|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MSSLPTSAASGVYEVEASDVIKLILQFCKENNLHRTLHTLQSESQVAMNS
VDSMENFLSDVTQGRWDSVLPQAAGLQLPQDKLLALYEQVCLELIEMRET
ELAREMLRTTEPLQLLKTQDPDRYFRLETFLNRKIHDAQELYAYGLNKER
RRQEIADSLAVEVSVVPPSRLLALLQQALRYQQLQGNLPKDRRYDLFRGS
ARSAGKDEAERPPKKQAGQIKFGSKTHPECARFSPDGLQLVTGSLDGFVE
VWDPDTCRLRKDLPYQAREELMMHDAAVLALAFSRDGEMLATGDTDGAVK
VWKLSSGKCLRHLPHAHSKGITSLAFSRDSLQ

mRNA from alignment at CM002461.1:1058582..1061006+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3723 ID=rna3723|Name=rna3723|organism=Nannochloropsis gaditana|type=mRNA|length=2425bp|location=Sequence derived from alignment at CM002461.1:1058582..1061006+ (Nannochloropsis gaditana)
ACGCCATCGCCCGTTCTCAGTCGAAAATGACCAACCCTGATAGAGGGAAA
TCCGAAAATAGGCATGAttgtgggcaaggagggaaaactGTTGTAGTGCT
AAAAAACCAACAGACCTCAAGCACTGAGCAGAGAGGGCGGTGCTCGAGTC
TCACTGCGCATGCCATTTCATCTTCTCTCACGAGACGACGCCACCCCATA
AACATATACTAGAGCGTCAAAGCGGAGAGTCGAGGAAGGCGTTCAGCTCT
TCTTTGTCTGCCGTTGCATTTGGAAAGTCTGCATATGACTGCAAGCCGGA
CCTTTTGGCCCCAGCACTCTCACTAGGTAGGAGACGTCTTTCGAAAGCCA
GACTCACCGCCTCCATTGACCGATACAAAGACATGGGCGAGGCTCTTTTG
TGTTTATTGGAAAGGCCTTCTCGGGACAGATTAGTtcgtaggaagggggg
ggaagaggtatTACGACGAGCCCGCCGCCTGCATGACCTCTGTGGGACGG
AGCAATCAAGCATTacattccctttcttctggGGCTTCCCTGCTTCCATC
CCGGGTTGAACAGTGCGATTCATGGTGCAGTCCGGCCCTCGTTGCAGCGC
TGCCTGGCCGACGCGCGCATGACCACCGCCCTTTCTACCCTAGTACCTCA
TTgccccctgccttgccttttcccccaccagGCTTGCCGATTCCAAGCAG
GATGAGTAGCctgcccacctccgccgcctcgggCGTCTACGAAGTGGAGG
CCTCGGACGTGATCAAACTCATCCTTCAATTTTGCAAGGAGAACAATTTG
CACAGGACACTCCACACCCTTCAGTCCGAATCCCAGGTGGCCATGAACTC
GGTGGACTCTATGGAGAATTTTCTCAGCGACGTTACCCAAGGAAGGTGGG
ACAGTGTTTTGCCTCAAGCGGCGGGGCTTCAACTACCCCAAGACAAACTG
CTGGCGCTCTATGAGCAGGTGCGTGGGTTGGGTGAGCGGCACCTAGGGAG
GGGAACCCCAACGGAAGGAAAGCCTTGCAGGTTGTTTTTACCCTTCCTTT
GTTCCTGTATTGTTGGTATCCCTAGCAAGGGCTCGACCGTGAGCATTTCG
TCGATACTGTCAGGGCTGAAAGTGCCGCACGACCCAAATTCATATGTGAC
CCGTCGCTCCGGGtagcctttttcttctcgtcctgAACATGCTTCCTAAT
ATCTGGCTATcgatctcttccccccacttTTCACGCTGTTTTTCTCCCGC
AGGTCTGTCTCGAACTCATCGAAATGCGTGAAACGGAACTGGCCCGGGAA
ATGTTGCGAACGACAGAGCCATTACAGCTTTTAAAAACTCAAGACCCGGA
CCGTTACTTTCGGTTGGAAACATTTTTGAACCGCAAGATCCACGACGCGC
AGGAGCTGTATGCCTACGGCCTCAACAAGGAGCGGAGACGGCAGGAGATC
GCCGACAGCCTCGCCGTCGAAGTCTCCGTcgttcccccttcccgccttct
tgccctcttgcAGCAGGCCTTAAGGTATCAGCAACTTCAAGGAAACCTGC
CCAAGGACCGGCGTTACGATCTTTTTCGAGGCAGCGCCCGCTccgcgggg
aaggacgaggcggaaCGGCCCCCTAAGAAGCAGGTGCTCACATGCTTCTT
TTCCAGCCCCTGTGGAAGATACCCGGACCTTTCGGACTTTTTCTGGAAAA
CCCCGTCGTTGGTACCATTGCcgcgcccccttccccgaaGCTCATGCATT
CTgcgcttcccttttctctttttccctctccccccccccccctcttcccc
tttcccccccctcaaaTTGTATTTCTTAATAGGCGGGCCAAATCAAATTC
GGATCCAAAACACACCCAGAGTGCGCGCGTTTCTCCCCTGATGGCCTGCA
GCTCGTCACGGGTTCTTTGGATGGCTTTGTGGAAGTGTGGGACCCGGACA
CCTGCCGGCTTCGGAAGGACCTGCCCTACCAAGCCCGGGAAGAATTGATG
ATGCACGACGCGGCGGTCTTGGCCCTGGCGTTCTCCAGGGACGGAGAGAT
GCTGGCGACGGGGGACACGGACGGGGCTGTCAAggtacccggaggagagc
aggggggCCGttggggcgggaaaggggatagGGGGGTGCCGAGGTGGCCA
GAGAAAAGGTCTCTGGTGTCAATCGAGGAATTAGAACAGGCACGGGGGGC
GGCATGAatcgtccttcctccctccctttctccctccctccttccctcct
tccctgcttccctccctatttcccacctttcctccttccctccccttctc
cccaccttGTCTCTTCCGGTGCCCGCAGGTATGGAAACTGAGCAGTGGGA
agtgcctccgccaccttccccacgcccacagCAAAGGCATTACCTCCCTG
GCGTTTTCCCGAGATTCGTTGCAGC

Coding sequence (CDS) from alignment at CM002461.1:1058582..1061006+

>rna3723 ID=rna3723|Name=rna3723|organism=Nannochloropsis gaditana|type=CDS|length=3988bp|location=Sequence derived from alignment at CM002461.1:1058582..1061006+ (Nannochloropsis gaditana)
ATGAGTAGCctgcccacctccgccgcctcgggCGTCTACGAAGTGGAGGC
CTCGGACGTGATCAAACTCATCCTTCAATTTTGCAAGGAGAACAATTTGC
ACAGGACACTCCACACCCTTCAGTCCGAATCCCAGGTGGCCATGAACTCG
GTGGACTCTATGGAGAATTTTCTCAGCGACGTTACCCAAGGAAGGTGGGA
CAGTGTTTTGCCTCAAGCGGCGGGGCTTCAACTACCCCAAGACAAACTGC
TGGCGCTCTATGAGCAGGTCTGTCTCGAACTCATCGAAATGCGTGAAACG
GAACTGGCCCGGGAAATGTTGCGAACGACAGAGCCATTACAGCTTTTAAA
AACTCAAGACCCGGACCGTTACTTTCGGTTGGAAACATTTTTGAACCGCA
AGATCCACGACGCGCAGGAGCTGTATGCCTACGGCCTCAACAAGGAGCGG
AGACGGCAGGAGATCGCCGACAGCCTCGCCGTCGAAGTCTCCGTcgttcc
cccttcccgccttcttgccctcttgcAGCAGGCCTTAAGGTATCAGCAAC
TTCAAGGAAACCTGCCCAAGGACCGGCGTTACGATCTTTTTCGAGGCAGC
GCCCGCTccgcggggaaggacgaggcggaaCGGCCCCCTAAGAAGCAGGC
GGGCCAAATCAAATTCGGATCCAAAACACACCCAGAGTGCGCGCGTTTCT
CCCCTGATGGCCTGCAGCTCGTCACGGGTTCTTTGGATGGCTTTGTGGAA
GTGTGGGACCCGGACACCTGCCGGCTTCGGAAGGACCTGCCCTACCAAGC
CCGGGAAGAATTGATGATGCACGACGCGGCGGTCTTGGCCCTGGCGTTCT
CCAGGGACGGAGAGATGCTGGCGACGGGGGACACGGACGGGGCTGTCAAg
GTATGGAAACTGAGCAGTGGGAagtgcctccgccaccttccccacgccca
cagCAAAGGCATTACCTCCCTGGCGTTTTCCCGAGATTCGTTGCAGCATG
AGTAGCctgcccacctccgccgcctcgggCGTCTACGAAGTGGAGGCCTC
GGACGTGATCAAACTCATCCTTCAATTTTGCAAGGAGAACAATTTGCACA
GGACACTCCACACCCTTCAGTCCGAATCCCAGGTGGCCATGAACTCGGTG
GACTCTATGGAGAATTTTCTCAGCGACGTTACCCAAGGAAGGTGGGACAG
TGTTTTGCCTCAAGCGGCGGGGCTTCAACTACCCCAAGACAAACTGCTGG
CGCTCTATGAGCAGGTCTGTCTCGAACTCATCGAAATGCGTGAAACGGAA
CTGGCCCGGGAAATGTTGCGAACGACAGAGCCATTACAGCTTTTAAAAAC
TCAAGACCCGGACCGTTACTTTCGGTTGGAAACATTTTTGAACCGCAAGA
TCCACGACGCGCAGGAGCTGTATGCCTACGGCCTCAACAAGGAGCGGAGA
CGGCAGGAGATCGCCGACAGCCTCGCCGTCGAAGTCTCCGTcgttccccc
ttcccgccttcttgccctcttgcAGCAGGCCTTAAGGTATCAGCAACTTC
AAGGAAACCTGCCCAAGGACCGGCGTTACGATCTTTTTCGAGGCAGCGCC
CGCTccgcggggaaggacgaggcggaaCGGCCCCCTAAGAAGCAGGCGGG
CCAAATCAAATTCGGATCCAAAACACACCCAGAGTGCGCGCGTTTCTCCC
CTGATGGCCTGCAGCTCGTCACGGGTTCTTTGGATGGCTTTGTGGAAGTG
TGGGACCCGGACACCTGCCGGCTTCGGAAGGACCTGCCCTACCAAGCCCG
GGAAGAATTGATGATGCACGACGCGGCGGTCTTGGCCCTGGCGTTCTCCA
GGGACGGAGAGATGCTGGCGACGGGGGACACGGACGGGGCTGTCAAgGTA
TGGAAACTGAGCAGTGGGAagtgcctccgccaccttccccacgcccacag
CAAAGGCATTACCTCCCTGGCGTTTTCCCGAGATTCGTTGCAGCATGAGT
AGCctgcccacctccgccgcctcgggCGTCTACGAAGTGGAGGCCTCGGA
CGTGATCAAACTCATCCTTCAATTTTGCAAGGAGAACAATTTGCACAGGA
CACTCCACACCCTTCAGTCCGAATCCCAGGTGGCCATGAACTCGGTGGAC
TCTATGGAGAATTTTCTCAGCGACGTTACCCAAGGAAGGTGGGACAGTGT
TTTGCCTCAAGCGGCGGGGCTTCAACTACCCCAAGACAAACTGCTGGCGC
TCTATGAGCAGGTCTGTCTCGAACTCATCGAAATGCGTGAAACGGAACTG
GCCCGGGAAATGTTGCGAACGACAGAGCCATTACAGCTTTTAAAAACTCA
AGACCCGGACCGTTACTTTCGGTTGGAAACATTTTTGAACCGCAAGATCC
ACGACGCGCAGGAGCTGTATGCCTACGGCCTCAACAAGGAGCGGAGACGG
CAGGAGATCGCCGACAGCCTCGCCGTCGAAGTCTCCGTcgttcccccttc
ccgccttcttgccctcttgcAGCAGGCCTTAAGGTATCAGCAACTTCAAG
GAAACCTGCCCAAGGACCGGCGTTACGATCTTTTTCGAGGCAGCGCCCGC
TccgcggggaaggacgaggcggaaCGGCCCCCTAAGAAGCAGGCGGGCCA
AATCAAATTCGGATCCAAAACACACCCAGAGTGCGCGCGTTTCTCCCCTG
ATGGCCTGCAGCTCGTCACGGGTTCTTTGGATGGCTTTGTGGAAGTGTGG
GACCCGGACACCTGCCGGCTTCGGAAGGACCTGCCCTACCAAGCCCGGGA
AGAATTGATGATGCACGACGCGGCGGTCTTGGCCCTGGCGTTCTCCAGGG
ACGGAGAGATGCTGGCGACGGGGGACACGGACGGGGCTGTCAAgGTATGG
AAACTGAGCAGTGGGAagtgcctccgccaccttccccacgcccacagCAA
AGGCATTACCTCCCTGGCGTTTTCCCGAGATTCGTTGCAGCATGAGTAGC
ctgcccacctccgccgcctcgggCGTCTACGAAGTGGAGGCCTCGGACGT
GATCAAACTCATCCTTCAATTTTGCAAGGAGAACAATTTGCACAGGACAC
TCCACACCCTTCAGTCCGAATCCCAGGTGGCCATGAACTCGGTGGACTCT
ATGGAGAATTTTCTCAGCGACGTTACCCAAGGAAGGTGGGACAGTGTTTT
GCCTCAAGCGGCGGGGCTTCAACTACCCCAAGACAAACTGCTGGCGCTCT
ATGAGCAGGTCTGTCTCGAACTCATCGAAATGCGTGAAACGGAACTGGCC
CGGGAAATGTTGCGAACGACAGAGCCATTACAGCTTTTAAAAACTCAAGA
CCCGGACCGTTACTTTCGGTTGGAAACATTTTTGAACCGCAAGATCCACG
ACGCGCAGGAGCTGTATGCCTACGGCCTCAACAAGGAGCGGAGACGGCAG
GAGATCGCCGACAGCCTCGCCGTCGAAGTCTCCGTcgttcccccttcccg
ccttcttgccctcttgcAGCAGGCCTTAAGGTATCAGCAACTTCAAGGAA
ACCTGCCCAAGGACCGGCGTTACGATCTTTTTCGAGGCAGCGCCCGCTcc
gcggggaaggacgaggcggaaCGGCCCCCTAAGAAGCAGGCGGGCCAAAT
CAAATTCGGATCCAAAACACACCCAGAGTGCGCGCGTTTCTCCCCTGATG
GCCTGCAGCTCGTCACGGGTTCTTTGGATGGCTTTGTGGAAGTGTGGGAC
CCGGACACCTGCCGGCTTCGGAAGGACCTGCCCTACCAAGCCCGGGAAGA
ATTGATGATGCACGACGCGGCGGTCTTGGCCCTGGCGTTCTCCAGGGACG
GAGAGATGCTGGCGACGGGGGACACGGACGGGGCTGTCAAgGTATGGAAA
CTGAGCAGTGGGAagtgcctccgccaccttccccacgcccacagCAAAGG
CATTACCTCCCTGGCGTTTTCCCGAGATTCGTTGCAGC

Synonyms

Publications