rna3720, rna3720 (mRNA) Nannochloropsis gaditana

Overview
Namerna3720
Unique Namerna3720
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length475
Alignment locationCM002461.1:1051742..1053229 -

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Properties
Property NameValue
Productcoiled-coil domain-containing protein 47
Orig transcript idgnl|cribi|Naga_100930g1.3192.mrna
Orig protein idgnl|cribi|Naga_100930g1.3192
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1051742..1053229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100930g1gene3584Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3720rna3720-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26962.1cds3711Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3720 ID=rna3720|Name=rna3720|organism=Nannochloropsis gaditana|type=mRNA|length=475bp
CCTCTTCCTCCCTCCCTCCTCCTCCCCGGCAGGGGGCATCCCTACCTCCC
TCCTGTCATTTTACGGGCCCGCTTCCTTCTCCCCACCACGGCCACGGGTA
TGAAGGCACACCTCTTACCCTTGCTTCAGTTGGTGTTTGACCTGCTCGAT
CATGTGGCGGGAGGGGGAGTGATGTTGTCGGAGGCGGCACGCAGAAGGAG
CAAGGAGGTCCGGGCGGAGATTGAAGCCAAGAAATTGAGAGCCTTGCAGG
TGGCGCATCAGCAAGAGAGGGAGTGGAAAAGAAGAGAAAAACAACGGAAA
GAAGAAGAGGCACTCGCACGGTCGACTCCGGAGGCAAAGCGGAAGAAGGA
AGAGAAGGAAATGAAGAAGAAAAGGAGGGACGCAGAAAAGTCACGCTGGC
CGAAGACCCGGATTAGTTAGATTATGACGTGCAATTAAGGCGAGGGTAAG
CCAAATAACCATAGCATGTACAAGT
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protein sequence of rna3720

>rna3720-protein ID=rna3720-protein|Name=rna3720|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp
MPTAASPPPLRALLLLFWGAIGIQCMTAAAHGITDDEVEDEFLTPDPPPR
PFATFSWLGLPSRVSRISMYEICMLQILLCFLLRFRWGRRENERIKALFL
EQCASLLSEQFAYVGPGSEVGREGSQPAEGRPGKEEDLVAFKEANACFQF
WASGRRHLPRGMAITVDLQPRQDLLHVLRARVLPGEDSVTLEAGLSPEDV
PPIILALSRRLHHRSLHLLTPDLLHHTSLLLLPVLLPDLDTAHFVVYADN
AAPVPLALPPRLARRLNEHKHFFDHIHISDQNSTPVG
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mRNA from alignment at CM002461.1:1051742..1053229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3720 ID=rna3720|Name=rna3720|organism=Nannochloropsis gaditana|type=mRNA|length=1488bp|location=Sequence derived from alignment at CM002461.1:1051742..1053229- (Nannochloropsis gaditana)
TTGCACAGGTGCCGCATCAAGGCTTGGCAAGCGCGTCGGAACGAGCGGCG
CCTGGTTGGAAGTCAGGCATTGCCGGGGGTGGACATGCCGACGGCAGCCT
CCCCTCCCCCATTACGAGCATTACTCCTTCTCTTTTGGGGTGCGATCGGG
ATCCAATGCATGACTGCAGCCGCTCATGGCATCACAGATGATGAAGTGGA
GGACGAATTCTTGACGCCCGATCCCCCACCCCGTCCTTTTGCCACTTTTT
CCTGGCTGGGTCTTCCCTCCCGTGTCAGTCGCATTTCCATGTACGAAATC
TGCATGCTTCAAATATTGCTGTGCTTCCTGCTGCGTTTCCGATGGGGCCG
ACGGGAGAATGAACGCATCAAGGCCCTGTTTTTGGAGCAATGTGCATCTC
TGTTGTCGGAGCAATTTGCCTACGTGGGGCCGGGCTCGGAGGTGGGGAGG
GAGGGCAGCCAGCCTGCCGAGGGACGCCCAGGGAAGGAGGAAGACTTGGT
CGCTTTTAAGGTGCGATGAGGAGGGGAAGATTCGGTTAAGAGAGGAGTGG
TGGAGACGGGTCTCGGGGTACGGGGGTAGGGGAGGAGGTAGGTGATGGAG
AAGGAAGGGTGGGGCGAGCAGGACGAGGTGGATGATTCCTGCGCGGTGAT
GTGTTTTTGGAACGGAGAGGATAACGGCCAGTGTCGCAATGAGTGGTCTC
GTTCGTTTCCATCCTCGCTTTTAGCCCCCAGACGGAATGCGATCGTCCTG
CTACCGCTTTCCGGGACGAGTCTCTCACATCTGTCCTCCTTCCCGCCCTC
CTTCCCGCCCTCTTTCCCTTCCTGCCCCCCAGGAAGCGAACGCCTGCTTC
CAATTTTGGGCATCGGGTCGTCGTCATCTACCGCGAGGGATGGCTATTAC
CGTCGATTTACAGCCTCGACAAGACCTTCTGCACGTGCTGCGGGCGCGTG
TCTTGCCGGGGGAGGTAAGAGGGAGGGAGGGAGGAAGTGAAGGAGGAAGG
AAGAAGGGCGGGAGGGAAGAAAGAAAGAAAGGAGTTGCTCCAAAAATATG
ACGAGGGAGTCGTGCAATGAAAATGTGATTTAATCCCTCTCTCTCAACCA
TACTCCCCGTCCTTCCCTCCCTCCCTCCATCCCTCCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCAGGACAGCGTCACCTTGGAAGCAGGCC
TGAGCCCGGAGGACGTGCCCCCCATCATCCTCGCCCTCTCCCGGCGCCTC
CACCACCGTTCCCTCCACCTCCTCACCCCCGACCTCCTCCATCACACCTC
CCTCCTCCTTCTCCCCGTCCTCCTCCCCGACCTGGACACGGCCCATTTCG
TCGTCTACGCCGACAATGCGGCCCCGGTGCCCCTCGCCCTCCCTCCCCGC
CTCGCCCGGCGCCTGAACGAGCACAAGCACTTCTTCGACCACATCCATAT
CAGTGATCAAAACAGCACACCTGTGGGGTGAGGGAGGG
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Coding sequence (CDS) from alignment at CM002461.1:1051742..1053229-

>rna3720 ID=rna3720|Name=rna3720|organism=Nannochloropsis gaditana|type=CDS|length=2592bp|location=Sequence derived from alignment at CM002461.1:1051742..1053229- (Nannochloropsis gaditana)
GACAGCGTCACCTTGGAAGCAGGCCTGAGCCCGGAGGACGTGCCCCCCAT
CATCCTCGCCCTCTCCCGGCGCCTCCACCACCGTTCCCTCCACCTCCTCA
CCCCCGACCTCCTCCATCACACCTCCCTCCTCCTTCTCCCCGTCCTCCTC
CCCGACCTGGACACGGCCCATTTCGTCGTCTACGCCGACAATGCGGCCCC
GGTGCCCCTCGCCCTCCCTCCCCGCCTCGCCCGGCGCCTGAACGAGCACA
AGCACTTCTTCGACCACATCCATATCAGTGATCAAAACAGCACACCTGTG
GGGTGAGAAGCGAACGCCTGCTTCCAATTTTGGGCATCGGGTCGTCGTCA
TCTACCGCGAGGGATGGCTATTACCGTCGATTTACAGCCTCGACAAGACC
TTCTGCACGTGCTGCGGGCGCGTGTCTTGCCGGGGGAGATGCCGACGGCA
GCCTCCCCTCCCCCATTACGAGCATTACTCCTTCTCTTTTGGGGTGCGAT
CGGGATCCAATGCATGACTGCAGCCGCTCATGGCATCACAGATGATGAAG
TGGAGGACGAATTCTTGACGCCCGATCCCCCACCCCGTCCTTTTGCCACT
TTTTCCTGGCTGGGTCTTCCCTCCCGTGTCAGTCGCATTTCCATGTACGA
AATCTGCATGCTTCAAATATTGCTGTGCTTCCTGCTGCGTTTCCGATGGG
GCCGACGGGAGAATGAACGCATCAAGGCCCTGTTTTTGGAGCAATGTGCA
TCTCTGTTGTCGGAGCAATTTGCCTACGTGGGGCCGGGCTCGGAGGTGGG
GAGGGAGGGCAGCCAGCCTGCCGAGGGACGCCCAGGGAAGGAGGAAGACT
TGGTCGCTTTTAAGGACAGCGTCACCTTGGAAGCAGGCCTGAGCCCGGAG
GACGTGCCCCCCATCATCCTCGCCCTCTCCCGGCGCCTCCACCACCGTTC
CCTCCACCTCCTCACCCCCGACCTCCTCCATCACACCTCCCTCCTCCTTC
TCCCCGTCCTCCTCCCCGACCTGGACACGGCCCATTTCGTCGTCTACGCC
GACAATGCGGCCCCGGTGCCCCTCGCCCTCCCTCCCCGCCTCGCCCGGCG
CCTGAACGAGCACAAGCACTTCTTCGACCACATCCATATCAGTGATCAAA
ACAGCACACCTGTGGGGTGAGAAGCGAACGCCTGCTTCCAATTTTGGGCA
TCGGGTCGTCGTCATCTACCGCGAGGGATGGCTATTACCGTCGATTTACA
GCCTCGACAAGACCTTCTGCACGTGCTGCGGGCGCGTGTCTTGCCGGGGG
AGATGCCGACGGCAGCCTCCCCTCCCCCATTACGAGCATTACTCCTTCTC
TTTTGGGGTGCGATCGGGATCCAATGCATGACTGCAGCCGCTCATGGCAT
CACAGATGATGAAGTGGAGGACGAATTCTTGACGCCCGATCCCCCACCCC
GTCCTTTTGCCACTTTTTCCTGGCTGGGTCTTCCCTCCCGTGTCAGTCGC
ATTTCCATGTACGAAATCTGCATGCTTCAAATATTGCTGTGCTTCCTGCT
GCGTTTCCGATGGGGCCGACGGGAGAATGAACGCATCAAGGCCCTGTTTT
TGGAGCAATGTGCATCTCTGTTGTCGGAGCAATTTGCCTACGTGGGGCCG
GGCTCGGAGGTGGGGAGGGAGGGCAGCCAGCCTGCCGAGGGACGCCCAGG
GAAGGAGGAAGACTTGGTCGCTTTTAAGGACAGCGTCACCTTGGAAGCAG
GCCTGAGCCCGGAGGACGTGCCCCCCATCATCCTCGCCCTCTCCCGGCGC
CTCCACCACCGTTCCCTCCACCTCCTCACCCCCGACCTCCTCCATCACAC
CTCCCTCCTCCTTCTCCCCGTCCTCCTCCCCGACCTGGACACGGCCCATT
TCGTCGTCTACGCCGACAATGCGGCCCCGGTGCCCCTCGCCCTCCCTCCC
CGCCTCGCCCGGCGCCTGAACGAGCACAAGCACTTCTTCGACCACATCCA
TATCAGTGATCAAAACAGCACACCTGTGGGGTGAGAAGCGAACGCCTGCT
TCCAATTTTGGGCATCGGGTCGTCGTCATCTACCGCGAGGGATGGCTATT
ACCGTCGATTTACAGCCTCGACAAGACCTTCTGCACGTGCTGCGGGCGCG
TGTCTTGCCGGGGGAGATGCCGACGGCAGCCTCCCCTCCCCCATTACGAG
CATTACTCCTTCTCTTTTGGGGTGCGATCGGGATCCAATGCATGACTGCA
GCCGCTCATGGCATCACAGATGATGAAGTGGAGGACGAATTCTTGACGCC
CGATCCCCCACCCCGTCCTTTTGCCACTTTTTCCTGGCTGGGTCTTCCCT
CCCGTGTCAGTCGCATTTCCATGTACGAAATCTGCATGCTTCAAATATTG
CTGTGCTTCCTGCTGCGTTTCCGATGGGGCCGACGGGAGAATGAACGCAT
CAAGGCCCTGTTTTTGGAGCAATGTGCATCTCTGTTGTCGGAGCAATTTG
CCTACGTGGGGCCGGGCTCGGAGGTGGGGAGGGAGGGCAGCCAGCCTGCC
GAGGGACGCCCAGGGAAGGAGGAAGACTTGGTCGCTTTTAAG
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Synonyms
Publications