rna3719, rna3719 (mRNA) Nannochloropsis gaditana

Overview
Namerna3719
Unique Namerna3719
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length946
Alignment locationCM002461.1:1051130..1051604 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF1682
Orig transcript idgnl|cribi|Naga_101509g2.6328.mrna
Orig protein idgnl|cribi|Naga_101509g2.6328
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1051130..1051604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101509g2gene3583Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26964.1cds3710Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3719rna3719-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3719 ID=rna3719|Name=rna3719|organism=Nannochloropsis gaditana|type=mRNA|length=946bp
CCTCGCCGCTACTGCTAGTACTACTACGGTTTCTCACCTCTCCCTTTCCT
ATTCCCGCCGACCCCTCTTCAAGGTGTTCTCCTTCATCCGTAGCGCCGTG
AACGAGAGGGACGAAGAACAATGCCCATCCAGCTAAATCGGTGGGGGGGA
GTGCATAATGAGGAGGTGGACAGGAAGGCCATATTTGCTCTGAAAATCCT
GCTTCTGGTAGCGATCCCGACAGTCATGGCGTCGACGATCTTGGCCACCG
TCTACGCCTGGATCCAAGGCCGGCAGTATGGGTACACTGTTGAGGACTGG
CAACGCTGCTTGGTGTCCCCGAACAAGGGGGGGTTTGGCGTGGGTGATCA
AACGCTCTTTACGGGGTCTGCGGCCACCTTCGCGATGAAAGCTGTGGTTT
TTTTGATCTTGTCCTTCAACGGGGTCAACGCGGGGTTGATCGATCACGAC
ATGCTGCCCTACGCCCTATTTGTCTCCTTCTCCGGCCTGTTGGGGATGAC
GGTCTACCGCGAATCTTCTCCGATCCAACCAGAGCCTCGCGTCATGAGCG
CCACCCTGGTCACCTTGACCAAATTCATCCACCCCCGGATGTACGCTGAC
TTGCCCGCTTACCAAGGCCAGCCCGAACCTTCCCTTTGCACGCATGCCTT
CCATTTCAATCAAGCTTTCCTGGTGGTCCAGTACATGATGCTCTTGCTGG
GCGTGGGCTTGTTCTCCATCGCCGTCTACACGATCGCCTTCTCCCCCCGG
GACTATTTGGACGTGCGGTTGGCGGGCACCCGGGCCACCTTAACTTTGGT
GCCTGTGATCATGACCGGCTATCTCCTCACTCTCCTCGCGAAGGAGATCG
TGGCCGTGGAGACCATGCAGGTGCTGCAGGAGTCCCAGCTTGGCTACATG
TTCATGTTCAAAAAGGCCGACATGGGTATGTGTCCAGGCGTCCCGT
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protein sequence of rna3719

>rna3719-protein ID=rna3719-protein|Name=rna3719|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
PLPPSLLLPGRGHPYLPPVILRARFLLPTTATGMKAHLLPLLQLVFDLLD
HVAGGGVMLSEAARRRSKEVRAEIEAKKLRALQVAHQQEREWKRREKQRK
EEEALARSTPEAKRKKEEKEMKKKRRDAEKSRWPKTRIS
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mRNA from alignment at CM002461.1:1051130..1051604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3719 ID=rna3719|Name=rna3719|organism=Nannochloropsis gaditana|type=mRNA|length=475bp|location=Sequence derived from alignment at CM002461.1:1051130..1051604- (Nannochloropsis gaditana)
CCTCTTCCTCCCTCCCTCCTCCTCCCCGGCAGGGGGCATCCCTACCTCCC
TCCTGTCATTTTACGGGCCCGCTTCCTTCTCCCCACCACGGCCACGGGTA
TGAAGGCACACCTCTTACCCTTGCTTCAGTTGGTGTTTGACCTGCTCGAT
CATGTGGCGGGAGGGGGAGTGATGTTGTCGGAGGCGGCACGCAGAAGGAG
CAAGGAGGTCCGGGCGGAGATTGAAGCCAAGAAATTGAGAGCCTTGCAGG
TGGCGCATCAGCAAGAGAGGGAGTGGAAAAGAAGAGAAAAACAACGGAAA
GAAGAAGAGGCACTCGCACGGTCGACTCCGGAGGCAAAGCGGAAGAAGGA
AGAGAAGGAAATGAAGAAGAAAAGGAGGGACGCAGAAAAGTCACGCTGGC
CGAAGACCCGGATTAGTTAGATTATGACGTGCAATTAAGGCGAGGGTAAG
CCAAATAACCATAGCATGTACAAGT
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Coding sequence (CDS) from alignment at CM002461.1:1051130..1051604-

>rna3719 ID=rna3719|Name=rna3719|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at CM002461.1:1051130..1051604- (Nannochloropsis gaditana)
CCTCTTCCTCCCTCCCTCCTCCTCCCCGGCAGGGGGCATCCCTACCTCCC
TCCTGTCATTTTACGGGCCCGCTTCCTTCTCCCCACCACGGCCACGGGTA
TGAAGGCACACCTCTTACCCTTGCTTCAGTTGGTGTTTGACCTGCTCGAT
CATGTGGCGGGAGGGGGAGTGATGTTGTCGGAGGCGGCACGCAGAAGGAG
CAAGGAGGTCCGGGCGGAGATTGAAGCCAAGAAATTGAGAGCCTTGCAGG
TGGCGCATCAGCAAGAGAGGGAGTGGAAAAGAAGAGAAAAACAACGGAAA
GAAGAAGAGGCACTCGCACGGTCGACTCCGGAGGCAAAGCGGAAGAAGGA
AGAGAAGGAAATGAAGAAGAAAAGGAGGGACGCAGAAAAGTCACGCTGGC
CGAAGACCCGGATTAGTTAG
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Synonyms
Publications