EWM26964.1, cds3710 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26964.1
Unique Name	cds3710
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002461.1:1051185..1051604 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26964.1
Product	Protein of unknown function DUF1682
Partial	true
Orig transcript id	gnl\|cribi\|Naga_101509g2.6328.mrna
Gbkey	CDS
End range	.
End range	1051604

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1051185..1051604 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR012879	DUF1682

Homology

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BLAST of EWM26964.1 vs. NCBI_GenBank
Match: gi|585109124|gb|EWM26964.1| (Protein of unknown function DUF1682, partial [Nannochloropsis gaditana])

HSP 1 Score: 271.552 bits (693), Expect = 5.453e-92
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query:    1 PLPPSLLLPGRGHPYLPPVILRARFLLPTTATGMKAHLLPLLQLVFDLLDHVAGGGVMLSEAARRRSKEVRAEIEAKKLRALQVAHQQEREWKRREKQRKEEEALARSTPEAKRKKEEKEMKKKRRDAEKSRWPKTRIS 139
            PLPPSLLLPGRGHPYLPPVILRARFLLPTTATGMKAHLLPLLQLVFDLLDHVAGGGVMLSEAARRRSKEVRAEIEAKKLRALQVAHQQEREWKRREKQRKEEEALARSTPEAKRKKEEKEMKKKRRDAEKSRWPKTRIS
Sbjct:    1 PLPPSLLLPGRGHPYLPPVILRARFLLPTTATGMKAHLLPLLQLVFDLLDHVAGGGVMLSEAARRRSKEVRAEIEAKKLRALQVAHQQEREWKRREKQRKEEEALARSTPEAKRKKEEKEMKKKRRDAEKSRWPKTRIS 139

The following BLAST results are available for this feature:

BLAST of EWM26964.1 vs. NCBI_GenBank

BLAST of EWM26964.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585109124\|gb\|EWM26964.1\|	5.453e-92	100.00	Protein of unknown function DUF1682, partial [Nann...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3719	rna3719	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications