rna3718, rna3718 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3718
Unique Name	rna3718
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2343
Alignment location	CM002461.1:1049221..1050436 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101509g1.6327.mrna
Orig protein id	gnl\|cribi\|Naga_101509g1.6327
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1049221..1050436 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101509g1	gene3582	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3718	rna3718-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26963.1	cds3709	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:1049221..1050436-
coding sequence from alignment at CM002461.1:1049221..1050436-

mRNA sequence

>rna3718 ID=rna3718|Name=rna3718|organism=Nannochloropsis gaditana|type=mRNA|length=2343bp
AGCCTATTAAGAGCTTTGGCTGATTTTGAAACCCCTACCTCATGTTCATG
TTGCTATCTGCACAGGTACTGGGGGTGAGTTGGTGTGTTTTGGTCATGAA
ACGTTTGCTTTGCTGCAGGAGCGGGGGGAGCCGTGGAAGCACCGTGGCCT
GTCAGGTTTCCGCTTTAAAGCCAATTCCTGCGCGACAGCCCCTACCGCCG
TCGATCTCTGCTGCGGCCTTTGCGCGCTCCTCCTTCTTCCTCTCTTCTCT
CCCATCCCGCACTTTCACGACGAAATCTACCGATGAAGATCAGGTCAAGC
CTCCTCGGGCGACCGGTGGCAAGTACAAAGCAAGAGCCATGGGCAAACGA
TCGGCTGCCCTGACAGATTCAGGGATAGATGATGCCCTGGAGAAAGAATT
ACTCTATCTTGACACGTCGTCCCTGGTCCTACCCCCCGGAACGCAGACGG
AAGGGATGACTGTGGAGGAGATGCAGACGTTGGCGGACGCCTACGCCCTT
CAAATGCAAGAAAAAGCGAACCGGGAGGGGGACGTGGAGGAGGGCCATTA
CCCGGAAGTTACGTCGGAGCGGTTGGACCCTACCATGGTCTATGCCCCCT
CTGACGACCCTCGGCACCACGTGGAGGAGGGAGCGATGGGGAAAATTTAC
ACGCTGAGCGAGGAGGAAGTCAAGCGGTATTTCCCGGGGCCTTGGAGGCG
GCCTAGCCGCGTCCCCTGGCTCACGGACTTACAAGCCGTGCTGACCCGAC
GCTACCTGTTAGTACGGCCGCAGGCGGTGGAGGTGATGCAAGGATTGGGA
AGCTTCGCAGGAAAAGGGCGGGAGCAGGGTCGGTTCGGGGGCATGGAAAG
GGTGGAGGCCTTGCGGAACGACTGGGAGGAGAAAGGCGGGTTTGACGGGG
CCTTTGCGCGGGCTAAGAGGGGGGAAGGGGGGGAGGTCAGGCCGTCAGTG
GCACCGACGCCCCCTCTCGGGAAAGTTGCGGACGAAGAGGAACGTGGAGA
AGGGGAAGAAGGCGCGGTGGATGGGGAAAGGGTGGACGACGACGACGACG
ACGAATACGATTTGTTCGGTGGGGAGGAGGATGACGAGGAGAGGCTACGG
GCGGGGTTGGGGGGGGCCGACGGGGGAGGCTCTGCCTACGAGGCACGAAA
GACGGACTGGGACCAGTACGGGACTCTGAAGCAATTGGCCGTGGACGATT
CGTCCCTGGTCCATCCGGAGCAACGTTTGGAACTGCCCGTGCCGGCGGTG
CCGACCGAGGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGGTCCGGTCCAT
CTTTCTCCTGTCGGGCCCCAGGGGCTCGGGGAAGACCGCGACCTTGTACC
ATGCCGTCCATTACGCACGGCGGTCTGGTTGGGTGGTGTTTTTCGTCCCG
TCGGCCTTCGAATACCTTCACGAAGGGGGCTTGATCCGTCCTTCCCCTTT
CTATCGGGGCTACTTCGACACCCCCGACTTGGCGCAAACGACCTTGCGGC
AACTCGGCGAAGCGCACGGACATCAATTTGCCTCCCTGCCGTACACCGCG
CCTCGGGGTTTGGAAAGCTTGGAGTTGTCGGGCGAGTACACCTGCTGGGA
CCTGATGGCTTTGGGGTTGAGTCAGCGGAAATGGGCCACCACCTGCCTGC
TCGAGTTGAAACGGGCCTTGGAGAACCAGGACGCGTACCCGGTGCTCTTC
GCGGTGGACGAGGTCTCGGAATGGTTCTACCCTTCCTCGTATTTCTACGC
GCGGAAAAAAATCGAGGCTTCCCGCTTGGCAGTGGTGGCCTCCCTCCGAG
GCCTCCTCCCCTTCCCTCCCTCCGGCCCAGGGTACGGGAAACATCACCAA
CGTTTTGCTTTCTTGGCGGCATATTCCCATCGGTACCCGCGGCGTTCCTA
CAAAAAAGCCAGCAAGGGAGCCGAAGGACGAAAACGACGCGGAGACCTTC
CCCCTTATCCCCTCCCCCGCTTCCTCGCACCCTACGACGTGCCCCTACCC
CCTACCTATTCCCCCACTGAATTCCAAGTTTTGTACAACTTTGTCGCCGA
TCAGGGGCTCTGGGGACCTCAACCGTCCTTCACCAGCGCCGCCCTGCGAC
AGGCTCGGATGATCTCGGCGGGACATCCGGGTACCTTTGCGAAGGACGCG
GTGGTTTTGGAACGTCGACTGTTTGCTCCGCAAAACCGGGTGGGGAAAGC
CTCGGCATGCGCACCCGCCAATTTCATGCTGGCGGATCTGTTGGAGGACG
AGGAAGCGGGGGAGGGAGGGGCGGAGGGAGGGGAGGAGCACCGAGCTTCC
GATGCGCAGCATGTGGCCCAGCAGATGTGAGGGAGGGACGGAG

protein sequence of rna3718

>rna3718-protein ID=rna3718-protein|Name=rna3718|organism=Nannochloropsis gaditana|type=polypeptide|length=275bp
MPIQLNRWGGVHNEEVDRKAIFALKILLLVAIPTVMASTILATVYAWIQG
RQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFN
GVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLT
KFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLFSI
AVYTIAFSPRDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQ
VLQESQLGYMFMFKKADMGMCPGVP

mRNA from alignment at CM002461.1:1049221..1050436-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3718 ID=rna3718|Name=rna3718|organism=Nannochloropsis gaditana|type=mRNA|length=1216bp|location=Sequence derived from alignment at CM002461.1:1049221..1050436- (Nannochloropsis gaditana)
CCTCGCCGCTACTGCTAGTACTACTACGGTTTCTCACCTCTCCCTTTCCT
ATTCCCGCCGACCCCTCTTCAAGGTGTTCTCCTTCATCCGTAGCGCCGTG
AACGAGAGGGACGAAGAACAATGCCCATCCAGCTAAATCGGTGGGGGGGA
GTGCATAATGAGGAGGTGGACAGGAAGGCCATATTTGCTCTGAAAATCCT
GCTTCTGGTAGCGATCCCGACAGTCATGGCGTCGACGATCTTGGCCACCG
TCTACGCCTGGATCCAAGGCCGGCAGTATGGGTACACTGTTGAGGACTGG
CAACGCTGCTTGGTGTCCCCGAACAAGGGGGGGTTTGGCGTGGGTGATCA
AACGCTCTTTACGGGGTCTGCGGTACGAGCTCCCGGCACGGCCCGGGCCC
TCTCATAAGGGTTCCGTCGTCCCTGGTCCCTCACCATCCACTCCTGCACT
TTCCTTTCCTTCCACACGCCAGGCCACCTTCGCGATGAAAGCTGTGGTTT
TTTTGATCTTGTCCTTCAACGGGGTCAACGCGGGGTTGATCGATCACGAC
ATGCTGCCCTACGCCCTATTTGTCTCCTTCTCCGGCCTGTTGGGGATGAC
GGTCTACCGCGAATCTTCTCCGATCCAACCAGAGCCTCGCGTCATGAGCG
CCACCCTGGTCACCTTGACCAAATTCATCCACCCCCGGATGTACGCTGAC
TTGCCCGCTTACCAAGGCCAGCCCGAACCTTCCCTTTGCACGCATGCCTT
CCATTTCAATCAAGCTTTCCTGGTGGTCCAGTACATGATGCTCTTGCTGG
GCGTGGGCTTGTTCTCCATCGCCGTCTACACGATCGCCTTCTCCCCCCGG
GACTATTTGGACGTGCGGTTGGCGGGCACCCGGGCCACCTTAACTTTGGT
GCCTGTGATCATGACCGGCTATCTCCTCACTCTCCTCGCGAAGGAGATCG
TGGCCGTGGAGACCATGCAGGTAGCGAGGGAGGGCGGGGGGGAGGGGCAA
GTGCGCAACAAGCCGGGGCCTCTTTTATTTATACCATCTCCTGCCCTCCC
TCCCTCCCGCCCTCCCTCCCGCCCTCCCGCCCTCGCTCCCTCCCTCCTCC
CACCCCTCGCCTTCCCTCCTGGCTCCCGGGCGCCCTCCAGGTGCTGCAGG
AGTCCCAGCTTGGCTACATGTTCATGTTCAAAAAGGCCGACATGGGTATG
TGTCCAGGCGTCCCGT

Coding sequence (CDS) from alignment at CM002461.1:1049221..1050436-

>rna3718 ID=rna3718|Name=rna3718|organism=Nannochloropsis gaditana|type=CDS|length=2478bp|location=Sequence derived from alignment at CM002461.1:1049221..1050436- (Nannochloropsis gaditana)
GTGCTGCAGGAGTCCCAGCTTGGCTACATGTTCATGTTCAAAAAGGCCGA
CATGGGTATGTGTCCAGGCGTCCCGTGCCACCTTCGCGATGAAAGCTGTG
GTTTTTTTGATCTTGTCCTTCAACGGGGTCAACGCGGGGTTGATCGATCA
CGACATGCTGCCCTACGCCCTATTTGTCTCCTTCTCCGGCCTGTTGGGGA
TGACGGTCTACCGCGAATCTTCTCCGATCCAACCAGAGCCTCGCGTCATG
AGCGCCACCCTGGTCACCTTGACCAAATTCATCCACCCCCGGATGTACGC
TGACTTGCCCGCTTACCAAGGCCAGCCCGAACCTTCCCTTTGCACGCATG
CCTTCCATTTCAATCAAGCTTTCCTGGTGGTCCAGTACATGATGCTCTTG
CTGGGCGTGGGCTTGTTCTCCATCGCCGTCTACACGATCGCCTTCTCCCC
CCGGGACTATTTGGACGTGCGGTTGGCGGGCACCCGGGCCACCTTAACTT
TGGTGCCTGTGATCATGACCGGCTATCTCCTCACTCTCCTCGCGAAGGAG
ATCGTGGCCGTGGAGACCATGCAGATGCCCATCCAGCTAAATCGGTGGGG
GGGAGTGCATAATGAGGAGGTGGACAGGAAGGCCATATTTGCTCTGAAAA
TCCTGCTTCTGGTAGCGATCCCGACAGTCATGGCGTCGACGATCTTGGCC
ACCGTCTACGCCTGGATCCAAGGCCGGCAGTATGGGTACACTGTTGAGGA
CTGGCAACGCTGCTTGGTGTCCCCGAACAAGGGGGGGTTTGGCGTGGGTG
ATCAAACGCTCTTTACGGGGTCTGCGGTGCTGCAGGAGTCCCAGCTTGGC
TACATGTTCATGTTCAAAAAGGCCGACATGGGTATGTGTCCAGGCGTCCC
GTGCCACCTTCGCGATGAAAGCTGTGGTTTTTTTGATCTTGTCCTTCAAC
GGGGTCAACGCGGGGTTGATCGATCACGACATGCTGCCCTACGCCCTATT
TGTCTCCTTCTCCGGCCTGTTGGGGATGACGGTCTACCGCGAATCTTCTC
CGATCCAACCAGAGCCTCGCGTCATGAGCGCCACCCTGGTCACCTTGACC
AAATTCATCCACCCCCGGATGTACGCTGACTTGCCCGCTTACCAAGGCCA
GCCCGAACCTTCCCTTTGCACGCATGCCTTCCATTTCAATCAAGCTTTCC
TGGTGGTCCAGTACATGATGCTCTTGCTGGGCGTGGGCTTGTTCTCCATC
GCCGTCTACACGATCGCCTTCTCCCCCCGGGACTATTTGGACGTGCGGTT
GGCGGGCACCCGGGCCACCTTAACTTTGGTGCCTGTGATCATGACCGGCT
ATCTCCTCACTCTCCTCGCGAAGGAGATCGTGGCCGTGGAGACCATGCAG
ATGCCCATCCAGCTAAATCGGTGGGGGGGAGTGCATAATGAGGAGGTGGA
CAGGAAGGCCATATTTGCTCTGAAAATCCTGCTTCTGGTAGCGATCCCGA
CAGTCATGGCGTCGACGATCTTGGCCACCGTCTACGCCTGGATCCAAGGC
CGGCAGTATGGGTACACTGTTGAGGACTGGCAACGCTGCTTGGTGTCCCC
GAACAAGGGGGGGTTTGGCGTGGGTGATCAAACGCTCTTTACGGGGTCTG
CGGTGCTGCAGGAGTCCCAGCTTGGCTACATGTTCATGTTCAAAAAGGCC
GACATGGGTATGTGTCCAGGCGTCCCGTGCCACCTTCGCGATGAAAGCTG
TGGTTTTTTTGATCTTGTCCTTCAACGGGGTCAACGCGGGGTTGATCGAT
CACGACATGCTGCCCTACGCCCTATTTGTCTCCTTCTCCGGCCTGTTGGG
GATGACGGTCTACCGCGAATCTTCTCCGATCCAACCAGAGCCTCGCGTCA
TGAGCGCCACCCTGGTCACCTTGACCAAATTCATCCACCCCCGGATGTAC
GCTGACTTGCCCGCTTACCAAGGCCAGCCCGAACCTTCCCTTTGCACGCA
TGCCTTCCATTTCAATCAAGCTTTCCTGGTGGTCCAGTACATGATGCTCT
TGCTGGGCGTGGGCTTGTTCTCCATCGCCGTCTACACGATCGCCTTCTCC
CCCCGGGACTATTTGGACGTGCGGTTGGCGGGCACCCGGGCCACCTTAAC
TTTGGTGCCTGTGATCATGACCGGCTATCTCCTCACTCTCCTCGCGAAGG
AGATCGTGGCCGTGGAGACCATGCAGATGCCCATCCAGCTAAATCGGTGG
GGGGGAGTGCATAATGAGGAGGTGGACAGGAAGGCCATATTTGCTCTGAA
AATCCTGCTTCTGGTAGCGATCCCGACAGTCATGGCGTCGACGATCTTGG
CCACCGTCTACGCCTGGATCCAAGGCCGGCAGTATGGGTACACTGTTGAG
GACTGGCAACGCTGCTTGGTGTCCCCGAACAAGGGGGGGTTTGGCGTGGG
TGATCAAACGCTCTTTACGGGGTCTGCG

Synonyms

Publications