EWM26963.1, cds3709 (CDS) Nannochloropsis gaditana

Overview
NameEWM26963.1
Unique Namecds3709
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1050065..1050316 -
Alignment locationCM002461.1:1049467..1049964 -
Alignment locationCM002461.1:1049221..1049296 -

Link to JBrowse

Properties
Property NameValue
Start range1049221
Start range.
Protein idEWM26963.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101509g1.6327.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1050065..1050316 -
CM002461.1supercontigCM002461.1:1049467..1049964 -
CM002461.1supercontigCM002461.1:1049221..1049296 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26963.1 vs. NCBI_GenBank
Match: gi|585109123|gb|EWM26963.1| (hypothetical protein Naga_101509g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
Query:    1 MPIQLNRWGGVHNEEVDRKAIFALKILLLVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLFSIAVYTIAFSPRDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKKADMGMCPGVP 275
            MPIQLNRWGGVHNEEVDRKAIFALKILLLVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLFSIAVYTIAFSPRDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKKADMGMCPGVP
Sbjct:    1 MPIQLNRWGGVHNEEVDRKAIFALKILLLVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLFSIAVYTIAFSPRDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKKADMGMCPGVP 275          
BLAST of EWM26963.1 vs. NCBI_GenBank
Match: gi|585108060|gb|EWM26072.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 178.718 bits (452), Expect = 1.183e-49
Identity = 100/266 (37.59%), Postives = 155/266 (58.27%), Query Frame = 0
Query:   15 EVDRKAIFALKILLLVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKG----GFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLF------SIAVYTIAFSPRDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKKADMGM 270
            ++  +++ AL+IL +V IP  + +   A VYAWI   QY YT +DWQRCLV PN+     G    D+T +  +AA++A +  VF+I+ F     G+ D D+LPY+LF +   +LG+ VYRE+ PIQP+P+ +SATL+TL K+I P MY+  PA   +  P+ C+ A+  N+ FL+ Q ++++L   +F      ++A Y I    R     +L      L L+ +   GY+    AKE VA  T+ VL ES+L  +F F K ++ +
Sbjct:   56 QIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYS-FPA-AAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWR----FQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDI 315          
BLAST of EWM26963.1 vs. NCBI_GenBank
Match: gi|585108059|gb|EWM26071.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 178.333 bits (451), Expect = 1.094e-48
Identity = 100/266 (37.59%), Postives = 155/266 (58.27%), Query Frame = 0
Query:   15 EVDRKAIFALKILLLVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKG----GFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLF------SIAVYTIAFSPRDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKKADMGM 270
            ++  +++ AL+IL +V IP  + +   A VYAWI   QY YT +DWQRCLV PN+     G    D+T +  +AA++A +  VF+I+ F     G+ D D+LPY+LF +   +LG+ VYRE+ PIQP+P+ +SATL+TL K+I P MY+  PA   +  P+ C+ A+  N+ FL+ Q ++++L   +F      ++A Y I    R     +L      L L+ +   GY+    AKE VA  T+ VL ES+L  +F F K ++ +
Sbjct:   56 QIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYS-FPA-AAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWR----FQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDI 315          
BLAST of EWM26963.1 vs. NCBI_GenBank
Match: gi|553182461|ref|XP_005853731.1| (hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526] >gi|553186167|ref|XP_005854371.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422294686|gb|EKU21986.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422295328|gb|EKU22627.1| hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 152.525 bits (384), Expect = 3.593e-40
Identity = 76/183 (41.53%), Postives = 118/183 (64.48%), Query Frame = 0
Query:   15 EVDRKAIFALKILLLVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKG----GFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLL 193
            ++  +++ AL+IL +V IP  + +   A VYAWI   QY YT +DWQRCLV PN+     G    D+T +  +AA++A +  VF+I+ F     G+ D D+LPY+LF +   +LG+ VYRE+ PIQP+P+ +SATL+TL K+I P MY+  PA   +  P+ C+ A+  N+ FL+ Q ++++L
Sbjct:   56 QIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANMMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYS-FPA-AAKWAPASCSLAYALNKWFLIFQILVVVL 236          
BLAST of EWM26963.1 vs. NCBI_GenBank
Match: gi|585105799|gb|EWM24397.1| (hypothetical protein Naga_100283g1 [Nannochloropsis gaditana])

HSP 1 Score: 106.686 bits (265), Expect = 8.841e-25
Identity = 58/155 (37.42%), Postives = 88/155 (56.77%), Query Frame = 0
Query:    4 QLNRWGGVHNEEVDRKAIFALKILL-LVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRM 157
            +L R       +  ++++  L+I+  L+  P  + S I   +YA I  R+  Y  EDW +CL  PN G   + D   F  SA+ FA +A + L+++  G+  GL D+D L ++ F    GLLG+T+YRES P   +P  MS TL TL+K+IHPR+
Sbjct:   21 ELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHL-DNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174          
BLAST of EWM26963.1 vs. NCBI_GenBank
Match: gi|585102066|gb|EWM21737.1| (hypothetical protein Naga_100270g4 [Nannochloropsis gaditana])

HSP 1 Score: 110.538 bits (275), Expect = 9.732e-24
Identity = 82/251 (32.67%), Postives = 123/251 (49.00%), Query Frame = 0
Query:   24 LKILLLVAIPTVMASTILATVYAWI--QGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLFSI-----AVYTIAFSPRD--YLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKK 265
            L+ L  V +P  + ++I A +Y WI      Y      WQRC+V  N        Q  F  SA+ F     +F+ L F     GL D D+LPY+L V+   LLG  VYR  +P+ P    ++ TL++L  F+ P MYAD+P   G      C HA   N +FL   ++++L      ++     A Y     PR   YL   L   R  L LV + +  Y++T+ AKE  A++T+ +L +   GY+F F++
Sbjct:  126 LRKLFYVVMPLSIVASIYACLYGWIFVNTPTYLQDPTSWQRCIVY-NTNNANATPQN-FAVSASAFGGMMFIFMGLGFKAGYLGLQDMDLLPYSLTVTCYTLLGQLVYRPVNPVVPAITELTPTLISLASFLRPGMYADVPDAAGA-----CQHARRVNVSFLA--FVLVLFAANFCNLLLLLYATYRTRRVPRSSRYL---LVWHRPALCLVGLAIAAYIVTIAAKEDAALKTLFLLDKVGHGYLFPFQR 364          
BLAST of EWM26963.1 vs. NCBI_GenBank
Match: gi|553190289|ref|XP_005855162.1| (hypothetical protein NGA_0147800, partial [Nannochloropsis gaditana CCMP526] >gi|422293903|gb|EKU21203.1| hypothetical protein NGA_0147800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 87.8113 bits (216), Expect = 2.571e-16
Identity = 61/180 (33.89%), Postives = 94/180 (52.22%), Query Frame = 0
Query:   93 VFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLFSI-----AVYTIAFSPRD--YLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKK 265
            +F+ L F     GL D D+LPY+L V+   LLG  VYR  +P+ P    ++ TL++L  F+ P MYAD+P   G      C HA   N +FL   ++++L      ++     A Y     PR   YL   L   R  L LV + +  Y++T+ AKE  A++T+ +L +   GY+F F++
Sbjct:    3 IFMGLGFKAGYLGLQDMDLLPYSLTVTCYTLLGQLVYRPVNPVVPAITELTPTLISLASFLRPGMYADVPDAAGA-----CQHARRVNVSFLA--FVLVLFAANFCNLLLLLYATYRTRRVPRSSRYL---LVWHRPALCLVGLAIAAYIVTIAAKEDAALKTLFLLDKVGHGYLFPFQR 172          
The following BLAST results are available for this feature:
BLAST of EWM26963.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585109123|gb|EWM26963.1|0.000e+0100.00hypothetical protein Naga_101509g1, partial [Nanno... [more]
gi|585108060|gb|EWM26072.1|1.183e-4937.59hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
gi|585108059|gb|EWM26071.1|1.094e-4837.59hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
gi|553182461|ref|XP_005853731.1|3.593e-4041.53hypothetical protein NGA_0163502 [Nannochloropsis ... [more]
gi|585105799|gb|EWM24397.1|8.841e-2537.42hypothetical protein Naga_100283g1 [Nannochloropsi... [more]
gi|585102066|gb|EWM21737.1|9.732e-2432.67hypothetical protein Naga_100270g4 [Nannochloropsi... [more]
gi|553190289|ref|XP_005855162.1|2.571e-1633.89hypothetical protein NGA_0147800, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3718rna3718Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications