rna3710, rna3710 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3710
Unique Name	rna3710
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3801
Alignment location	CM002461.1:1028819..1031013 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100127g24.6204.mrna
Orig protein id	gnl\|cribi\|Naga_100127g24.6204
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1028819..1031013 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100127g24	gene3574	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3710	rna3710-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26972.1	cds3701	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:1028819..1031013+
coding sequence from alignment at CM002461.1:1028819..1031013+

mRNA sequence

>rna3710 ID=rna3710|Name=rna3710|organism=Nannochloropsis gaditana|type=mRNA|length=3801bp
GAATTCGTTGTCTTAAGTCAACTCGTCCCTCTCCTTGAGTGCACTAGTTT
GGAACTCGCGCATAACATCCTGTGATCCCTGGAAACAAGTTGAGGTCGCC
TCGATGACCTTATTCTACTACATTTACACAGCGCAAGACCTGAAGTCCAT
CTCCTCGAAGAGCTGTCTAGCAAAAATGAGCATCGCTTTTTCGGTCACTG
GTGGGCAACTGCCTTCATCTGCCGATATTTCGGTACTTACGTGTGCCTAG
ACCACACGAGTGATCTTGGAGAAATGAGCGAACGAGACACCAGCAGGCAC
CTACACATGCAATACGCATCGATTCTTCGATATGTTCGTGTCCATCTTTT
CGTGTCGTGTTACGCCGCGTTTCTTTGAGCCGTGTAGCGCATGGGGCAAA
AGTCGCGGGATAAATGCGCTTTAGGATTTCGTCGGTCAATCACGGTTCTA
CGGAGACACGAGCACAGAGATTCACCATGCCTTAGGAGTGTCAACAGACC
CTTGAAAACCAACAGAACGCTGCAGGGACTTTTCGAACGTGGTGGTGTAC
GAAAATTTTCTGATATTGCCGCAGTAAAACTACTGTAGAAATGCCAAAAT
AAATACGTAAGTAGGCTTAATTCTGTGGGACCTTCTGATGGTTGCCAACA
ATATCGCTCGGACGGCACAGTCGCCAGCCTGCCCAAACACTTGCCCTTCT
ATTAAGTTTTTCGGGGTGGAAGACCATATAAAATGAAAAATTGTCCATTC
ATGACTTTCACTTCGAGTGGAAAAACTTTTTTGTGTTGTGAAAGAGTGTC
ACCACACAGCCATGAATCGGTCGCAGCCGGGTTTCCCCTCTTTTTCTTAG
CAGTCACAGACGGTGACGACCGTTTCGAAGTACCATCAGCTTCTTTAATT
GAAACGCGCTTTAAGTTTGTGAAAGCTTCTGGTATATTATGGAAATATAA
AATTATATGTACCTTGACTGAGTATAGCTGAAATGTATGGCTGCCTTTTC
GTAAAACACGTTTTGCACGCCCCAAAAAAATAAGAGAAGGTCCGTCTGGT
CGGCGGCCCCCTTGCCCCATGACAAGTTTTTAAAACTCATAAAAGAACAA
CGCGGCCTCAGCGACTTGAAACCTCTGTTCCGATGAAATATGATACATGT
GTTGACTTGTGCGGTCGTTGCCGCTATGTATGTAGCCGTGGGACGGCCTC
CGACGGCCTCAGCACCAGATGTAATGACCGATGGGAACGGGGGCGACATG
CAACTTGGTACGGAGAAATTACACAGCGATTCTTGAATCGAAAGGACTGA
TAAACGGCTGCTGTGATACCTTGAACAATCACATATGGACAACAGGGCGG
AACCGCGCTCGAAGCGCGTGTATAGACACACACAAAAGGATGTCTGGAGC
ATACAAGCCTGCACCCGCCGCCGGGTTCTGAGTGGCCTTCATAACAGTGG
TATGGCCGGAGAAGGCGGGATTGATGGACTTGACGAACAAATCAAATCCA
AAGAAGTGCACGCAGTCTCCATGCGTCATTCCGCATCAGTCCACCCCACT
TGCGGCGGCGGAGTCCAGGGGTCGTACTGCATGACGTTGATCGAGCATTT
CGTCCGAGGCCATGTCGTGCTTGCCCGTGCACGAAGTCTCTTGCACGCTT
GGCACCTCCTGAACAGCCAACACCCCGGGCAGGACTTTACCAACGGCCAC
CTCCATGTGCTTTCCTTCATCATAGGGATCAATCCCTCCGAGCTCCCCCG
CTCTCCCTTGAGTATCTGGCCTGGTCCTCTCTCCCCTCTCCGCTTGCGGC
TTCCTGGAAAACCGGAGGGCCTCGACACGGAAGCTGGACGGCTAGAGGTG
GACGACGAGCCTGCCTTCCCCCCCTCCACGCTCACGGACCGAGAAAAATC
GGAAGGTTCCTTTCAAGACGATGGAGAGGGACACCGGGCGTGGGACGGGG
GAGACTTTTGGTGGGACGGGGGCCGGGACGGAGGGGCTTCGGCCGGGGGG
GGGAGGACAGACGTGAGGATAGGCGACCTCCAAGAGGTCTTCGGGCGCGC
AATCTATAAGAACCAAGAGGATGTAGTCCCTAACCATGATGCAGGGCAGT
CGGGATGGGGAGGACTGGGCGATATGGAGGAAGGAGGGCAGCAAGGGACA
GAAGACGGAAGCCGGAGAAGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGG
AGGAGGAGAAGAGGACGCGGTCGAGGGCCGGAAGGAGGAAAGGAATCCTG
ATCATAGCGCTCTGACTCCCCATGCTCTGAAGGAGCCATGCCCCAAACAG
GACGGTCGTTCCTGCAACCCCTCTTCCCTTTCCCCAAACCTGCGTCGAAA
ACGCTGCCGTCTGTCCCCTTTGGCCACTCCCCTCGCGACTTCGCCCTCGC
ACCACCTAACCCCTGGGATCCCCGCCCCCATGCTCGACTTGAGGGCCTCC
ACGGGCGGAGCCATGGCGTACCTGGAACCTTCCCCCCCCTCGCTACTCCC
ACAGCCACACATGCAATCTAAGTCTCCGCCCCCGTGCAGGGCAGTCCCGC
CACCGTCACGCCACGCACAGGGGGGAACGGCCGGTCGTGCCGGGCGAGGA
CAGGAGGAAGAAAGTCGGGGACCAAGAGAAAGGAAGGAGGGGCAAGAGGA
AGAGGAAGGCGAAAGGAAGGTGGAGGGGTTTGGGGAGGCGGGGGGTCCTG
CGGGGGGGCGAGGAGGCAGGGAGCCCCAAGAGGTGGAGACGGAGATTTAT
GCGGGAGGAAGGGAAGGGAAAGGAAGGTGGGCGCAGAACAATCGGTTGCC
TTCCCCGGAAGCCAACGCCGTGATGGCGCGTTGTGGAATCTTTTGGTCCC
TCCCGACGGAGGAAGAGGGTGGGAGGGAAGGGGCTTGCCTGGAGGTCGTG
TGCGACAAGTCGTTTGCGGCGATTTTTTTGACGGAGGAGGAGCTGCGGAT
CGATATGGCTGAGAAGGGATGGGGCGTGGATGTACTCTGGGAGAGCATCA
TCGCACCCGAATCCCTCCCCACTTATTATGAGGGCTTGATCGAATCCGGA
TTCTGTGTACCTCCTGGACAGGTGGGCTGTTCGAGGAAGGTTCTTAAGAT
GCTGGGCAAGGCCGACTTCGATGTGAGGAGTCTGGAAGATAACCGAGCGA
CTGGCAATGCGGACGGAGCGCAACCGGCCAGGAAACGTCTCCGCCGCGTC
CTCCTCCCTGAAGAGCATGAAGCCTTCATCACTACTTACGTGTCAGAAAA
TGGGCGTCACTGGGCTTTCACCCTGGACGTTATCCCACTCTTGTCGGGGG
AGGACGAAGACGAAGACGAGGAGACGAAACCGGACGAGCAAGATGCAGTC
CTTGGCGTCCGGGACCTCCATATGCCTCCGGTGACACGCTTTTTGAATAG
TAGAGGGTGTCTCGGGGACTTCGAGGGGGTAGACATGGACATGTCTTCAA
ACATTTCCTCCTTACCCACCTCACCCATGGTGGGCCCGGAGGATAGGGAG
GATGTTGCATTCAACTGAATTATACCCTTCGAGGATTGTATATTTCAGAA
TTGGTCGTCGAGAAAGAATGTACTAGTCAGTCGTGTGGAAGAGGGCGGAC
AGAAACTCGATGGCACAAATGTGACGTCACTGTGTTGCACTTTTTCCTGA
CCCCGAAGTTTTGAATGAGCGCGGTCCAAAATCCGAAGAATAGAGTCATG
AAATGAAAGCTAACTGAGTTCAAAAGCTTTGTATCGGAAGTAAAAAAGGA
ATGTACGATGGACCAGCTACTCGCTCTCAAGAATTTTTCGCGTCATATGG
A

protein sequence of rna3710

>rna3710-protein ID=rna3710-protein|Name=rna3710|organism=Nannochloropsis gaditana|type=polypeptide|length=604bp
MESSAKKRRCCTIPALARVGNPPQPPLTAPTKAANTSAPAPFMFSFYRES
ETGHQDSKAALFHTSGSATTNTAGPSSIFASRLVQERKASRISTRHALLR
RTAKQDPHTATDPLALQSEERVRVLWEASSNSSNIKVRRLNGEVVRVTST
DLSPLARAPDAHFSRPTENSEEENRLVCHIDLLFDDVTPGAHGNKLSPTP
PQIDTSLASLIYPLTPEYFLKEIWNQKALVIQAGAGRLKKMCRNLDPIGV
LPSSNRRKRPRPLSAPASRPPSLPFSTLHLRVSRLLESAHRIVVWMKTRT
RHKGGRGNRTSRRAEQETSPHGRRTAKKGKCGDEEGGRGWDDVIPGQRQT
TEPRPPSRENRRTQASCPPRPSRGRGGGEGLALPSLPLPPRTTFNTWTRY
LPLSRRPVTRQGTPSTSTRPGGRNGPIFGRSPETWGFSPATVWEGGREGG
REEGREGGKGEGTWRSLPCAPPHRTPFHWDSQHNFTVQIRGRKRWTVQNS
NVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSP
ASFVLRPGAVLYLPPGWWHAVEALTDEEGGEEEGEEVEVEEEEEEEEEEE
ECIL

mRNA from alignment at CM002461.1:1028819..1031013+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3710 ID=rna3710|Name=rna3710|organism=Nannochloropsis gaditana|type=mRNA|length=2195bp|location=Sequence derived from alignment at CM002461.1:1028819..1031013+ (Nannochloropsis gaditana)
ACAGAAATTGCTGGAAGAGCCGGTTCTCCCACACGGAGACAAGTCTTTTT
GGCCTCTTcccgaaggagaagggataGAACGCCTGGGGGCCACGACAAGG
ACTGTAATTGCTAGCCTTGTAGCCTTTCATAGCAAGATTAAATGCTGTAA
TTTTGGTCATCAAGGATGGCATGTCACTTTCATGTGAATAGGCGGCATGA
ATTTTGGTGGTATTCCTGACTTGCAAGCTCCTTGTGTTTCGTGCGAtttt
cgcgcgctttttcGCAAAGTCTAGGTCCTGACCCGCCCAAGATCAAGGAG
AATTGCACGATCTTCGGTCCAGGGCATAAAAAATGTAAAAGTGGGGTTCT
AATCAACTCAATCTTAAATATATTCGAAGGATGGAAAGCTCGGCCAAGAA
GCGCAGATGTTGCACGATACCCGCCTTGGCACGGGTTGGAAACCCTCCac
aacctcccctcaccGCTCCAACAAAAGCTGCAAACACCTCTGCGCCGGCG
CCATTCATGTTCAGCTTCTATAGAGAATCCGAGACCGGCCATCAAGATAG
CAAGGCTGCTCTCTTTCATACATCAGGCAGCGCGACTACAAATACCGCCG
GCCCTTCGTCTATTTTTGCCTCCCGGCTTGTACAGGAACGCAAAGCGAGT
CGTATCTCCACGCGACATGCCCTGTTGCGTCGCACGGCCAAGCAAGATCC
ACATACTGCTACGGATCCTCTGGCACTGCAATCGGAGGAACGGGTACGAG
TATTGTGGGAGGCAAGTAGCAATTCTAGCAACATCAAAGTCCGTCGCTTG
AACGGAGAGGTTGTGCGGGTGACATCAACCGACCTCAGCCCCCTCGCACG
CGCCCCAGACGCTCACTTTTCGAGGCCAACAGAGAAcagcgaagaggaaa
ataGATTGGTGTGTCATATTGATCTTCTTTTCGACGACGTCACGCCTGGT
GCGCATGGGAACAAGCTTAGCCCTACCCCCCCCCAAATTGACACAAGCCT
GGCCAGCCTCATTTATCCTCTGACGCCCGAGTATTTCTTAAAGGAAATCT
GGAACCAAAAGGCTCTCGTCATTCAAGCTGGAGCTGGACGGCTTAAAAAA
ATGTGTCGGAACTTGGATCCCATCGGCGTCTTGCCCTCATCGAATCGTCG
GAaacgtccccgtcctctctcggcccctgcctcccgccctccctccctcc
ctttctccaccttGCATTTGCGGGTATCGCGGCTCTTGGAGAGTGCCCAT
CGAATCGTTGTCTGGATGAAAACCAGGACCCGGCACAAAGGAGGTCGTGG
CAATCGGACGAGTCGCAGGGCTGAGCAAGAGACCAGCCCCCACGGCCGCA
GGaccgccaagaaagggaaatgcggcgatgaggagggagggcgtggttgG
GATGACGTCATCCCAGGCCAGAGGCAGACGACCGAGcctcggcctccttc
ccgcgaGAACCGCCGGACGCaagcctcctgccccccccggccctccaggg
ggaggggggggggagaagggctcgcgctcccctccctccctctcccccca
cggACGACATTCAATACTTGGACCAGGTACCTCCCTCTGTCGCGGAGGCC
TGTCACAAGGCAGGGCACTCCCTCTACTTCAACCCGCCCTGGGGGACGCA
ACGGCCCTATCTTCGGACGCTCTCCCGAGACCTGGGGCTTCTCCCCGGCG
ACggtctgggagggagggagggagggagggagggaggaggggagggaggg
gggaaagggggaggggacatgGAGGTCTTTGCcgtgcgcccccccccatc
gtACTCCCTTCCATTGGGACTCCCAGCACAATTTTACGGTCCAGATCCGA
GGCCGAAAACGGTGGACCGTTCAAAATTCCAATGTAAATGAGCCGTTGAG
CAACCaccatccttcctcatccaaccgtcgggcgagggcgggggacaCCG
CCCTTCACATGGCCTGTGGGATGCCTGTAGAAGCTCTTCAGGCACCCAGT
TTccacggccctccctcctcctcctcccccgcatCGTTTGTCCTGCGGCC
GGGGGCGGTGCTCTACCTTCCCCCGGGCTGGTGGCATGCGGTGGAGGCTT
Tgacggatgaggagggaggggaggaggaaggggaagaggtggaggtagag
gaggaggaggaggaggaggaggaagaggaggagtgcaTTCTGTGA

Coding sequence (CDS) from alignment at CM002461.1:1028819..1031013+

>rna3710 ID=rna3710|Name=rna3710|organism=Nannochloropsis gaditana|type=CDS|length=1815bp|location=Sequence derived from alignment at CM002461.1:1028819..1031013+ (Nannochloropsis gaditana)
ATGGAAAGCTCGGCCAAGAAGCGCAGATGTTGCACGATACCCGCCTTGGC
ACGGGTTGGAAACCCTCCacaacctcccctcaccGCTCCAACAAAAGCTG
CAAACACCTCTGCGCCGGCGCCATTCATGTTCAGCTTCTATAGAGAATCC
GAGACCGGCCATCAAGATAGCAAGGCTGCTCTCTTTCATACATCAGGCAG
CGCGACTACAAATACCGCCGGCCCTTCGTCTATTTTTGCCTCCCGGCTTG
TACAGGAACGCAAAGCGAGTCGTATCTCCACGCGACATGCCCTGTTGCGT
CGCACGGCCAAGCAAGATCCACATACTGCTACGGATCCTCTGGCACTGCA
ATCGGAGGAACGGGTACGAGTATTGTGGGAGGCAAGTAGCAATTCTAGCA
ACATCAAAGTCCGTCGCTTGAACGGAGAGGTTGTGCGGGTGACATCAACC
GACCTCAGCCCCCTCGCACGCGCCCCAGACGCTCACTTTTCGAGGCCAAC
AGAGAAcagcgaagaggaaaataGATTGGTGTGTCATATTGATCTTCTTT
TCGACGACGTCACGCCTGGTGCGCATGGGAACAAGCTTAGCCCTACCCCC
CCCCAAATTGACACAAGCCTGGCCAGCCTCATTTATCCTCTGACGCCCGA
GTATTTCTTAAAGGAAATCTGGAACCAAAAGGCTCTCGTCATTCAAGCTG
GAGCTGGACGGCTTAAAAAAATGTGTCGGAACTTGGATCCCATCGGCGTC
TTGCCCTCATCGAATCGTCGGAaacgtccccgtcctctctcggcccctgc
ctcccgccctccctccctccctttctccaccttGCATTTGCGGGTATCGC
GGCTCTTGGAGAGTGCCCATCGAATCGTTGTCTGGATGAAAACCAGGACC
CGGCACAAAGGAGGTCGTGGCAATCGGACGAGTCGCAGGGCTGAGCAAGA
GACCAGCCCCCACGGCCGCAGGaccgccaagaaagggaaatgcggcgatg
aggagggagggcgtggttgGGATGACGTCATCCCAGGCCAGAGGCAGACG
ACCGAGcctcggcctccttcccgcgaGAACCGCCGGACGCaagcctcctg
ccccccccggccctccagggggaggggggggggagaagggctcgcgctcc
cctccctccctctccccccacggACGACATTCAATACTTGGACCAGGTAC
CTCCCTCTGTCGCGGAGGCCTGTCACAAGGCAGGGCACTCCCTCTACTTC
AACCCGCCCTGGGGGACGCAACGGCCCTATCTTCGGACGCTCTCCCGAGA
CCTGGGGCTTCTCCCCGGCGACggtctgggagggagggagggagggaggg
agggaggaggggagggaggggggaaagggggaggggacatgGAGGTCTTT
GCcgtgcgcccccccccatcgtACTCCCTTCCATTGGGACTCCCAGCACA
ATTTTACGGTCCAGATCCGAGGCCGAAAACGGTGGACCGTTCAAAATTCC
AATGTAAATGAGCCGTTGAGCAACCaccatccttcctcatccaaccgtcg
ggcgagggcgggggacaCCGCCCTTCACATGGCCTGTGGGATGCCTGTAG
AAGCTCTTCAGGCACCCAGTTTccacggccctccctcctcctcctccccc
gcatCGTTTGTCCTGCGGCCGGGGGCGGTGCTCTACCTTCCCCCGGGCTG
GTGGCATGCGGTGGAGGCTTTgacggatgaggagggaggggaggaggaag
gggaagaggtggaggtagaggaggaggaggaggaggaggaggaagaggag
gagtgcaTTCTGTGA

Synonyms

Publications