EWM26972.1, cds3701 (CDS) Nannochloropsis gaditana

Overview
NameEWM26972.1
Unique Namecds3701
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1029199..1031013 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26972.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100127g24.6204.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1029199..1031013 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom
Homology
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|585109139|gb|EWM26972.1| (hypothetical protein Naga_100127g24 [Nannochloropsis gaditana])

HSP 1 Score: 1220.3 bits (3156), Expect = 0.000e+0
Identity = 604/604 (100.00%), Postives = 604/604 (100.00%), Query Frame = 0
Query:    1 MESSAKKRRCCTIPALARVGNPPQPPLTAPTKAANTSAPAPFMFSFYRESETGHQDSKAALFHTSGSATTNTAGPSSIFASRLVQERKASRISTRHALLRRTAKQDPHTATDPLALQSEERVRVLWEASSNSSNIKVRRLNGEVVRVTSTDLSPLARAPDAHFSRPTENSEEENRLVCHIDLLFDDVTPGAHGNKLSPTPPQIDTSLASLIYPLTPEYFLKEIWNQKALVIQAGAGRLKKMCRNLDPIGVLPSSNRRKRPRPLSAPASRPPSLPFSTLHLRVSRLLESAHRIVVWMKTRTRHKGGRGNRTSRRAEQETSPHGRRTAKKGKCGDEEGGRGWDDVIPGQRQTTEPRPPSRENRRTQASCPPRPSRGRGGGEGLALPSLPLPPRTTFNTWTRYLPLSRRPVTRQGTPSTSTRPGGRNGPIFGRSPETWGFSPATVWEGGREGGREEGREGGKGEGTWRSLPCAPPHRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSPASFVLRPGAVLYLPPGWWHAVEALTDEEGGEEEGEEVEVEEEEEEEEEEEECIL 604
            MESSAKKRRCCTIPALARVGNPPQPPLTAPTKAANTSAPAPFMFSFYRESETGHQDSKAALFHTSGSATTNTAGPSSIFASRLVQERKASRISTRHALLRRTAKQDPHTATDPLALQSEERVRVLWEASSNSSNIKVRRLNGEVVRVTSTDLSPLARAPDAHFSRPTENSEEENRLVCHIDLLFDDVTPGAHGNKLSPTPPQIDTSLASLIYPLTPEYFLKEIWNQKALVIQAGAGRLKKMCRNLDPIGVLPSSNRRKRPRPLSAPASRPPSLPFSTLHLRVSRLLESAHRIVVWMKTRTRHKGGRGNRTSRRAEQETSPHGRRTAKKGKCGDEEGGRGWDDVIPGQRQTTEPRPPSRENRRTQASCPPRPSRGRGGGEGLALPSLPLPPRTTFNTWTRYLPLSRRPVTRQGTPSTSTRPGGRNGPIFGRSPETWGFSPATVWEGGREGGREEGREGGKGEGTWRSLPCAPPHRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSPASFVLRPGAVLYLPPGWWHAVEALTDEEGGEEEGEEVEVEEEEEEEEEEEECIL
Sbjct:    1 MESSAKKRRCCTIPALARVGNPPQPPLTAPTKAANTSAPAPFMFSFYRESETGHQDSKAALFHTSGSATTNTAGPSSIFASRLVQERKASRISTRHALLRRTAKQDPHTATDPLALQSEERVRVLWEASSNSSNIKVRRLNGEVVRVTSTDLSPLARAPDAHFSRPTENSEEENRLVCHIDLLFDDVTPGAHGNKLSPTPPQIDTSLASLIYPLTPEYFLKEIWNQKALVIQAGAGRLKKMCRNLDPIGVLPSSNRRKRPRPLSAPASRPPSLPFSTLHLRVSRLLESAHRIVVWMKTRTRHKGGRGNRTSRRAEQETSPHGRRTAKKGKCGDEEGGRGWDDVIPGQRQTTEPRPPSRENRRTQASCPPRPSRGRGGGEGLALPSLPLPPRTTFNTWTRYLPLSRRPVTRQGTPSTSTRPGGRNGPIFGRSPETWGFSPATVWEGGREGGREEGREGGKGEGTWRSLPCAPPHRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSPASFVLRPGAVLYLPPGWWHAVEALTDEEGGEEEGEEVEVEEEEEEEEEEEECIL 604          
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|857977509|emb|CEO96545.1| (hypothetical protein PBRA_005154 [Plasmodiophora brassicae])

HSP 1 Score: 107.071 bits (266), Expect = 1.270e-20
Identity = 65/185 (35.14%), Postives = 93/185 (50.27%), Query Frame = 0
Query:  396 TWTRYLPLSRRPVTRQGTPSTSTRPGGRNGPIFGRSPETWGFSPATVWEGGREGGREEGR---EGGKGEGTWRSLPCAPPHRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSPASFVLRPGAVLYLPPGWWHAVEALTDE 577
             W R     R      G+P  + R   R G     +PE + F    +    ++ G +  R   +GG G G       A  H TP+HWD+QHNFTVQ+ G K W +      +P++N HP SSN  + A DT +   CG+  + L+ P      SS + + F LRPG+VLY+P G+WH V+ + DE
Sbjct:  261 VWMRSAVDGRMQYLDVGSPDVA-RACYRAGHSLYFNPE-YDFQKRFIRGICQDLGMDFTRAIQDGGIG-GDVEVFAVAGRHHTPWHWDAQHNFTVQLSGTKHWAIARGPQTDPMTNFHPRSSNSASLADDTIMLRRCGLVPDQLEPPG----DSSEAVSRFTLRPGSVLYMPAGFWHRVDVIDDE 438          
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|1173943432|gb|OQR92285.1| (hypothetical protein ACHHYP_03858 [Achlya hypogyna])

HSP 1 Score: 91.2781 bits (225), Expect = 1.085e-15
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 0
Query:  473 HRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSP--ASFVLRPGAVLYLPPGWWHAVEALTDEEG 579
            H TP+H D+Q N T+Q+ G KRW+     V++PL+N H +S+N  +   D   H  C  P   LQ      PP+   P  +S VLRPG+VLY+P G+WH VEA+  +EG
Sbjct:  276 HSTPWHLDAQQNITIQLTGTKRWSFCKGPVDDPLTNLHLASTNTPSVQDDLLTHTMCQAPWSTLQ------PPTEDDPRISSVVLRPGSVLYVPAGYWHKVEAM--DEG 376          
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|1173940285|gb|OQR89750.1| (hypothetical protein THRCLA_09598 [Thraustotheca clavata])

HSP 1 Score: 90.1225 bits (222), Expect = 2.744e-15
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 0
Query:  456 EGGKGEGTWRSLPCAPPHRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSP--ASFVLRPGAVLYLPPGWWHAVEALTDEEGG 580
            +GG G G          H TP+H D+Q N T+Q+ G KRW+     V++P++N H +S+N  +   D   H  C      LQ      PPS   P  +S +LRPG+VLY+P G+WH VEA+  +EG 
Sbjct:  262 DGGIG-GDIELFAVQGRHSTPWHLDAQQNITIQLTGTKRWSFCKGPVDDPMTNLHLASTNTTSVQDDLITHSMCNATTLNLQ------PPSDDDPRVSSVLLRPGSVLYVPAGYWHKVEAM--DEGS 379          
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|669157706|ref|XP_008614415.1| (hypothetical protein SDRG_10212 [Saprolegnia diclina VS20] >gi|530733771|gb|EQC32013.1| hypothetical protein SDRG_10212 [Saprolegnia diclina VS20])

HSP 1 Score: 88.5817 bits (218), Expect = 9.726e-15
Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = 0
Query:  456 EGGKGEGTWRSLPCAPPHRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSP--ASFVLRPGAVLYLPPGWWHAVEALTDEEGGEEEGEEVE 588
            +GG G G          H TP+H D+Q N T+Q+ G KRW+     V++P++N H +S+N  +   D   H   G        P+   PP+   P  AS VLRPG+VLY+P G+WH VEA+  +EG       ++
Sbjct:  263 DGGMG-GDIELFAVQGRHSTPWHLDAQQNITIQLTGTKRWSFVKGPVHDPMTNLHLASTNTPSVQDDLITHCMSG------ATPAMLTPPADDDPAIASVVLRPGSVLYVPAGYWHKVEAM--DEGSLSMNFSID 388          
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|813206304|ref|XP_012210129.1| (hypothetical protein SPRG_15682 [Saprolegnia parasitica CBS 223.65] >gi|641524598|gb|KDO19159.1| hypothetical protein SPRG_15682 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 88.1965 bits (217), Expect = 1.059e-14
Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = 0
Query:  456 EGGKGEGTWRSLPCAPPHRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSP--ASFVLRPGAVLYLPPGWWHAVEALTDEEGGEEEGEEVE 588
            +GG G G          H TP+H D+Q N T+Q+ G KRW+     V++P++N H +S+N  +   D   H   G        P+   PP+   P  AS VLRPG+VLY+P G+WH VEA+  +EG       ++
Sbjct:  264 DGGMG-GDIELFAVQGRHSTPWHLDAQQNITIQLTGTKRWSFVKGPVHDPMTNLHLASTNTPSVQDDLLTHCMSG------ATPAMLTPPADDDPAVASVVLRPGSVLYVPAGYWHKVEAM--DEGSLSMNFSID 389          
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|698814284|ref|XP_009840171.1| (hypothetical protein H257_14120 [Aphanomyces astaci] >gi|574104932|gb|ETV70459.1| hypothetical protein H257_14120 [Aphanomyces astaci])

HSP 1 Score: 85.8853 bits (211), Expect = 7.263e-14
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 0
Query:  473 HRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSPASFVLRPGAVLYLPPGWWHAVEALTDEEG 579
            H TP+H+D+QHNFTVQ+ G K W+     + +P+SN H SSSN  +   DT  H   G         +    P +SS  +  LRPG+VLYLP G+WH+V +   +EG
Sbjct:  285 HHTPWHFDAQHNFTVQLTGTKEWSYAKGPLTDPMSNLHLSSSNTASVLEDTLAHAMAG---------ATDLTPPTSSFETVTLRPGSVLYLPAGYWHSVTSF--DEG 380          
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|698814286|ref|XP_009840172.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574104933|gb|ETV70460.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 84.7297 bits (208), Expect = 9.936e-14
Identity = 45/107 (42.06%), Postives = 61/107 (57.01%), Query Frame = 0
Query:  473 HRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSPASFVLRPGAVLYLPPGWWHAVEALTDEEG 579
            H TP+H+D+QHNFTVQ+ G K W+     + +P+SN H SSSN  +   DT  H   G              P +SS  +  LRPG+VLYLP G+WH+V +   +EG
Sbjct:  285 HHTPWHFDAQHNFTVQLTGTKEWSYAKGPLTDPMSNLHLSSSNTASVLEDTLAHAMAGAT---------DLTPPTSSFETVTLRPGSVLYLPAGYWHSVTSF--DEG 380          
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|929771620|ref|XP_014160743.1| (hypothetical protein SARC_01034 [Sphaeroforma arctica JP610] >gi|906958717|gb|KNC86841.1| hypothetical protein SARC_01034 [Sphaeroforma arctica JP610])

HSP 1 Score: 83.5741 bits (205), Expect = 4.557e-13
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 0
Query:  473 HRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSPASFVLRPGAVLYLPPGWWHAVEALTDEEGG 580
            H TP+H+D+Q NFT+Q+RG KRW+V  S++ + ++N HP S+N  A   D   H   G       AP            +FVLRPG++LY P G WH V+   +E+GG
Sbjct:  359 HDTPWHFDAQENFTIQLRGTKRWSVCKSDLKDIVTNLHPDSTNIEAVYNDYKTH--SGYTGTRPTAPK----EGIDDIYTFVLRPGSILYAPAGMWHRVQC-ENEDGG 459          
BLAST of EWM26972.1 vs. NCBI_GenBank
Match: gi|673051263|ref|XP_008879592.1| (hypothetical protein H310_13744 [Aphanomyces invadans] >gi|574464621|gb|ETV91666.1| hypothetical protein H310_13744 [Aphanomyces invadans])

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-12
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 0
Query:  473 HRTPFHWDSQHNFTVQIRGRKRWTVQNSNVNEPLSNHHPSSSNRRARAGDTALHMACGMPVEALQAPSFHGPPSSSSPASFVLRPGAVLYLPPGWWHAVEAL 574
            H TP+H+D+QHNFTVQ+ G K W+     + +P+SN H SSSN  +   D   H   G         +    P ++   +  LRPG+VLYLP G+WH+V + 
Sbjct:  283 HHTPWHFDAQHNFTVQLVGTKEWSYAKGPLTDPMSNLHLSSSNTASVVDDMLAHAMSG---------ATDLKPPTTEIETVTLRPGSVLYLPAGYWHSVTSF 375          
The following BLAST results are available for this feature:
BLAST of EWM26972.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109139|gb|EWM26972.1|0.000e+0100.00hypothetical protein Naga_100127g24 [Nannochlorops... [more]
gi|857977509|emb|CEO96545.1|1.270e-2035.14hypothetical protein PBRA_005154 [Plasmodiophora b... [more]
gi|1173943432|gb|OQR92285.1|1.085e-1543.12hypothetical protein ACHHYP_03858 [Achlya hypogyna... [more]
gi|1173940285|gb|OQR89750.1|2.744e-1538.58hypothetical protein THRCLA_09598 [Thraustotheca c... [more]
gi|669157706|ref|XP_008614415.1|9.726e-1536.30hypothetical protein SDRG_10212 [Saprolegnia dicli... [more]
gi|813206304|ref|XP_012210129.1|1.059e-1436.30hypothetical protein SPRG_15682 [Saprolegnia paras... [more]
gi|698814284|ref|XP_009840171.1|7.263e-1442.06hypothetical protein H257_14120 [Aphanomyces astac... [more]
gi|698814286|ref|XP_009840172.1|9.936e-1442.06hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|929771620|ref|XP_014160743.1|4.557e-1340.74hypothetical protein SARC_01034 [Sphaeroforma arct... [more]
gi|673051263|ref|XP_008879592.1|1.023e-1239.22hypothetical protein H310_13744 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3710rna3710Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications