rna3708, rna3708 (mRNA) Nannochloropsis gaditana

Overview
Namerna3708
Unique Namerna3708
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length915
Alignment locationCM002461.1:1023129..1024437 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100127g22.6219.mrna
Orig protein idgnl|cribi|Naga_100127g22.6219
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1023129..1024437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100127g22gene3572Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3708rna3708-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26987.1cds3699Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3708 ID=rna3708|Name=rna3708|organism=Nannochloropsis gaditana|type=mRNA|length=915bp
ATGGAGGGACGAGCGGAGAGCGTCTGGTGCTTGGTCCGCCCCCCTGGTCA
CCATGCCACGCCCTCCCAGTCCATGGGCTTCTGTTTTGTCAACCACGCCG
GGGTGGCTGCCATGCACGCGCGTGCTCGATACGGGGTCCGGCGGGTGGCG
GTTTTGGACCCAGACGTCCACCATGGAAACGGCACCCAGGACGGCTTTCG
TGACGATCCTGACCTCTTCTACGCCTCTACGCACGTGGGCTACGGGTTTT
ACCCTGGCACGGGCTCGAGAAAAGACGCGAAAGGGAGGGAGGATCGCCTG
GTGAATGTGCCCTTCCGGGAGGGGGAAGGAAGCAGCGAGAAGTTCCGGCA
GGCGTGGGCGGAGGAAATTTTCCCCAAGTTAAGAAAGTTTCAGCCGGAAT
TGATCATTTTGTCGATGGGATTCGATGCGGTGGCGGAAGATCCGTTGGGG
GAGATGGAGTTGCGCCCTGAGGATTTCGAATGGTTCAGCCGGGAAGTCCG
GCGGGTGGGAGGGAGGAAGGGGGGGAGGGAGGGGGGGAGGGAGGGGTGCA
AGGTGGTGTCGATATTGGAGGGAGGGTACGATCTTGCAGCACTGGGAGCC
TGCACAATTGCCCATGTGAGGGGATTGTTGGGTGCTACCCGTGCAGGGGA
GGGGGAGGAGGGCGAGGGGGAGGGCGAGGGGGAGGGCGAGGGGGAGGAAG
GGCCCGAGGTGCATTTGCTGCCGCCGGTGACCATGCGGGACGAGGAGGAG
CTGGTGGAGGGACTAAAGGAGGTTGGGTTGTGTGTGTCGGGGCGGAGACC
AGGGAGGAACAAGGTAAGAGCGACACAAAAGACGACTCCCACGACGATTT
GTGGGTGTGATATGTGTTTCTTTGGCGTATGGGTGTATAAAGTTGTACAG
GATCTTGTGATGTAG
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protein sequence of rna3708

>rna3708-protein ID=rna3708-protein|Name=rna3708|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MRIACVGACWCLVRSFLQDHSCGLGTLKLRMEVLSKARNAETVEAATVAG
VNAVIEEWLGKPLPRLSKGVPPCPQARPSSRPPPPEPLPPYPLLVISPPA
CLKHSIPGHFERPARLTAILHALHPPSRLPFLPPPLSPPPSPPLRFSSLM
RTPPAPHTSNSPAFTRPNTSPTSPPSSLSPRPWPPPPRSKSLLISTLPLR
RTYSRPTLLPP
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mRNA from alignment at CM002461.1:1023129..1024437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3708 ID=rna3708|Name=rna3708|organism=Nannochloropsis gaditana|type=mRNA|length=1309bp|location=Sequence derived from alignment at CM002461.1:1023129..1024437- (Nannochloropsis gaditana)
ATGCGTATTGCATGTGTAGGTGCCTGCTGGTGTCTCGTTCGCTCATTTCT
CCAAGATCACTCGTGTGGTCTAGGCACACGTAAGTACCGAAATATCGGCA
GATGAAGGCAGTTGCCCACCAGTGACCGAAAAAGCGATGCTCATTTTTGC
TAGACAGCTCTTCGAGGAGATGGACTTCAGGTCTTGCGCTGTGTAAATGT
AGTAGAATAAGGTCATCGAGGCGACCTCAACTTGTTTCCAGGGATCACAG
GATGTTATGCGCGAGTTCCAAACTAGTGCACTCAAGGAGAGGGACGAGTT
GACTTAAGACAACGAATTCTCAGTAACTTATGACGTGAGAGTCCCGAACT
TCGAGCTACCCCTTTAAGTGATGGTGATACTTGTTTCTCTGTGGTACGAC
GAAGCGTAAAAGGTCTTCAACCAGCAAATATTAACTTTCTGAGTGAGTCA
TGATAAATATGCCCTCACAAAATAATATCTGCGACGACAAACACAGTGAA
GCTGAGGATGGAAGTGCTTTCAAAGGCAAGAAATGCGGAGACTGTAGAAG
CGGCGACAGTAGCAGGGGTCAATGCTGTCATTGAGGAATGGCTGGTAAGG
TTATATCAAAGCAAACCATTGTCACTTGCATTGTTTGTTGTATACCAGAA
AATGCATGGATGAAAGTTGTTGACAAGCAGGCACATCCATCAAAGAAGGA
AAGATCGTCATGGTTGCATACCCCAGGCAGCATCTGGGTGACTTGAACTT
GACTCCTTCGGTACTTGGGAGCGACGCTTAAGGATCTAGAGTAATCCGGC
ATATGCACACGACGATCACTCATTCTTGACACTGGCTATCACACCATTAG
GGCAAACCCCTTCCGCGGCTTAGCAAGGGAGTCCCCCCTTGTCCTCAGGC
ACGCCCCTCTTCCCGCCCTCCTCCTCCTGAGCCTCTCCCACCCTATCCTC
TCCTCGTCATTTCTCCCCCGGCATGCTTGAAGCACAGTATACCCGGACAC
TTCGAGCGACCGGCACGACTCACGGCCATCCTCCACGCCCTCCATCCGCC
CTCCCGCCTCCCTTTCCTCCCCCCCCCTCTTTCCCCCCCTCCCTCCCCCC
CTCTGCGTTTCTCCTCTCTGATGCGGACTCCCCCCGCGCCACACACGAGC
AACTCGCCCGCTTTCACACGACCCAACACCTCGCCCACCTCGCCTCCCTC
TTCGCTCAGTCCCAGACCTTGGCCGCCACCTCCCAGGTCCAAGAGCCTTC
TCATCTCGACCCTTCCTCTTCGCCGCACCTATTCCCGTCCTACCCTCCTG
CCTCCCTGA
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Coding sequence (CDS) from alignment at CM002461.1:1023129..1024437-

>rna3708 ID=rna3708|Name=rna3708|organism=Nannochloropsis gaditana|type=CDS|length=1908bp|location=Sequence derived from alignment at CM002461.1:1023129..1024437- (Nannochloropsis gaditana)
GGCAAACCCCTTCCGCGGCTTAGCAAGGGAGTCCCCCCTTGTCCTCAGGC
ACGCCCCTCTTCCCGCCCTCCTCCTCCTGAGCCTCTCCCACCCTATCCTC
TCCTCGTCATTTCTCCCCCGGCATGCTTGAAGCACAGTATACCCGGACAC
TTCGAGCGACCGGCACGACTCACGGCCATCCTCCACGCCCTCCATCCGCC
CTCCCGCCTCCCTTTCCTCCCCCCCCCTCTTTCCCCCCCTCCCTCCCCCC
CTCTGCGTTTCTCCTCTCTGATGCGGACTCCCCCCGCGCCACACACGAGC
AACTCGCCCGCTTTCACACGACCCAACACCTCGCCCACCTCGCCTCCCTC
TTCGCTCAGTCCCAGACCTTGGCCGCCACCTCCCAGGTCCAAGAGCCTTC
TCATCTCGACCCTTCCTCTTCGCCGCACCTATTCCCGTCCTACCCTCCTG
CCTCCCTGATGAAGCTGAGGATGGAAGTGCTTTCAAAGGCAAGAAATGCG
GAGACTGTAGAAGCGGCGACAGTAGCAGGGGTCAATGCTGTCATTGAGGA
ATGGCTGATGCGTATTGCATGTGTAGGTGCCTGCTGGTGTCTCGTTCGCT
CATTTCTCCAAGATCACTCGTGTGGTCTAGGCACACGGCAAACCCCTTCC
GCGGCTTAGCAAGGGAGTCCCCCCTTGTCCTCAGGCACGCCCCTCTTCCC
GCCCTCCTCCTCCTGAGCCTCTCCCACCCTATCCTCTCCTCGTCATTTCT
CCCCCGGCATGCTTGAAGCACAGTATACCCGGACACTTCGAGCGACCGGC
ACGACTCACGGCCATCCTCCACGCCCTCCATCCGCCCTCCCGCCTCCCTT
TCCTCCCCCCCCCTCTTTCCCCCCCTCCCTCCCCCCCTCTGCGTTTCTCC
TCTCTGATGCGGACTCCCCCCGCGCCACACACGAGCAACTCGCCCGCTTT
CACACGACCCAACACCTCGCCCACCTCGCCTCCCTCTTCGCTCAGTCCCA
GACCTTGGCCGCCACCTCCCAGGTCCAAGAGCCTTCTCATCTCGACCCTT
CCTCTTCGCCGCACCTATTCCCGTCCTACCCTCCTGCCTCCCTGATGAAG
CTGAGGATGGAAGTGCTTTCAAAGGCAAGAAATGCGGAGACTGTAGAAGC
GGCGACAGTAGCAGGGGTCAATGCTGTCATTGAGGAATGGCTGATGCGTA
TTGCATGTGTAGGTGCCTGCTGGTGTCTCGTTCGCTCATTTCTCCAAGAT
CACTCGTGTGGTCTAGGCACACGGCAAACCCCTTCCGCGGCTTAGCAAGG
GAGTCCCCCCTTGTCCTCAGGCACGCCCCTCTTCCCGCCCTCCTCCTCCT
GAGCCTCTCCCACCCTATCCTCTCCTCGTCATTTCTCCCCCGGCATGCTT
GAAGCACAGTATACCCGGACACTTCGAGCGACCGGCACGACTCACGGCCA
TCCTCCACGCCCTCCATCCGCCCTCCCGCCTCCCTTTCCTCCCCCCCCCT
CTTTCCCCCCCTCCCTCCCCCCCTCTGCGTTTCTCCTCTCTGATGCGGAC
TCCCCCCGCGCCACACACGAGCAACTCGCCCGCTTTCACACGACCCAACA
CCTCGCCCACCTCGCCTCCCTCTTCGCTCAGTCCCAGACCTTGGCCGCCA
CCTCCCAGGTCCAAGAGCCTTCTCATCTCGACCCTTCCTCTTCGCCGCAC
CTATTCCCGTCCTACCCTCCTGCCTCCCTGATGAAGCTGAGGATGGAAGT
GCTTTCAAAGGCAAGAAATGCGGAGACTGTAGAAGCGGCGACAGTAGCAG
GGGTCAATGCTGTCATTGAGGAATGGCTGATGCGTATTGCATGTGTAGGT
GCCTGCTGGTGTCTCGTTCGCTCATTTCTCCAAGATCACTCGTGTGGTCT
AGGCACAC
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Synonyms
Publications