EWM26987.1, cds3699 (CDS) Nannochloropsis gaditana

Overview
NameEWM26987.1
Unique Namecds3699
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1024359..1024437 -
Alignment locationCM002461.1:1023844..1023941 -
Alignment locationCM002461.1:1023129..1023587 -

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Properties
Property NameValue
Protein idEWM26987.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100127g22.6219.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1024359..1024437 -
CM002461.1supercontigCM002461.1:1023844..1023941 -
CM002461.1supercontigCM002461.1:1023129..1023587 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM26987.1 vs. NCBI_GenBank
Match: gi|585109154|gb|EWM26987.1| (hypothetical protein Naga_100127g22 [Nannochloropsis gaditana])

HSP 1 Score: 398.282 bits (1022), Expect = 7.427e-140
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0 
Query:    1 MRIACVGACWCLVRSFLQDHSCGLGTLKLRMEVLSKARNAETVEAATVAGVNAVIEEWLGKPLPRLSKGVPPCPQARPSSRPPPPEPLPPYPLLVISPPACLKHSIPGHFERPARLTAILHALHPPSRLPFLPPPLSPPPSPPLRFSSLMRTPPAPHTSNSPAFTRPNTSPTSPPSSLSPRPWPPPPRSKSLLISTLPLRRTYSRPTLLPP 211
            MRIACVGACWCLVRSFLQDHSCGLGTLKLRMEVLSKARNAETVEAATVAGVNAVIEEWLGKPLPRLSKGVPPCPQARPSSRPPPPEPLPPYPLLVISPPACLKHSIPGHFERPARLTAILHALHPPSRLPFLPPPLSPPPSPPLRFSSLMRTPPAPHTSNSPAFTRPNTSPTSPPSSLSPRPWPPPPRSKSLLISTLPLRRTYSRPTLLPP
Sbjct:    1 MRIACVGACWCLVRSFLQDHSCGLGTLKLRMEVLSKARNAETVEAATVAGVNAVIEEWLGKPLPRLSKGVPPCPQARPSSRPPPPEPLPPYPLLVISPPACLKHSIPGHFERPARLTAILHALHPPSRLPFLPPPLSPPPSPPLRFSSLMRTPPAPHTSNSPAFTRPNTSPTSPPSSLSPRPWPPPPRSKSLLISTLPLRRTYSRPTLLPP 211
[Close]
BLAST of EWM26987.1 vs. NCBI_GenBank
Match: gi|553179838|ref|XP_005852771.1| (histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295763|gb|EKU23062.1| histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 145.591 bits (366), Expect = 2.886e-38
Identity = 86/94 (91.49%), Postives = 87/94 (92.55%), Query Frame = 0 
Query:   31 MEVLSKARNAETVEAATVAGVNAVIEEWLGKPLPRLSKGVPPCPQARPSSRPPPPEPLPPYPLLVISPPACLKHSIPGHFERPARLTAILHALH 124
            MEVLSK R AETV AATV GVNAVIEEWLGKPLPRL KGVPPCPQARPS R PPPEPLPPYPLLVISPPACLKH+IPGHFERPARLTAILHALH
Sbjct:    1 MEVLSKERFAETVGAATVGGVNAVIEEWLGKPLPRLCKGVPPCPQARPSFRLPPPEPLPPYPLLVISPPACLKHNIPGHFERPARLTAILHALH 94
The following BLAST results are available for this feature:
BLAST of EWM26987.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109154|gb|EWM26987.1|7.427e-140100.00hypothetical protein Naga_100127g22 [Nannochlorops... [more]
gi|553179838|ref|XP_005852771.1|2.886e-3891.49histone deacetylase superfamily protein, partial [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3708rna3708Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications