rna3707, rna3707 (mRNA) Nannochloropsis gaditana

Overview
Namerna3707
Unique Namerna3707
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length885
Alignment locationCM002461.1:1021830..1023036 -

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Properties
Property NameValue
Producthistone deacetylase superfamily protein
Orig transcript idgnl|cribi|Naga_100127g21.6208.mrna
Orig protein idgnl|cribi|Naga_100127g21.6208
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1021830..1023036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100127g21gene3571Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3707rna3707-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26976.1cds3698Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3707 ID=rna3707|Name=rna3707|organism=Nannochloropsis gaditana|type=mRNA|length=885bp
ATGAAACGATATTGCGAAGCCGCCTTACGCGCTGGCTTGCTTCTATCCGT
TCTGTTAGCTCTGCCGCACATTGGACAAGTTTCAAAATGCGAGTCCGGGT
GTCAAGTTGGCTTAAAGAATCCAAATAGAGATTCTCTCGTGGTGGTGGCA
GCATTCTTTAATGTGGACCTTGTGCAGGCATGTCTTGATTCAATCCTGCG
ATCTTCTTCTGGTGAGCCCTTTCCGGGAGACGTTGTAGTGGTGCAGCAAC
CCTCCAACCACACTGAGGAAATGACCCAAATGATCCAGGAGCGAAGGAAA
ATGGACAATGGAAGAGCAGCCGGTATCCTTCATCACATTCTTACAGAGGA
TACCCCGCTCGTTGGTCAGTTGTGGGCCATGCCTTTTGCACATAATGTTG
TTGAAACTTCCAAGTACGCCATTACGTGCATATCCGATGGTGACGTCATA
TTGTTTGGGGATTGGTTGGCGGAGATTCGATCAATCTTGGATGGGTATCC
TAGTGTTTACTGGGCATCCGTTTCTCTTCACCCTTTCAACAACATTAACC
CAGACTACATTTCGAATGGCGCCGAGCATGCAGACTTTATTGAAGCTCCA
ACGGGGATGCAAATGGTGTGTTTTCGCACCCCGGAATTCATAAGACTCTA
CAAATCCGGGACGACCATACAAGATGCGCATATTCTTGAATGGATCAAGA
GCCAAGGAAGAAGGGTAGTAAGGACGAAAAGGAACCATTTAGTGCACATG
ATGTGGTCAGTGTACGAGGAAAAGATACCTGTGCACAAGGATTATCTCGA
GTACAAAAATGAACGGGCAAAGAGTGGAAATTTGTGGAAATCTTTCAAAA
AAGCTCACGATGCCAACATGACCATAGTTTTTTAG
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protein sequence of rna3707

>rna3707-protein ID=rna3707-protein|Name=rna3707|organism=Nannochloropsis gaditana|type=polypeptide|length=304bp
MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVA
VLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRL
VNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLG
EMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGA
CTIAHVRGLLGATRAGEGEEGEGEGEGEGEGEEGPEVHLLPPVTMRDEEE
LVEGLKEVGLCVSGRRPGRNKVRATQKTTPTTICGCDMCFFGVWVYKVVQ
DLVM
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mRNA from alignment at CM002461.1:1021830..1023036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3707 ID=rna3707|Name=rna3707|organism=Nannochloropsis gaditana|type=mRNA|length=1207bp|location=Sequence derived from alignment at CM002461.1:1021830..1023036- (Nannochloropsis gaditana)
ATGGAGGGACGAGCGGAGAGCGTCTGGTGCTTGGTCCGCCCCCCTGGTCA
CCATGCCACGCCCTCCCAGTCCATGGGCTTCTGTTTTGTCAACCACGCCG
GGGTGGCTGCCATGCACGCGCGTGCTCGATACGGGGTCCGGCGGGTGGCG
GTTTTGGACCCAGGTGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAAGGAGGGTGGGTGGGAGGGAGGGAGGGAGGGAGAGGGACCAAGA
TGACGATTGGGTTTTAGGATCTGGATTCACGTCCCGAGGGAATAAGCTTC
AAGTCTCGTGGGCGCTCAATTCCTCCCGTCGTTCCTCCTTTCCCCCCTCC
TTCCCCTCTCCTTGCCTCCCTCCTGGTAGACGTCCACCATGGAAACGGCA
CCCAGGACGGCTTTCGTGACGATCCTGACCTCTTCTACGCCTCTACGCAC
GTGGGCTACGGGTTTTACCCTGGCACGGGCTCGAGAAAAGACGCGAAAGG
GAGGGAGGATCGCCTGGTGAATGTGCCCTTCCGGGAGGGGGAAGGAAGCA
GCGAGAAGTTCCGGCAGGCGTGGGCGGAGGAAATTTTCCCCAAGTTAAGA
AAGTTTCAGCCGGAATTGATCATTTTGTCGATGGGATTCGATGCGGTGGC
GGAAGATCCGTTGGGGGAGATGGAGTTGCGCCCTGAGGATTTCGAATGGT
TCAGCCGGGAAGTCCGGCGGGTGGGAGGGAGGAAGGGGGGGAGGGAGGGG
GGGAGGGAGGGGTGCAAGGTGGTGTCGATATTGGAGGGAGGGTACGATCT
TGCAGCACTGGGAGCCTGCACAATTGCCCATGTGAGGGGATTGTTGGGTG
CTACCCGTGCAGGGGAGGGGGAGGAGGGCGAGGGGGAGGGCGAGGGGGAG
GGCGAGGGGGAGGAAGGGCCCGAGGTGCATTTGCTGCCGCCGGTGACCAT
GCGGGACGAGGAGGAGCTGGTGGAGGGACTAAAGGAGGTGCGGGTAGAGG
ACGAGGGGGAGGAAGTGAGGAAGGAAGGGAGGGAGGGAGGGAGGGACGAA
TAAGGAGGGTCAGGTTGGGTTGTGTGTGTCGGGGCGGAGACCAGGGAGGA
ACAAGGTAAGAGCGACACAAAAGACGACTCCCACGACGATTTGTGGGTGT
GATATGTGTTTCTTTGGCGTATGGGTGTATAAAGTTGTACAGGATCTTGT
GATGTAG
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Coding sequence (CDS) from alignment at CM002461.1:1021830..1023036-

>rna3707 ID=rna3707|Name=rna3707|organism=Nannochloropsis gaditana|type=CDS|length=2745bp|location=Sequence derived from alignment at CM002461.1:1021830..1023036- (Nannochloropsis gaditana)
GTTGGGTTGTGTGTGTCGGGGCGGAGACCAGGGAGGAACAAGGTAAGAGC
GACACAAAAGACGACTCCCACGACGATTTGTGGGTGTGATATGTGTTTCT
TTGGCGTATGGGTGTATAAAGTTGTACAGGATCTTGTGATGTAGACGTCC
ACCATGGAAACGGCACCCAGGACGGCTTTCGTGACGATCCTGACCTCTTC
TACGCCTCTACGCACGTGGGCTACGGGTTTTACCCTGGCACGGGCTCGAG
AAAAGACGCGAAAGGGAGGGAGGATCGCCTGGTGAATGTGCCCTTCCGGG
AGGGGGAAGGAAGCAGCGAGAAGTTCCGGCAGGCGTGGGCGGAGGAAATT
TTCCCCAAGTTAAGAAAGTTTCAGCCGGAATTGATCATTTTGTCGATGGG
ATTCGATGCGGTGGCGGAAGATCCGTTGGGGGAGATGGAGTTGCGCCCTG
AGGATTTCGAATGGTTCAGCCGGGAAGTCCGGCGGGTGGGAGGGAGGAAG
GGGGGGAGGGAGGGGGGGAGGGAGGGGTGCAAGGTGGTGTCGATATTGGA
GGGAGGGTACGATCTTGCAGCACTGGGAGCCTGCACAATTGCCCATGTGA
GGGGATTGTTGGGTGCTACCCGTGCAGGGGAGGGGGAGGAGGGCGAGGGG
GAGGGCGAGGGGGAGGGCGAGGGGGAGGAAGGGCCCGAGGTGCATTTGCT
GCCGCCGGTGACCATGCGGGACGAGGAGGAGCTGGTGGAGGGACTAAAGG
AGATGGAGGGACGAGCGGAGAGCGTCTGGTGCTTGGTCCGCCCCCCTGGT
CACCATGCCACGCCCTCCCAGTCCATGGGCTTCTGTTTTGTCAACCACGC
CGGGGTGGCTGCCATGCACGCGCGTGCTCGATACGGGGTCCGGCGGGTGG
CGGTTTTGGACCCAGGTTGGGTTGTGTGTGTCGGGGCGGAGACCAGGGAG
GAACAAGGTAAGAGCGACACAAAAGACGACTCCCACGACGATTTGTGGGT
GTGATATGTGTTTCTTTGGCGTATGGGTGTATAAAGTTGTACAGGATCTT
GTGATGTAGACGTCCACCATGGAAACGGCACCCAGGACGGCTTTCGTGAC
GATCCTGACCTCTTCTACGCCTCTACGCACGTGGGCTACGGGTTTTACCC
TGGCACGGGCTCGAGAAAAGACGCGAAAGGGAGGGAGGATCGCCTGGTGA
ATGTGCCCTTCCGGGAGGGGGAAGGAAGCAGCGAGAAGTTCCGGCAGGCG
TGGGCGGAGGAAATTTTCCCCAAGTTAAGAAAGTTTCAGCCGGAATTGAT
CATTTTGTCGATGGGATTCGATGCGGTGGCGGAAGATCCGTTGGGGGAGA
TGGAGTTGCGCCCTGAGGATTTCGAATGGTTCAGCCGGGAAGTCCGGCGG
GTGGGAGGGAGGAAGGGGGGGAGGGAGGGGGGGAGGGAGGGGTGCAAGGT
GGTGTCGATATTGGAGGGAGGGTACGATCTTGCAGCACTGGGAGCCTGCA
CAATTGCCCATGTGAGGGGATTGTTGGGTGCTACCCGTGCAGGGGAGGGG
GAGGAGGGCGAGGGGGAGGGCGAGGGGGAGGGCGAGGGGGAGGAAGGGCC
CGAGGTGCATTTGCTGCCGCCGGTGACCATGCGGGACGAGGAGGAGCTGG
TGGAGGGACTAAAGGAGATGGAGGGACGAGCGGAGAGCGTCTGGTGCTTG
GTCCGCCCCCCTGGTCACCATGCCACGCCCTCCCAGTCCATGGGCTTCTG
TTTTGTCAACCACGCCGGGGTGGCTGCCATGCACGCGCGTGCTCGATACG
GGGTCCGGCGGGTGGCGGTTTTGGACCCAGGTTGGGTTGTGTGTGTCGGG
GCGGAGACCAGGGAGGAACAAGGTAAGAGCGACACAAAAGACGACTCCCA
CGACGATTTGTGGGTGTGATATGTGTTTCTTTGGCGTATGGGTGTATAAA
GTTGTACAGGATCTTGTGATGTAGACGTCCACCATGGAAACGGCACCCAG
GACGGCTTTCGTGACGATCCTGACCTCTTCTACGCCTCTACGCACGTGGG
CTACGGGTTTTACCCTGGCACGGGCTCGAGAAAAGACGCGAAAGGGAGGG
AGGATCGCCTGGTGAATGTGCCCTTCCGGGAGGGGGAAGGAAGCAGCGAG
AAGTTCCGGCAGGCGTGGGCGGAGGAAATTTTCCCCAAGTTAAGAAAGTT
TCAGCCGGAATTGATCATTTTGTCGATGGGATTCGATGCGGTGGCGGAAG
ATCCGTTGGGGGAGATGGAGTTGCGCCCTGAGGATTTCGAATGGTTCAGC
CGGGAAGTCCGGCGGGTGGGAGGGAGGAAGGGGGGGAGGGAGGGGGGGAG
GGAGGGGTGCAAGGTGGTGTCGATATTGGAGGGAGGGTACGATCTTGCAG
CACTGGGAGCCTGCACAATTGCCCATGTGAGGGGATTGTTGGGTGCTACC
CGTGCAGGGGAGGGGGAGGAGGGCGAGGGGGAGGGCGAGGGGGAGGGCGA
GGGGGAGGAAGGGCCCGAGGTGCATTTGCTGCCGCCGGTGACCATGCGGG
ACGAGGAGGAGCTGGTGGAGGGACTAAAGGAGATGGAGGGACGAGCGGAG
AGCGTCTGGTGCTTGGTCCGCCCCCCTGGTCACCATGCCACGCCCTCCCA
GTCCATGGGCTTCTGTTTTGTCAACCACGCCGGGGTGGCTGCCATGCACG
CGCGTGCTCGATACGGGGTCCGGCGGGTGGCGGTTTTGGACCCAG
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Synonyms
Publications