EWM26976.1, cds3698 (CDS) Nannochloropsis gaditana

Overview
NameEWM26976.1
Unique Namecds3698
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1022874..1023036 -
Alignment locationCM002461.1:1022050..1022657 -
Alignment locationCM002461.1:1021830..1021973 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26976.1
Producthistone deacetylase superfamily protein
Orig transcript idgnl|cribi|Naga_100127g21.6208.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1022874..1023036 -
CM002461.1supercontigCM002461.1:1022050..1022657 -
CM002461.1supercontigCM002461.1:1021830..1021973 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR023801His_deacetylse_dom
IPR000286His_deacetylse
Homology
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|585109143|gb|EWM26976.1| (histone deacetylase superfamily protein [Nannochloropsis gaditana])

HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
Query:    1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGATRAGEGEEGEGEGEGEGEGEEGPEVHLLPPVTMRDEEELVEGLKEVGLCVSGRRPGRNKVRATQKTTPTTICGCDMCFFGVWVYKVVQDLVM 304
            MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGATRAGEGEEGEGEGEGEGEGEEGPEVHLLPPVTMRDEEELVEGLKEVGLCVSGRRPGRNKVRATQKTTPTTICGCDMCFFGVWVYKVVQDLVM
Sbjct:    1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGATRAGEGEEGEGEGEGEGEGEEGPEVHLLPPVTMRDEEELVEGLKEVGLCVSGRRPGRNKVRATQKTTPTTICGCDMCFFGVWVYKVVQDLVM 304          
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|553179838|ref|XP_005852771.1| (histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295763|gb|EKU23062.1| histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 382.874 bits (982), Expect = 2.574e-129
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0
Query:    1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCK 184
            MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGC+
Sbjct:  214 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCE 397          
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1056771891|ref|WP_068194554.1| (acetoin utilization protein [Rhodospirillaceae bacterium CCH5-H10])

HSP 1 Score: 216.083 bits (549), Expect = 4.439e-65
Identity = 109/212 (51.42%), Postives = 137/212 (64.62%), Query Frame = 0
Query:    1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGA 212
            ++GRA + +  VRPPGHHATP    GFC  N+  + AMHARA YGVRRVA++D DVHHG GTQ     DPDLFYASTH  Y  YPGTGS ++ +G    +VNVP   G GS+  FR AW + + P L  F PEL+I+S GFDA   DPL ++++  EDF W + E+  + GR         G ++VS+LEGGYDLAAL     AHVR L+ A
Sbjct:  108 LKGRARTAFAAVRPPGHHATPDVPGGFCLFNNVAIGAMHARAAYGVRRVALIDFDVHHGQGTQAVVEPDPDLFYASTH-QYPLYPGTGSARE-RGVAGNVVNVPLSAGSGSA-AFRAAWTDRLLPALDDFAPELVIVSAGFDAHRRDPLAQLDVETEDFVWLTEELLAIAGRHA-------GGRLVSVLEGGYDLAALAESVAAHVRALMRA 309          
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|652385055|ref|WP_026780983.1| (acetoin utilization protein [Polaromonas sp. EUR3 1.2.1])

HSP 1 Score: 206.838 bits (525), Expect = 1.698e-61
Identity = 104/211 (49.29%), Postives = 141/211 (66.82%), Query Frame = 0
Query:    1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
            +   A++V+C  RP GHHA   ++MGFC  N A +AA+HAR ++GV+RVAV+D DVHHGNGTQ  F DDPDLFY S H    FYPGTG+++++ G  + +VN+P  +G GS+  FR   A+E+ P LR+F P+L+I+S GFDA   DPLG +    +D+ W +RE+ +V      R       +VVSILEGGY L AL + T AHVR L+G
Sbjct:  109 LANEADNVFCATRPCGHHAEADRAMGFCVFNQAAIAALHARQQHGVKRVAVVDFDVHHGNGTQHAFFDDPDLFYGSCHQS-PFYPGTGAQQES-GVANNIVNIPLPQGCGSA-MFRARMADEMLPALRRFSPDLLIISAGFDAHHLDPLGGLRFTDDDYYWITRELMKVAEETADR-------RVVSILEGGYSLEALASGTAAHVRALMG 309          
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1095249580|emb|SEP49837.1| (Acetoin utilization deacetylase AcuC [Rhodospirillales bacterium URHD0017])

HSP 1 Score: 206.068 bits (523), Expect = 2.975e-61
Identity = 107/210 (50.95%), Postives = 134/210 (63.81%), Query Frame = 0
Query:    1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLL 210
            M+G+A + +  VRPPGHHA+P+   GFC  N+  VAA HA+ARYG+ RVA+LD DVHHG GTQ     D +LFYASTH  Y  YPGTGS ++  G  + ++NVP   G GS E FR AWAE I P L +F PEL+I+S GFDA A DPL ++E+  EDF W + E   +         GR    VVS+LEGGYDL AL      HV+ L+
Sbjct:  109 MQGQARTAFAAVRPPGHHASPAVPGGFCLFNNVAVAARHAQARYGIERVAILDFDVHHGQGTQAVVEPDRNLFYASTH-QYPLYPGTGSPRE-HGVANNVINVPLPAGAGSKE-FRAAWAERILPTLNRFAPELVIISAGFDAHAADPLAQLEVETEDFIWLTEEFLAIADHHS---KGR----VVSVLEGGYDLDALAESVSTHVQTLM 308          
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1084647571|gb|OGO96135.1| (acetoin utilization protein [Curvibacter sp. GWA2_64_110])

HSP 1 Score: 206.068 bits (523), Expect = 3.107e-61
Identity = 106/208 (50.96%), Postives = 139/208 (66.83%), Query Frame = 0
Query:    4 RAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
            +A +V+C  RP GHHA   ++MGFC  N A +AA+HAR ++G++RVAV+D DVHHGNGTQ  F DDPDLFY S H G  FYPGTG+R +  G    +VN+PF  G GS+  FR A ++ + P LR+F PEL+I+S GFDA   DPLG ++   +D+ W +RE+ +V        GGR    VVS+LEGGY L  L + T AHVR L+G
Sbjct:  112 QARNVFCATRPCGHHAEADKAMGFCVFNQAAIAAIHARQQHGIQRVAVVDFDVHHGNGTQSSFYDDPDLFYGSCHQGQ-FYPGTGARHE-TGVAHNIVNMPFPRGTGSA-AFRAAMSDVLLPALREFAPELLIISAGFDAHHLDPLGGLKFTDDDYHWITRELLQVADETA---GGR----VVSVLEGGYSLEGLASGTAAHVRALMG 309          
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1200226859|gb|OUT50899.1| (acetoin utilization protein [Alphaproteobacteria bacterium TMED8])

HSP 1 Score: 205.297 bits (521), Expect = 6.173e-61
Identity = 104/212 (49.06%), Postives = 141/212 (66.51%), Query Frame = 0
Query:    1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGA 212
            ++G+A + +C VRPPGHHA  +Q+MGFC +N A +AA+HAR+++ ++RVAV+D DVHHGNGTQ  F  D  LFYAS+H  +  YPGTG + +  G +  +VNVP   G GSSE FR+A+ E I P LR F PE++I+S GFDA  +DPL ++ ++ ED+ W + E+  V     GR        +VS+LEGGYDL AL     AHV  LL A
Sbjct:  108 IDGKARNAFCAVRPPGHHAESNQAMGFCLLNSAAIAAVHARSKHQMKRVAVVDFDVHHGNGTQHTFETDSGLFYASSH-QWPAYPGTGLKTET-GVDGNIVNVPLSPGSGSSE-FRKAYTEIIVPALRSFNPEIMIISAGFDAHIQDPLAQLNVKTEDYGWLTEELIDVAKCCDGR--------IVSLLEGGYDLKALRESVQAHVSVLLKA 308          
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1054951978|ref|WP_066706631.1| (acetoin utilization protein [Curvibacter delicatus])

HSP 1 Score: 205.297 bits (521), Expect = 7.131e-61
Identity = 105/208 (50.48%), Postives = 139/208 (66.83%), Query Frame = 0
Query:    4 RAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
            +A++V+C  RP GHHA   ++MGFC  N A +AA+HAR ++G++RVAV+D DVHHGNGTQ+ F DDPDLFY S H G  FYPGTG+R +  G    +VNVPF  G GS+  FR A  + + P LR+F PEL+I+S GFDA   DPLG ++   +D+ W +RE+  V       +G     +VVS+LEGGY L  L + T AHVR L+G
Sbjct:  112 QAKNVFCATRPCGHHAEADKAMGFCVFNQAAIAALHARQQHGLQRVAVVDFDVHHGNGTQNSFYDDPDLFYGSCHQGQ-FYPGTGARHE-TGVAHNIVNVPFPRGTGSA-AFRAAMTDVMLPALREFAPELLIISAGFDAHQLDPLGGLQFTDDDYHWITRELMAVADETA--QG-----RVVSVLEGGYSLEGLASGTAAHVRALMG 309          
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1082782486|gb|OGA99619.1| (acetoin utilization protein [Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11])

HSP 1 Score: 204.912 bits (520), Expect = 8.848e-61
Identity = 104/211 (49.29%), Postives = 139/211 (65.88%), Query Frame = 0
Query:    1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
            +   A++V+C  RP GHHA   ++MGFC  N A +AA+HAR ++GV+RVAV+D DVHHGNGTQ  F  DPDLFY S H    FYPGTG ++++ G  + +VN+P  +G GS+  FR   A+E+ P LR+F PEL+I+S GFDA   DPLG +    +D+ W +RE+ +V     GR       +VVSILEGGY L  L + T AHVR L+G
Sbjct:  109 LANEADNVFCATRPCGHHAEADRAMGFCVFNQAAIAALHARHQHGVKRVAVVDFDVHHGNGTQHAFFGDPDLFYGSCHQS-PFYPGTGEQQES-GVANNIVNIPLPQGCGSA-MFRARMADEMLPALRRFSPELLIISAGFDAHHLDPLGGLRFTDDDYHWITRELMKVAEESAGR-------RVVSILEGGYSLEGLASGTAAHVRALMG 309          
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|497226826|ref|WP_009541088.1| (acetylspermidine deacetylase [Caenispirillum salinarum] >gi|425880913|gb|EKV29607.1| Acetylspermidine deacetylase [Caenispirillum salinarum AK4])

HSP 1 Score: 202.986 bits (515), Expect = 4.526e-60
Identity = 104/210 (49.52%), Postives = 141/210 (67.14%), Query Frame = 0
Query:    2 EGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
            +G   + +C VRPPGHHA    +MGFC  N+A + A HARA +G++RVAV+D DVHHGNGTQ  F DDPD+FYASTH  +  +P +G+  +  G  D +VNVP     G  E FRQA ++EI P+LR+F P+LII+S GFDA A DP+  +  + +DF W ++E+  +       +   EG +VVS+LEGGYD+ AL  CT+AHVR L+G
Sbjct:  109 KGEVRNAFCPVRPPGHHAEREMAMGFCVFNNAAIGAYHARAEHGLKRVAVIDWDVHHGNGTQHIFWDDPDMFYASTH-QFPQWPNSGAPAE-TGAHDNIVNVPLPVRSGGDE-FRQAMSDEILPRLREFDPDLIIISCGFDAHASDPMAYLLFQVQDFVWATKELMAIA------DDCCEG-RVVSVLEGGYDIRALAGCTVAHVRALMG 308          
The following BLAST results are available for this feature:
BLAST of EWM26976.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109143|gb|EWM26976.1|0.000e+0100.00histone deacetylase superfamily protein [Nannochlo... [more]
gi|553179838|ref|XP_005852771.1|2.574e-12999.46histone deacetylase superfamily protein, partial [... [more]
gi|1056771891|ref|WP_068194554.1|4.439e-6551.42acetoin utilization protein [Rhodospirillaceae bac... [more]
gi|652385055|ref|WP_026780983.1|1.698e-6149.29acetoin utilization protein [Polaromonas sp. EUR3 ... [more]
gi|1095249580|emb|SEP49837.1|2.975e-6150.95Acetoin utilization deacetylase AcuC [Rhodospirill... [more]
gi|1084647571|gb|OGO96135.1|3.107e-6150.96acetoin utilization protein [Curvibacter sp. GWA2_... [more]
gi|1200226859|gb|OUT50899.1|6.173e-6149.06acetoin utilization protein [Alphaproteobacteria b... [more]
gi|1054951978|ref|WP_066706631.1|7.131e-6150.48acetoin utilization protein [Curvibacter delicatus... [more]
gi|1082782486|gb|OGA99619.1|8.848e-6149.29acetoin utilization protein [Burkholderiales bacte... [more]
gi|497226826|ref|WP_009541088.1|4.526e-6049.52acetylspermidine deacetylase [Caenispirillum salin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3707rna3707Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications