EWM26976.1, cds3698 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|585109143|gb|EWM26976.1| (histone deacetylase superfamily protein [Nannochloropsis gaditana]) HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0 Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
Query: 1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGATRAGEGEEGEGEGEGEGEGEEGPEVHLLPPVTMRDEEELVEGLKEVGLCVSGRRPGRNKVRATQKTTPTTICGCDMCFFGVWVYKVVQDLVM 304
MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGATRAGEGEEGEGEGEGEGEGEEGPEVHLLPPVTMRDEEELVEGLKEVGLCVSGRRPGRNKVRATQKTTPTTICGCDMCFFGVWVYKVVQDLVM
Sbjct: 1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGATRAGEGEEGEGEGEGEGEGEEGPEVHLLPPVTMRDEEELVEGLKEVGLCVSGRRPGRNKVRATQKTTPTTICGCDMCFFGVWVYKVVQDLVM 304
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|553179838|ref|XP_005852771.1| (histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295763|gb|EKU23062.1| histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 382.874 bits (982), Expect = 2.574e-129 Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0
Query: 1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCK 184
MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGC+
Sbjct: 214 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCE 397
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1056771891|ref|WP_068194554.1| (acetoin utilization protein [Rhodospirillaceae bacterium CCH5-H10]) HSP 1 Score: 216.083 bits (549), Expect = 4.439e-65 Identity = 109/212 (51.42%), Postives = 137/212 (64.62%), Query Frame = 0
Query: 1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGA 212
++GRA + + VRPPGHHATP GFC N+ + AMHARA YGVRRVA++D DVHHG GTQ DPDLFYASTH Y YPGTGS ++ +G +VNVP G GS+ FR AW + + P L F PEL+I+S GFDA DPL ++++ EDF W + E+ + GR G ++VS+LEGGYDLAAL AHVR L+ A
Sbjct: 108 LKGRARTAFAAVRPPGHHATPDVPGGFCLFNNVAIGAMHARAAYGVRRVALIDFDVHHGQGTQAVVEPDPDLFYASTH-QYPLYPGTGSARE-RGVAGNVVNVPLSAGSGSA-AFRAAWTDRLLPALDDFAPELVIVSAGFDAHRRDPLAQLDVETEDFVWLTEELLAIAGRHA-------GGRLVSVLEGGYDLAALAESVAAHVRALMRA 309
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|652385055|ref|WP_026780983.1| (acetoin utilization protein [Polaromonas sp. EUR3 1.2.1]) HSP 1 Score: 206.838 bits (525), Expect = 1.698e-61 Identity = 104/211 (49.29%), Postives = 141/211 (66.82%), Query Frame = 0
Query: 1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
+ A++V+C RP GHHA ++MGFC N A +AA+HAR ++GV+RVAV+D DVHHGNGTQ F DDPDLFY S H FYPGTG+++++ G + +VN+P +G GS+ FR A+E+ P LR+F P+L+I+S GFDA DPLG + +D+ W +RE+ +V R +VVSILEGGY L AL + T AHVR L+G
Sbjct: 109 LANEADNVFCATRPCGHHAEADRAMGFCVFNQAAIAALHARQQHGVKRVAVVDFDVHHGNGTQHAFFDDPDLFYGSCHQS-PFYPGTGAQQES-GVANNIVNIPLPQGCGSA-MFRARMADEMLPALRRFSPDLLIISAGFDAHHLDPLGGLRFTDDDYYWITRELMKVAEETADR-------RVVSILEGGYSLEALASGTAAHVRALMG 309
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1095249580|emb|SEP49837.1| (Acetoin utilization deacetylase AcuC [Rhodospirillales bacterium URHD0017]) HSP 1 Score: 206.068 bits (523), Expect = 2.975e-61 Identity = 107/210 (50.95%), Postives = 134/210 (63.81%), Query Frame = 0
Query: 1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLL 210
M+G+A + + VRPPGHHA+P+ GFC N+ VAA HA+ARYG+ RVA+LD DVHHG GTQ D +LFYASTH Y YPGTGS ++ G + ++NVP G GS E FR AWAE I P L +F PEL+I+S GFDA A DPL ++E+ EDF W + E + GR VVS+LEGGYDL AL HV+ L+
Sbjct: 109 MQGQARTAFAAVRPPGHHASPAVPGGFCLFNNVAVAARHAQARYGIERVAILDFDVHHGQGTQAVVEPDRNLFYASTH-QYPLYPGTGSPRE-HGVANNVINVPLPAGAGSKE-FRAAWAERILPTLNRFAPELVIISAGFDAHAADPLAQLEVETEDFIWLTEEFLAIADHHS---KGR----VVSVLEGGYDLDALAESVSTHVQTLM 308
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1084647571|gb|OGO96135.1| (acetoin utilization protein [Curvibacter sp. GWA2_64_110]) HSP 1 Score: 206.068 bits (523), Expect = 3.107e-61 Identity = 106/208 (50.96%), Postives = 139/208 (66.83%), Query Frame = 0
Query: 4 RAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
+A +V+C RP GHHA ++MGFC N A +AA+HAR ++G++RVAV+D DVHHGNGTQ F DDPDLFY S H G FYPGTG+R + G +VN+PF G GS+ FR A ++ + P LR+F PEL+I+S GFDA DPLG ++ +D+ W +RE+ +V GGR VVS+LEGGY L L + T AHVR L+G
Sbjct: 112 QARNVFCATRPCGHHAEADKAMGFCVFNQAAIAAIHARQQHGIQRVAVVDFDVHHGNGTQSSFYDDPDLFYGSCHQGQ-FYPGTGARHE-TGVAHNIVNMPFPRGTGSA-AFRAAMSDVLLPALREFAPELLIISAGFDAHHLDPLGGLKFTDDDYHWITRELLQVADETA---GGR----VVSVLEGGYSLEGLASGTAAHVRALMG 309
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1200226859|gb|OUT50899.1| (acetoin utilization protein [Alphaproteobacteria bacterium TMED8]) HSP 1 Score: 205.297 bits (521), Expect = 6.173e-61 Identity = 104/212 (49.06%), Postives = 141/212 (66.51%), Query Frame = 0
Query: 1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLGA 212
++G+A + +C VRPPGHHA +Q+MGFC +N A +AA+HAR+++ ++RVAV+D DVHHGNGTQ F D LFYAS+H + YPGTG + + G + +VNVP G GSSE FR+A+ E I P LR F PE++I+S GFDA +DPL ++ ++ ED+ W + E+ V GR +VS+LEGGYDL AL AHV LL A
Sbjct: 108 IDGKARNAFCAVRPPGHHAESNQAMGFCLLNSAAIAAVHARSKHQMKRVAVVDFDVHHGNGTQHTFETDSGLFYASSH-QWPAYPGTGLKTET-GVDGNIVNVPLSPGSGSSE-FRKAYTEIIVPALRSFNPEIMIISAGFDAHIQDPLAQLNVKTEDYGWLTEELIDVAKCCDGR--------IVSLLEGGYDLKALRESVQAHVSVLLKA 308
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1054951978|ref|WP_066706631.1| (acetoin utilization protein [Curvibacter delicatus]) HSP 1 Score: 205.297 bits (521), Expect = 7.131e-61 Identity = 105/208 (50.48%), Postives = 139/208 (66.83%), Query Frame = 0
Query: 4 RAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
+A++V+C RP GHHA ++MGFC N A +AA+HAR ++G++RVAV+D DVHHGNGTQ+ F DDPDLFY S H G FYPGTG+R + G +VNVPF G GS+ FR A + + P LR+F PEL+I+S GFDA DPLG ++ +D+ W +RE+ V +G +VVS+LEGGY L L + T AHVR L+G
Sbjct: 112 QAKNVFCATRPCGHHAEADKAMGFCVFNQAAIAALHARQQHGLQRVAVVDFDVHHGNGTQNSFYDDPDLFYGSCHQGQ-FYPGTGARHE-TGVAHNIVNVPFPRGTGSA-AFRAAMTDVMLPALREFAPELLIISAGFDAHQLDPLGGLQFTDDDYHWITRELMAVADETA--QG-----RVVSVLEGGYSLEGLASGTAAHVRALMG 309
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|1082782486|gb|OGA99619.1| (acetoin utilization protein [Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11]) HSP 1 Score: 204.912 bits (520), Expect = 8.848e-61 Identity = 104/211 (49.29%), Postives = 139/211 (65.88%), Query Frame = 0
Query: 1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
+ A++V+C RP GHHA ++MGFC N A +AA+HAR ++GV+RVAV+D DVHHGNGTQ F DPDLFY S H FYPGTG ++++ G + +VN+P +G GS+ FR A+E+ P LR+F PEL+I+S GFDA DPLG + +D+ W +RE+ +V GR +VVSILEGGY L L + T AHVR L+G
Sbjct: 109 LANEADNVFCATRPCGHHAEADRAMGFCVFNQAAIAALHARHQHGVKRVAVVDFDVHHGNGTQHAFFGDPDLFYGSCHQS-PFYPGTGEQQES-GVANNIVNIPLPQGCGSA-MFRARMADEMLPALRRFSPELLIISAGFDAHHLDPLGGLRFTDDDYHWITRELMKVAEESAGR-------RVVSILEGGYSLEGLASGTAAHVRALMG 309
BLAST of EWM26976.1 vs. NCBI_GenBank
Match: gi|497226826|ref|WP_009541088.1| (acetylspermidine deacetylase [Caenispirillum salinarum] >gi|425880913|gb|EKV29607.1| Acetylspermidine deacetylase [Caenispirillum salinarum AK4]) HSP 1 Score: 202.986 bits (515), Expect = 4.526e-60 Identity = 104/210 (49.52%), Postives = 141/210 (67.14%), Query Frame = 0
Query: 2 EGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRVGGRKGGREGGREGCKVVSILEGGYDLAALGACTIAHVRGLLG 211
+G + +C VRPPGHHA +MGFC N+A + A HARA +G++RVAV+D DVHHGNGTQ F DDPD+FYASTH + +P +G+ + G D +VNVP G E FRQA ++EI P+LR+F P+LII+S GFDA A DP+ + + +DF W ++E+ + + EG +VVS+LEGGYD+ AL CT+AHVR L+G
Sbjct: 109 KGEVRNAFCPVRPPGHHAEREMAMGFCVFNNAAIGAYHARAEHGLKRVAVIDWDVHHGNGTQHIFWDDPDMFYASTH-QFPQWPNSGAPAE-TGAHDNIVNVPLPVRSGGDE-FRQAMSDEILPRLREFDPDLIIISCGFDAHASDPMAYLLFQVQDFVWATKELMAIA------DDCCEG-RVVSVLEGGYDIRALAGCTVAHVRALMG 308 The following BLAST results are available for this feature:
BLAST of EWM26976.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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