rna3704, rna3704 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3704
Unique Name	rna3704
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3167
Alignment location	CM002461.1:1017257..1018553 -

Link to JBrowse

Properties


Property Name	Value
Product	brain protein 44-like protein
Orig transcript id	gnl\|cribi\|Naga_100127g18.6220.mrna
Orig protein id	gnl\|cribi\|Naga_100127g18.6220
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1017257..1018553 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100127g18	gene3568	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3704	rna3704-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26988.1	cds3695	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:1017257..1018553-
coding sequence from alignment at CM002461.1:1017257..1018553-

mRNA sequence

>rna3704 ID=rna3704|Name=rna3704|organism=Nannochloropsis gaditana|type=mRNA|length=3167bp
TGCATGTACCGTGTTGTTGCGCTCTTCGGTCAAGGCAGGGGACGACGAGC
TTAACTGGCGCACCCCGTGACGAGAGCAGGGGGTGGAGTGGGCGAATACT
ACAACACACCGCCATCAACACCTTCAGAAGCTGAGCAAATCAAGCGGTAA
TCAGAGAGAAGCTTTCGCATCGCTTGTCATGTGCACAAACGAGCTCATGA
CGGGATTTGTGGAGGCGCCTACAGCAATGTGTTCCGGCAGTCACTTTTCG
GCCAAGGCGCCGGTTGGCGGCAACGAGCTCAAGGACCTCCAGTGCGACGC
CCAGAGCATGTGCAAACCCTGTTTTTTGACTCGAGATGCGTCTGTCAATA
CCGCCGCGTCCATCACGGACGACGACGAGGACGAGGATGACGAGGGCTGT
GCATGTACTTTGGAACGGGGCGGGGCCTCCATGACCCGGAGCTTGCTGGA
GGACGACGCGGCTACCCTTTTCGGATTAGGCGGTTGCCTGGACCTGCTCG
CGAATTCCAAGCATCGTCTCGGAGCCAGACTGACTTCCAGGACAGGTTGT
GAAGTAGTGGAAAAGGACAGCACGACGCTGCCTGCGTGGGCCCCTCTTCC
CGCGCCACCGCCACAGCTTTGGCGACAGCGCTCAGCGCAAGAAATTCGCA
AGCACTACGCGGTCAAGCTGGGCATTCGGACAATGGGCACAGGCCATCTC
GTGGCCGGGCTAAAAGCTTCGCAATGGCGAACGTCCTGTCTGCCCGAAGG
CGTCCGTCCGGTGATCGAAAAATTGAAAGGCCAGCCCGAGTCCTACGGAG
GATTCCTCCGCCTGATGCGGAGACAAACCTTGGTGGGAAAAGGGCAGCAG
GCACCAACGGAGGGAAGTGCACCGACTGCTTACCCAACCTCCCACGAGTC
GCGGTCTTCGCTTTCCTCGACAGACGACCGGGCGCCTGCCTGTGCCGCCT
GCCTTGCCCTCCCCTCGGACCGTGCGCCCAAACAGCGGGCTTTACCCGTG
CCTGTTCCTGGACGCGCCAGCGTGGACGGCGCGATCCAACTCCGGCCTGC
GATGGACTATGTGGGAGGAAGCGGCGGGGACGACGAGAGCGACGGCTGCG
GTTCCTTCTCCTCCTCGGAGGCGTCGGGCTACCTGAGCTGCAGCTCCTGC
TCTCGAACCAGCCCTTCTTTTCCCCTACCCGCGTTCCAGTACCCCTTGGG
GACTGGGGCGCCGCACAATATACGCGATGGGAGGCGGGTTGGCGGCTTGA
AGCGCGAGCCCAAGCTTGCAGTACCCCAGGTGAGCCACAGCGCGGGCGAG
TCTGGGACGGGCAAGGCCCTTCCGTCCCCGTCCTCCCTCCCTCCCTCCTC
CTTCCCCTCCCCCTCGACCTCGTCTTTTGCGATGCGGTGCCTGATGGACG
CGGCGAACAGCCCCGCGGCCTCCACCAGCGTTGGGGCCATGAGCCTCACG
CCTGCCTCCTGTTCCTTCTTGTCCCGGGCTTCCTCCCCGCCCCATGCCCA
CACCGACCGGCAGGCCAGCCGCCTGGCCGTGTCCCCCGCCCCTCTTTCTC
GACGTCGGATTGCCTTCCACGAAGACGTCTGCGTGGTCCACATTCCTTCC
CATACCGAGTACAGCCGGCGCATCAAGTCGCAGTACTGGACCAGCCCGGC
CGAAATCTACGAGATGGCGTGTCGGAACCTGGTAGAATTCGAGGCGGAAG
GGTACTCGTGGGAGGCAGCTTTGGAAGAGGAGCACCTGTACTGGTGCCCA
GACACGGCCAGTTTTGTGCACCCGGCCCATATTATGATGGAAGGGCAAGA
GGATTGGAGGGAGGGAAGAAGGGAGGGTTGAAGCCTGGATATGGGAGGGA
AGTGACGCTGGCGGGAGGGTAGGCGGGAGGGAGAGGAAGTGGGAAGAAGT
AAGGCATGTGGACGATGTGTGTTTTGAAAGTAAGATTTAAATTGAAGCGG
CGCTGGGCGCAAAACAACAACGCCAGCCATGGCAGTAAATGTAGCACGTA
AAACAGTCAGCATGGTCGCAGCGAGAGTCATGAATGCGAGCCCGCGCTGA
AGAGTATTGCATCATGTGAGACGATCACTTTCGACCCAGCGTCTGATCAG
ACTGCCCTCCGCAAGGTGGGGAGAAAATTATCGTGAGAGCAACGACTGCA
TAGCAGGCCTCTGAGAAGGGGGCGGCACAAACGAAAGGAAAGTACCTGAA
TGGATTGAAACCATTGCATAATGCAGGGGAACGCGAAGGGGGAGGTAAAA
GACCTTGAGGGGCAGGTGCGGGGGGGTTATGGCGGGCACTGAAGGCAAAA
GGCAAGACATTGGGGATGTAGGAACGGAAGAGTTGGGAGGGTTTGTTAAT
TGCGGGTATGATGACATGGCATGTCTAAGCCGCGTTGAAGTTCGAGGAAG
GTAAAGCCGGGCGTGTAGTCGGCCGGACGCTGATGGCGGCATACGCCTGG
GCGGTGCGCCTGACTTGATGGGGCCGGAAGGTCCGTGAGACAGCTGGAAA
GGGGTGGATGGAAGGAGTATAAGAAAAAGGAGGGAGGGTATCGTGGGATC
CTGCGCTTGCTTGTGCTCGGAGTGTATCTGTAGACACGTAACGCATGTAA
AATCGTGGTTTATTTTTAAATTAGTGGACTGGAGGCTGCTTTAGGCATAC
AACGAGTGAAGAGGAAGGTGGATGGTAGGCGGGATGCAATTTGCCGGGGT
CGCTCTTTTTGCCTCTGTATGCATGTGCATATTATGATAATCATGTCATC
TGTTGAGGGACGTTTTTTGCAATTGGTTGGCCGTTGAGACAAAGACTGGT
GGACTGGAATATTTGAAACAAAGTTGCTGCTGAGTCGACTGAAAATGTAC
GGGGGGAAAGCCTGATCCGATTTTCGAGTGATTGAATTGAATGGCTGTAA
ATGTCCGGAGGGAGTGACCCTGGCATTGGGAGGGAAGACCTAAAGGTGAA
CAGTTTTGTTAAAGGCTTTTGTGGGAAGAGAGAAAGGAAGGCATAGGACA
GGAAGGCAATAATTACTGATTCGATTTGTGCATGCAAATAATAAACGAAA
GGGGGGCTAGAGTCCCCGACAAGCGAGTATAAGTGGCTGTCGACACGGTC
GTGGTCCGCATCCTCCCCAAAAGGAAACTCCATCTATCCATCATCTCGGA
CGTGGTGGATATTCCAC

protein sequence of rna3704

>rna3704-protein ID=rna3704-protein|Name=rna3704|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTG
VLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKG
KKS

mRNA from alignment at CM002461.1:1017257..1018553-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3704 ID=rna3704|Name=rna3704|organism=Nannochloropsis gaditana|type=mRNA|length=1297bp|location=Sequence derived from alignment at CM002461.1:1017257..1018553- (Nannochloropsis gaditana)
CATGTCAAGCGTTTCCGCTTTCACACGCATAAAGCCGGGCATTTCATGCG
TCCTAGTGCAAATGCTACATCACGGTCTGCTGGCAAGGCCGGCAACTCGA
CCCATTTAGCACCCTTATAGGCCTTTACTTAGACTCTTTTGAGCAACGCA
ACAACAAAAAGGCAACCACATATCTCACCAATCTCTCCACCTGGCACACG
TTCGCATCAAATCATTGCTTCCTACATAGTGACCAGTTGGCTTGTGCAAG
GATTAGCCATCACGGTGCGCTGGCTGGTTAGCTGCGTCCATATCAAAGCG
GCTAGCAGCAAGCATCGGGGATCATTTCCTTTTTCCCGAAGGCCCTGCAT
TTCCAAACCAGAACCTAGAATATGTCAGCGCGGCTCGTACAATTTATAAA
CAGTCCCACGGGGCCCAAAACCACGCATTTCTGGGGGCCGGTGGCGAATT
GGGGCTTTGTGCTGGCGGTAAGGAGAGAGTGAAGATCGTAGACAGGATGT
GACGGGAAAAATATTCAAAGGGACGGTACAACCGCATGTTTCTATCACAT
GTTGAGTAGGCAATGATTGATTCGAGGAAGCCACCTGAGACAATCTCAGC
CAAAATGACGGGAGGTACGTCCACATGCGACGAGTCAGGGGTGTTACGCA
GTGCCTCCACCTTCTCCTTTTGTGTTTGTAACGTGTGAGTGGAGGGCCCG
TTTTTCTTGTGCTAACGCCTTGGACTCAAACGACAGCCAGAGCGGTAGAT
TAAGGCGTGAGAATGGTGCGGTCACAATGAACAACCTCTGTCTTGACTCT
TTTTTTTTCTCCCATCTGCAGTCCTCTCAGTCTACAGCCTGTTGTTCATG
CGGTTTGCATGGATGGTCCAACCCCGCAATTACCTCCTTCTCGCTTGCCA
TGCCTCCAACGAGGTCGCGCAGCTTTATCAACTGAGCCGAAGAATCAGCT
ATGAGTGAGTATGTAGGAAGGAAGGAGGGGAGGGAGGGCGGAGGGGAGGC
GGAAGCGTGTGTTGCGGTGCCGTTCGTGCACGTGCACGCGCCTGGGCTTA
CTTCGGACATTTCCACGTCTCTTTCCTCTACACAGTATGGAGCAGAAGGG
AAAGAAATCGTAGAGAATAAAGAATTTGGAAGACTGACGGGGAGCAGGTT
CGCACGCTGCAAAAGACGGGCGTGACCATTGGCGTTCGGCATCTCAAAAA
GGAAGCTCTTGTGGACCGATATGCGGGCACATGGAAAGGTGATGAAAGAA
AACAACAACCGAAAAAAATATGCGTGCCGGGAAGAAAATCGCAGTGG

Coding sequence (CDS) from alignment at CM002461.1:1017257..1018553-

>rna3704 ID=rna3704|Name=rna3704|organism=Nannochloropsis gaditana|type=CDS|length=1248bp|location=Sequence derived from alignment at CM002461.1:1017257..1018553- (Nannochloropsis gaditana)
TATGGAGCAGAAGGGAAAGAAATCGTAGTCCTCTCAGTCTACAGCCTGTT
GTTCATGCGGTTTGCATGGATGGTCCAACCCCGCAATTACCTCCTTCTCG
CTTGCCATGCCTCCAACGAGGTCGCGCAGCTTTATCAACTGAGCCGAAGA
ATCAGCTATGAGCAATGATTGATTCGAGGAAGCCACCTGAGACAATCTCA
GCCAAAATGACGGGAGATGTCAGCGCGGCTCGTACAATTTATAAACAGTC
CCACGGGGCCCAAAACCACGCATTTCTGGGGGCCGGTGGCGAATTGGGGC
TTTGTGCTGGCGTATGGAGCAGAAGGGAAAGAAATCGTAGTCCTCTCAGT
CTACAGCCTGTTGTTCATGCGGTTTGCATGGATGGTCCAACCCCGCAATT
ACCTCCTTCTCGCTTGCCATGCCTCCAACGAGGTCGCGCAGCTTTATCAA
CTGAGCCGAAGAATCAGCTATGAGCAATGATTGATTCGAGGAAGCCACCT
GAGACAATCTCAGCCAAAATGACGGGAGATGTCAGCGCGGCTCGTACAAT
TTATAAACAGTCCCACGGGGCCCAAAACCACGCATTTCTGGGGGCCGGTG
GCGAATTGGGGCTTTGTGCTGGCGTATGGAGCAGAAGGGAAAGAAATCGT
AGTCCTCTCAGTCTACAGCCTGTTGTTCATGCGGTTTGCATGGATGGTCC
AACCCCGCAATTACCTCCTTCTCGCTTGCCATGCCTCCAACGAGGTCGCG
CAGCTTTATCAACTGAGCCGAAGAATCAGCTATGAGCAATGATTGATTCG
AGGAAGCCACCTGAGACAATCTCAGCCAAAATGACGGGAGATGTCAGCGC
GGCTCGTACAATTTATAAACAGTCCCACGGGGCCCAAAACCACGCATTTC
TGGGGGCCGGTGGCGAATTGGGGCTTTGTGCTGGCGTATGGAGCAGAAGG
GAAAGAAATCGTAGTCCTCTCAGTCTACAGCCTGTTGTTCATGCGGTTTG
CATGGATGGTCCAACCCCGCAATTACCTCCTTCTCGCTTGCCATGCCTCC
AACGAGGTCGCGCAGCTTTATCAACTGAGCCGAAGAATCAGCTATGAGCA
ATGATTGATTCGAGGAAGCCACCTGAGACAATCTCAGCCAAAATGACGGG
AGATGTCAGCGCGGCTCGTACAATTTATAAACAGTCCCACGGGGCCCAAA
ACCACGCATTTCTGGGGGCCGGTGGCGAATTGGGGCTTTGTGCTGGCG

Synonyms

Publications