EWM26988.1, cds3695 (CDS) Nannochloropsis gaditana

Overview
NameEWM26988.1
Unique Namecds3695
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1018087..1018182 -
Alignment locationCM002461.1:1017940..1017994 -
Alignment locationCM002461.1:1017600..1017732 -
Alignment locationCM002461.1:1017441..1017468 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26988.1
Productbrain protein 44-like protein
Orig transcript idgnl|cribi|Naga_100127g18.6220.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1018087..1018182 -
CM002461.1supercontigCM002461.1:1017940..1017994 -
CM002461.1supercontigCM002461.1:1017600..1017732 -
CM002461.1supercontigCM002461.1:1017441..1017468 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006850mitochondrial pyruvate transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
GO:0005743mitochondrial inner membrane
Vocabulary: INTERPRO
TermDefinition
IPR005336MPC
Homology
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|585109155|gb|EWM26988.1| (brain protein 44-like protein [Nannochloropsis gaditana])

HSP 1 Score: 217.624 bits (553), Expect = 7.748e-72
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKKS 103
            MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKKS
Sbjct:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKKS 103          
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|301110196|ref|XP_002904178.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096304|gb|EEY54356.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 162.155 bits (409), Expect = 8.304e-50
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 0
Query:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKK 102
            M++RL  FINSPTGPKTTHFWGPVANWGFVLAAM D +KP + IS  MT  LS+YSL+FMRFAWMV+PRNYLLLACHASNE AQLYQL R + Y   +K  +
Sbjct:    3 MASRLRYFINSPTGPKTTHFWGPVANWGFVLAAMADMQKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNETAQLYQLQRGVRYQASKKAAE 104          
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|970655242|gb|KUF93431.1| (Mitochondrial pyruvate carrier 1 [Phytophthora nicotianae] >gi|970660779|gb|KUF98302.1| hypothetical protein AM588_10009697 [Phytophthora nicotianae])

HSP 1 Score: 162.155 bits (409), Expect = 8.967e-50
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 0
Query:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKK 102
            M++RL  FINSPTGPKTTHFWGPVANWGFV+AAM D RKP + IS  MT  LS+YSL+FMRFAWMV+PRNYLLLACHASNE AQLYQL R I +   +K  +
Sbjct:    3 MASRLRYFINSPTGPKTTHFWGPVANWGFVVAAMADMRKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNEAAQLYQLQRGIRFQASKKAAE 104          
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|695456775|ref|XP_009537035.1| (hypothetical protein PHYSODRAFT_288894 [Phytophthora sojae] >gi|348667644|gb|EGZ07469.1| hypothetical protein PHYSODRAFT_288894 [Phytophthora sojae])

HSP 1 Score: 161.384 bits (407), Expect = 1.586e-49
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 0
Query:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKK 102
            M++RL  FINSPTGPKTTHFWGPVANWGFVLAAM D +KP + IS  MT  LS+YSL+FMRFAWMV+PRNYLLLACHASNE AQLYQL R + Y   +K  +
Sbjct:    3 MASRLRYFINSPTGPKTTHFWGPVANWGFVLAAMADMQKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNETAQLYQLQRGLRYQASKKSAE 104          
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|570994012|gb|ETP51226.1| (hypothetical protein F442_03602 [Phytophthora parasitica P10297])

HSP 1 Score: 162.925 bits (411), Expect = 1.605e-49
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0
Query:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKKS 103
            M++RL  FINSPTGPKTTHFWGPVANWGFV+AAM D RKP + IS  MT  LS+YSL+FMRFAWMV+PRNYLLLACHASNE AQLYQL R I +   +K  ++
Sbjct:   45 MASRLRYFINSPTGPKTTHFWGPVANWGFVVAAMADMRKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNEAAQLYQLQRGIRFQASKKAAEN 147          
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|675183885|ref|XP_008900827.1| (hypothetical protein PPTG_08478 [Phytophthora parasitica INRA-310] >gi|566030515|gb|ETI53426.1| hypothetical protein F443_03622 [Phytophthora parasitica P1569] >gi|567968117|gb|ETK93267.1| hypothetical protein L915_03516 [Phytophthora parasitica] >gi|567996567|gb|ETL46674.1| hypothetical protein L916_03467 [Phytophthora parasitica] >gi|568025817|gb|ETL99819.1| hypothetical protein L917_03387 [Phytophthora parasitica] >gi|568056265|gb|ETM52977.1| hypothetical protein L914_03491 [Phytophthora parasitica] >gi|568099034|gb|ETN13752.1| hypothetical protein PPTG_08478 [Phytophthora parasitica INRA-310] >gi|570334203|gb|ETO82151.1| hypothetical protein F444_03691 [Phytophthora parasitica P1976] >gi|570958235|gb|ETP23214.1| hypothetical protein F441_03617 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 162.54 bits (410), Expect = 1.714e-49
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 0
Query:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKK 102
            M++RL  FINSPTGPKTTHFWGPVANWGFV+AAM D RKP + IS  MT  LS+YSL+FMRFAWMV+PRNYLLLACHASNE AQLYQL R I +   +K  +
Sbjct:   45 MASRLRYFINSPTGPKTTHFWGPVANWGFVVAAMADMRKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNEAAQLYQLQRGIRFQASKKAAE 146          
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|953489134|emb|CEG47408.1| (brain protein 44-like protein [Plasmopara halstedii])

HSP 1 Score: 160.614 bits (405), Expect = 3.248e-49
Identity = 73/103 (70.87%), Postives = 83/103 (80.58%), Query Frame = 0
Query:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKKS 103
            M++RL  FINSPTGPKTTHFWGPVANWGFVLAAM D +KP + IS  MT  LS+YSL+FMRFAWMV+PRNYLLLACHASNE AQLYQL R + +    K  K+
Sbjct:    1 MASRLRYFINSPTGPKTTHFWGPVANWGFVLAAMADMQKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNETAQLYQLQRGLRFQASTKEAKT 103          
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|1214710970|gb|OWZ22014.1| (hypothetical protein PHMEG_0003330 [Phytophthora megakarya])

HSP 1 Score: 160.229 bits (404), Expect = 4.304e-49
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 0
Query:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKK 102
            M++RL  FINSPTGPKTTHFWGPVANWGFVLAAM D +KP + IS  MT  LS+YSL+FMRFAWMV+PRNYLLLACHASNE AQLYQL R + +   +K  +
Sbjct:    3 MASRLRYFINSPTGPKTTHFWGPVANWGFVLAAMADMQKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNETAQLYQLQRGLRFQASKKAAE 104          
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|159483257|ref|XP_001699677.1| (hypothetical protein CHLREDRAFT_182136 [Chlamydomonas reinhardtii] >gi|158281619|gb|EDP07373.1| predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 157.532 bits (397), Expect = 5.825e-48
Identity = 72/103 (69.90%), Postives = 82/103 (79.61%), Query Frame = 0
Query:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKKS 103
            M++R +Q++NSPTGPKTTHFWGPVANWGFVLA + D RK PE IS  MTGV+ VYS+LFMRFAW VQPRNYLLLACHASNE  QLYQLSR  S+    K   +
Sbjct:    1 MASRFMQWVNSPTGPKTTHFWGPVANWGFVLAGLADMRKDPEYISPNMTGVMCVYSVLFMRFAWEVQPRNYLLLACHASNETVQLYQLSRWYSWSNSAKAADA 103          
BLAST of EWM26988.1 vs. NCBI_GenBank
Match: gi|635370844|emb|CCI41107.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 154.066 bits (388), Expect = 1.102e-46
Identity = 69/102 (67.65%), Postives = 81/102 (79.41%), Query Frame = 0
Query:    2 SARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGKKS 103
             A   +F+N PTGP+TTHFWGPVANWGFVLAA++D +KPPE IS  MT  +SVYS+LFMRFAWMVQPRNYLLLACH SNE AQLYQL R + +    K ++S
Sbjct:    3 GAHFRRFLNHPTGPRTTHFWGPVANWGFVLAAIMDMKKPPEMISVNMTMAMSVYSILFMRFAWMVQPRNYLLLACHGSNETAQLYQLQRALRHRFGIKSEQS 104          
The following BLAST results are available for this feature:
BLAST of EWM26988.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109155|gb|EWM26988.1|7.748e-72100.00brain protein 44-like protein [Nannochloropsis gad... [more]
gi|301110196|ref|XP_002904178.1|8.304e-5071.57conserved hypothetical protein [Phytophthora infes... [more]
gi|970655242|gb|KUF93431.1|8.967e-5071.57Mitochondrial pyruvate carrier 1 [Phytophthora nic... [more]
gi|695456775|ref|XP_009537035.1|1.586e-4971.57hypothetical protein PHYSODRAFT_288894 [Phytophtho... [more]
gi|570994012|gb|ETP51226.1|1.605e-4970.87hypothetical protein F442_03602 [Phytophthora para... [more]
gi|675183885|ref|XP_008900827.1|1.714e-4971.57hypothetical protein PPTG_08478 [Phytophthora para... [more]
gi|953489134|emb|CEG47408.1|3.248e-4970.87brain protein 44-like protein [Plasmopara halstedi... [more]
gi|1214710970|gb|OWZ22014.1|4.304e-4970.59hypothetical protein PHMEG_0003330 [Phytophthora m... [more]
gi|159483257|ref|XP_001699677.1|5.825e-4869.90hypothetical protein CHLREDRAFT_182136 [Chlamydomo... [more]
gi|635370844|emb|CCI41107.1|1.102e-4667.65unnamed protein product [Albugo candida][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3704rna3704Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications