rna3702, rna3702 (mRNA) Nannochloropsis gaditana

Overview
Namerna3702
Unique Namerna3702
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1406
Alignment locationCM002461.1:1012089..1013580 -

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Properties
Property NameValue
Productemopamil binding protein
Orig transcript idgnl|cribi|Naga_100127g13.6216.mrna
Orig protein idgnl|cribi|Naga_100127g13.6216
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1012089..1013580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100127g13gene3566Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3702rna3702-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26984.1cds3693Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3702 ID=rna3702|Name=rna3702|organism=Nannochloropsis gaditana|type=mRNA|length=1406bp
CTAAACCTGCTAGCCATGTAGACTTTCTGGATTGCCATCATAATTCTTGA
TGTTGCCCTTTGTTTGAGACCCCTCCCTTCTCTTGTCTGATATTTCTTCT
CAGGACCTGCTCTCCGTGCTCCTCCCCGAAGCAAATGAAGAACGAGGCTT
CACAAGAGCTAGCGTCGGGCGCAGGGAATTTCAGAAATGGCAGTCGAATG
TCACCTCCTTTGTCTCGCTCACCCATGAACCGTGCATCGCCCCCCTCCAT
TCATGATCATGGTCGACATACGCCTCCGATTCCCGAAGCATCTCTTAAGA
ACATCGACCTTGGAGGCGGGCATGTAGCTCCTCATCAAGCAATAAGAAGG
CGGGACCACTTGTCGCCATCTTTTGTGCTGTCGAAGCAGTATCCAATACC
GGAAGTGCAGGAATTGACGGCCGTCGACGGAAGAGGACAGGGGGCTTCGT
CAGCATGGAGGCTCGCTTTAGCGCAACTCAAGCGTTTCGACATTGAATGG
GTAATCAGTTTTCTCCTCATAATTTTTACATGCTCAGCTACAGCCATTTT
TACGCGCGACAAGGGTTGGTTTCTCCTCACCGCGCCATTGGTGGGTTTTC
CATTGTCCAATGCGTTCGCGTCGTTCAACATCGGCCTCTCCACCTATGTA
GCCGAGGCTTACGGCGGTGACGAGCGTTTGACATTGTATCGACACGTGGG
GAGAATATCAGAGCTTTCTCCGCGCGCAGGGAGCATCGCAATATACCTAT
ACGTGTGCCTGGTCTTTTCATTGCTTCTATCGGTGATCCTGCTTTGGTAT
ATCGCCTTGTTCTACCAGTATTTGAAAAGCAGCGAGGTATTGCCCTCAAA
AGAGTCAGCTGTGCGACTGTTTGGTCTAGGTGCACTGACACTTGGGCTCC
TGCTGTCAGCGCTTGGCACAGGATCTTTTCGGGCCGTCATATGGAACGAT
ATGCGGCACCGTCGCAACAGCAGCGAAAGTGTGAATGGCGCTGACGCCTC
CCCGAGTTTCACAGACATTGATACGGGGGCACTAGCTCTTCGTAATGGGT
ACGCTTACGGTTCTACCGTCATTACCTGGCTCCTGTGGATCATCGTCGGC
TGTGTTTTCATCTCTCGCTCAAGCTGGTGGGCTAAAGGCGCGGGCATGGC
GGCGACACAGGCGCAAGCAGACATAGATATAGTCAATGATGACATGGCAT
TAGAGGAGGAGAATACGGATCAAGGTCCGCCTTCCCATGTATAGTCTACT
TTCCATGATACCCAACAGAGCATTCACAAAAAGATCCATGAGTAAGCAGC
AGGAATAAGAGCGCGTATCGGCCAAGGCCCGTGTATATTTGCATTTGCGT
GTCATGAGATGTCAGGAGAACAAAGTCCAACGCTACAAAAAATTAATTTT
ACGTGT
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protein sequence of rna3702

>rna3702-protein ID=rna3702-protein|Name=rna3702|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MEQGRREGSVKREPKWQHNVPLTYIDRVAFSWFVLDAITHLSIELGYVLL
ALGPTARASPSFMGFLWREYARADSRWAGRDPNIIAIELVTVFLLGPACL
LAAWAIYHRRPYRHVLQLGISLLELYGGWMTFAPDVLAGAPSLALQDPFL
LSVHLIFMNGLWVLVPAVLAWESGATLVGACSLAKVGASGGKEGGSKREE
RGQAPGIPSVHWFWVLAMAMVVYVILVPLILVATAAPPPVEASGRVVEL
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mRNA from alignment at CM002461.1:1012089..1013580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3702 ID=rna3702|Name=rna3702|organism=Nannochloropsis gaditana|type=mRNA|length=1492bp|location=Sequence derived from alignment at CM002461.1:1012089..1013580- (Nannochloropsis gaditana)
CCAAACCAGACGTGGTGCCCCAAATCTCCCGCGTGCACCATATGAACTTC
GTACATGGAGCGACCGGATTCGTGAGACGGCCCGGCCACACGTCATGTAG
ATAGGAGAATGGACCACGGAACGGCACGGATGGCCACGTGTATTTATCCG
CGGAGATTTAACCTTGTTCTTCCTTTCTCATTGGCCTTCCGCTCGCTGAG
GACACAGCGAGCGGAGGGGATGCCGAGCAATTCAATTCCCCGTGGTGCTG
GCTATGTGAAGACAACTTAGAGAATCATGTGGGCAGCGTCACTCTTACGA
TTGTGTGGAGGCAAGGCGGTGTCAGAGAACCCGGACGGTGCGCCAAACAG
TGGCATTAAACGTATATCATGTCTGCCGCCAGCCTAACACCTCGAAAGCC
TGATGCTTTCTTCGCGCCTTATTCCTACAAGTGGTATTCATGTCTTAGAG
CAAGATAAAAGCGATTGGCTTCTCGATCATCACAACAAAATGCGCTTTGA
AGACACTGTCTAGGTATGGAGCAGGGTCGGCGCGAGGGCAGCGTCAAGAG
GGAACCAAAGTGGCAGCATAATGTGCCCTTAACGTACATAGATCGGGTAC
GGATCGTAATCAACAGGAACAAAATTACCTGCGACTTCTCCAATCATCGC
TCTCGTCAATTTTTTGTGTGTTTTTTCCCAAAGGCATACGGTTGTTGACA
CCCCCTCTCCCCCCGCTCTACCTTTCCTCTTCTTTCCCGTCTTTTGTTTG
ACCGATTTCCTCAGGTCGCCTTCTCATGGTTTGTGCTCGACGCCATCACG
CATCTCTCCATCGAACTTGGCTACGTGCTCCTCGCATTGGGTCCCACTGC
GCGTGCCTCGCCCTCCTTCATGGGGTTCCTCTGGCGTGAGTACGCGCGAG
CAGACAGTCGGTGGGCCGGGCGAGATCCCAATATCATCGCCATCGAATTG
GTCACTGTTTTCCTCCTGGGCCCCGCCTGCCTGCTTGCCGCATGGGCCAT
CTATCATCGACGTCCTTACCGCCACGTCCTTCAACTTGGCATCTCTCTTC
TTGAGCTGTACGGCGGGTGGATGACTTTTGCACCCGATGTGCTGGCAGGT
GCGCCGTCTCTGGCTCTTCAGGATCCCTTCCTCCTCTCGGTGCATTTGAT
CTTTATGAATGGCCTGTGGGTCCTCGTCCCCGCCGTCCTTGCATGGGAAA
GCGGGGCCACACTCGTTGGGGCCTGCTCCCTGGCCAAAGTTGGAGCGAGC
GGAGGGAAAGAAGGAGGGAGCAAGAGGGAGGAGAGGGGGCAGGCCCCGGG
GATACCTTCGGTCCATTGGTTCTGGGTGCTGGCAATGGCGATGGTTGTCT
ACGTGATTTTAGTGCCGCTGATCCTGGTAGCTACAGCTGCTCCTCCTCCT
GTAGAAGCGAGTGGTCGAGTGGTTGAACTTTAAGCTTCGGCAAGAGCGAG
CGCGGGCGTGAGATTGCAAAGAACAAAGTACTCGATGAAACC
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Coding sequence (CDS) from alignment at CM002461.1:1012089..1013580-

>rna3702 ID=rna3702|Name=rna3702|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at CM002461.1:1012089..1013580- (Nannochloropsis gaditana)
GTCGCCTTCTCATGGTTTGTGCTCGACGCCATCACGCATCTCTCCATCGA
ACTTGGCTACGTGCTCCTCGCATTGGGTCCCACTGCGCGTGCCTCGCCCT
CCTTCATGGGGTTCCTCTGGCGTGAGTACGCGCGAGCAGACAGTCGGTGG
GCCGGGCGAGATCCCAATATCATCGCCATCGAATTGGTCACTGTTTTCCT
CCTGGGCCCCGCCTGCCTGCTTGCCGCATGGGCCATCTATCATCGACGTC
CTTACCGCCACGTCCTTCAACTTGGCATCTCTCTTCTTGAGCTGTACGGC
GGGTGGATGACTTTTGCACCCGATGTGCTGGCAGGTGCGCCGTCTCTGGC
TCTTCAGGATCCCTTCCTCCTCTCGGTGCATTTGATCTTTATGAATGGCC
TGTGGGTCCTCGTCCCCGCCGTCCTTGCATGGGAAAGCGGGGCCACACTC
GTTGGGGCCTGCTCCCTGGCCAAAGTTGGAGCGAGCGGAGGGAAAGAAGG
AGGGAGCAAGAGGGAGGAGAGGGGGCAGGCCCCGGGGATACCTTCGGTCC
ATTGGTTCTGGGTGCTGGCAATGGCGATGGTTGTCTACGTGATTTTAGTG
CCGCTGATCCTGGTAGCTACAGCTGCTCCTCCTCCTGTAGAAGCGAGTGG
TCGAGTGGTTGAACTTTAAATGGAGCAGGGTCGGCGCGAGGGCAGCGTCA
AGAGGGAACCAAAGTGGCAGCATAATGTGCCCTTAACGTACATAGATCGG
GTCGCCTTCTCATGGTTTGTGCTCGACGCCATCACGCATCTCTCCATCGA
ACTTGGCTACGTGCTCCTCGCATTGGGTCCCACTGCGCGTGCCTCGCCCT
CCTTCATGGGGTTCCTCTGGCGTGAGTACGCGCGAGCAGACAGTCGGTGG
GCCGGGCGAGATCCCAATATCATCGCCATCGAATTGGTCACTGTTTTCCT
CCTGGGCCCCGCCTGCCTGCTTGCCGCATGGGCCATCTATCATCGACGTC
CTTACCGCCACGTCCTTCAACTTGGCATCTCTCTTCTTGAGCTGTACGGC
GGGTGGATGACTTTTGCACCCGATGTGCTGGCAGGTGCGCCGTCTCTGGC
TCTTCAGGATCCCTTCCTCCTCTCGGTGCATTTGATCTTTATGAATGGCC
TGTGGGTCCTCGTCCCCGCCGTCCTTGCATGGGAAAGCGGGGCCACACTC
GTTGGGGCCTGCTCCCTGGCCAAAGTTGGAGCGAGCGGAGGGAAAGAAGG
AGGGAGCAAGAGGGAGGAGAGGGGGCAGGCCCCGGGGATACCTTCGGTCC
ATTGGTTCTGGGTGCTGGCAATGGCGATGGTTGTCTACGTGATTTTAGTG
CCGCTGATCCTGGTAGCTACAGCTGCTCCTCCTCCTGTAGAAGCGAGTGG
TCGAGTGGTTGAACTTTAAATGGAGCAGGGTCGGCGCGAGGGCAGCGTCA
AGAGGGAACCAAAGTGGCAGCATAATGTGCCCTTAACGTACATAGATCGG
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Synonyms
Publications