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Properties
| Property Name | Value |
|---|
| Product | 26s proteasome non-atpase regulatory subunit 11 |
| Orig transcript id | gnl|cribi|Naga_100127g9.6213.mrna |
| Orig protein id | gnl|cribi|Naga_100127g9.6213 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:1003016..1005159 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3698 ID=rna3698|Name=rna3698|organism=Nannochloropsis gaditana|type=mRNA|length=2818bp
AAAACAGGATCATGTCAGACTTAGACCAATATTCGAGAGAAATGCTGGAG
CAAGCCCTTCTGGATTCATTGCAAGATGGGAGCCCTGTCTCGCCGCCGCC
AGACCCCGCCCCCAAACAATCCGACTCAGACGAAGACGGTGTAGAATGGG
AGGAGCGACTATGGAGAGAATTACCGCAGGAATTATGGGATAAAGTCGTG
ATGCGAAATGGCGTGCCTGGCTTACACGACAGTAGGGCTATCTGCAAGAC
CTTGATTGAAGCTTTATATGACCCCCGCATTCACAAGCATGTAGACGTGA
CTAAGGACGGGCTGCGGCGATTCTTTGAGGCCTTGACCACCCACTCGGAC
CATGTGCTGCACTCCCACGAGCTGCAGGAAGCATTTCAACGCACCTTGAA
AGATTTTGGCGTGTGGGAAGGTGAGCGGCCGGAATTCCGACAATACTGGA
AGAAGACCTGGGCGGAAATGTTGCTTGTCCTGACCCGTGTCATGCACGGG
GACAAAAGCTCGGGGTCGGCGGGGGGCGAGGCCCGACGTCAGGGGGACAC
TTTCTGCTTCGGAGCTTTCGCGGGATTGCTCCGAAGGCTCAAATTAGAGT
TGGCTTTGCGGGTCTGGGAAAAGTCCATGGGACCCAGGGTCATGTCGTTG
GCCTCGCGTCGGTCCATCGTGGAGATTGATATCGACGAGGGGAAGCGTGG
TCGCGGTGGAAGCGGCGAACAGGAGGGCAACGGCCAGGAAATACCGGAAA
TACCGGGAATGGCGGATGTGAAATGGCCCCGACGGTTGAGCGCCTTGTAC
AATTTGGAAGAGGAAGAAGTGGTTTTGAAAACCTACGTCTGGAACGCCCG
CCGAGTCCGGGGACTGGACGTGACGCGTCGGAACATGCGAGATTTCTTCC
TGGGACACCGGGATCCAGAATGGCGGGTGCGGTGGGTGATTGCCGACTGG
TCAGACAGGGCCAACATCATCCGCCTGAGTATCAAGTACTGTTTCCACCC
ATTACATTTGGAAGACGTGCTCAAGCTGGAGCGGCAGCAACCTCGCTTTC
TCAAGTACGGAGGTCATTATTTTCTTATCTTGCCCTTGTTGCGCCTGGTC
CGGGATGCCGCGGAAGCCAAAGGCGAGCACAGCACCCGTGCCACCCCCAC
CAGCCTCCCTGACCACGGGGACACCCCCAAGAAAGAGGACAGGTGGAAAG
TAGCCGCGTCACAAGACTTCGCGGACATTGCCCTCGAAACCTCGCGTTTG
GCGATTTTTGCCGCCGGCCCCCCCCATTTTGACACCATCATCACCATCCA
CGGGGCTTGGCAACGCGTCCGCAACAGGTGCTGCTCTCTGGAACCCCCAA
CGCCCAACGAGTCGGTTCCCGGGAAACGGAACGTCTTTGAACGGATGACC
GCCCCGGTGCCCATCGAAACAGGAGCCTGCGCGGCCATCCCCATGGAGGC
GGCTCCCTCCCTTGCCTGGACCCACGAAACCTTCTCCACCCCCTCCATTC
CCCCTCTCCCGGGGGACCTCTCTTCTGCACCGCGGTCGGGAGACAAGCCT
CATGCTTTGAATCCAGAAGGTTCGACCCCCCCGCCCATGGGCCCTACCAG
CGTCTTGGGCGCTGCCTTCCGCCTCCTCCATGAGGACTACAGCTCCGTGA
GACATGGAAATTCGAATTGGATGTTGCACACGATACTCGAAACCATCACT
AAGATGATTATTCCCATTATGGCCTTGTATGAAACTCGCCTTCTCGCTTT
TCAGAGGGACCTGAACGGGCCGGACGCGCCGCGAATGCGTGAGCGTCTAA
GCAAACCCATTATGGACGTGAAGCACGATTTGATATCGCTGCAACAACGC
ATAAAAAGCATGCTTCCCGTGCTTCGGGGCCTGATCAGTGAACCGAGCTT
GCGGGAGGACGAAGCGCTTTTTTATATCCAGGGGGTCCACGACGATTTGC
ACGTGCTCTACGATGATATCAACACCATGTTGGTCCTGGCGCAAAGCTTG
CTGGACGAAAGCAAGTACTTGAAGGATGATACCCGGAACGAGGCCCTGAA
GCTCTTCGCCGTCGTCACGGCGTTGTTTTGTCCCTTACAATTCCTTGCGG
GCTACTTCGGGACTAATTTTGTCGGTAAGGCTCGCGCCTGGGCACGGGCA
GCGGGAAGGATCTGTCGGTCGTTTGGGAAGTCGTTAGAGAGGACCTAAAT
TACATCTTTGTGGCATAGGAACTTACATGGAGAGAGTTCGTAGGCAAGCA
TTCCGTGTTGGTCACTCGTTGCGACTCACGCGTCCTTAAATTCCCCCCCC
GGCATCTATCCACAGACGTGCACACAGGACGCTCGACAATACCGTTAATG
AACCACCCCGATGGACCGCTCTTCTTTTGGCTGATATGCCTCGTGCTAAC
TGCGTTCTTTTTGGCGTACATTCGTTACAGTCGGCGGTGGATATAAGGAC
GGGGAGGGGAGATGCACATGGGCCACGGCCTGGACCCCACCCGTCCCGCC
AGCGTGGGAGATCACCAAGACGCGTCCTCCCTCTGTCCTGCGCGTACACG
ACAGAAGTGGGGAGCACAAGAGGACGCGGGGAATCCTGGAAGCGCCGTAG
CCTTGGGTGGTTGGGATGGGATAAGTGCATGCATGCGCATGCGATATGCA
TTTGTACGAAGCAATAGAAAACTGGGATGGATCAATGTGCTTGGGTATAA
ATGAATGAAATGATGATAGAGGGCATATATGTTCCACTCTAATCTTGCCG
TGTGGCTAGGCAATCATGATGAAAAATCAAAGTACAATCTTAAAAATAGA
AATAAGAGTTGGGAGGGT back to topprotein sequence of rna3698 >rna3698-protein ID=rna3698-protein|Name=rna3698|organism=Nannochloropsis gaditana|type=polypeptide|length=478bp
MTAPASMEVSGGVEESKTATEPKPSAPTNVNAAMEEEESLPDPLKEALEA
AEELAQSHPSKAITAFHAIVNTPDREDDAAQRLKEEAIYRLAKLHADAHQ
FQEVMLLLKTSDVFFAQIPKAKTAKIVRTIIDIVTKIPDSVDLQVDLCRE
VVAWCIAQKRTFLRQRIESRLATLLYARADYSGALALISKLLRELKKFDD
KQLLVETHLVEARIDHALRNLPKAKAALTAARTAGNSIYVVPAMQAELDQ
MSGVLHCEEGDYKTAHSYFLEAFEAFDSLSDLRAPKCLEYMMLCLVLQGT
PQDVSAVTSKHGLKYAGDGMNALIAIAAAAKERSLEAFDAARKTYGGVLA
QDLLLTHHVHIVYEQLLESNLLKIIEPFSCVEIEHVATLINLPQKSVERK
LSQMILDDKLYGTLDQGKGQLLVYERSTLDKTFSHGLELVGNLGMVVDSL
FRRAQKMVHAGHAREGGGGGGEGAVSSA back to topmRNA from alignment at CM002461.1:1003016..1005159- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3698 ID=rna3698|Name=rna3698|organism=Nannochloropsis gaditana|type=mRNA|length=2144bp|location=Sequence derived from alignment at CM002461.1:1003016..1005159- (Nannochloropsis gaditana)
TAAATGAACAATACACCAGGTAGAGACGAGCATGACGGCGCCTGCGTCAA
TGGAAGTTTCGGGTGGCGTGGAGGAAAGCAAGACAGCGACAGAGCCCAAG
CCCTCTGCCCCCACGAACGTCAACGCGGCAATGGTAAGTCATTCCCCTGA
CAAAAGCGAAGTACTCGATATTTGTAAATGCAAGCCAGAATTTTTGTCAG
GCATTACTTTTTGGGTCCTGGTAGGTGCTGTCTAGGCGGAACATTTATGT
AGTGTCGCCTCTTTTTCCGGAGAAACCTGTGCCCACAGCCTGCTCTAACA
GTGTCGTCTGATACATCCGTTAAGATGCCCCTCCACTGATTATTTTTTAC
CCTTTTTCTTTCCGTTGATTTTTTGTCTCCCCTTTTCTCATGCGCAGGAG
GAAGAAGAAAGCCTCCCCGACCCTTTGAAAGAGGCCTTGGAAGCCGCCGA
GGAGCTCGCGCAGTCGCACCCGTCAAAAGCCATCACTGCCTTCCACGCGA
TCGTTAACACGCCGGATCGAGAGGACGACGCCGCGCAACGCCTCAAGGAA
GAAGCCATCTACCGCTTGGCGAAATTACACGCGGATGCTCACCAATTTCA
AGAGGTGATGCTGCTCTTAAAGACCAGTGATGTTTTCTTCGCCCAGATTC
CCAAAGCCAAGACTGCCAAAATAGTGCGGACGATCATTGATATCGTCACC
AAAATCCCGGATTCTGTCGATCTCCAGGTGGATCTCTGCAGAGAGGTGAG
AAAAGAGGAACGGGGCCGCTGATCCGGGCAGGGACACTACGTAGTGGCTA
GGGTTGACACCCGGCGGGTTGATCTTGTTGCATTCACTCCCGCCCTCCAC
GATCAATGCTCCTTGCCTCCACCGCTAATTGTCTCATTATCTTATTCAGG
TTGTGGCCTGGTGCATTGCCCAGAAACGAACCTTCCTCCGGCAACGGATT
GAATCCCGCCTCGCCACCTTGTTGTACGCACGCGCGGACTATTCAGGCGC
TCTGGCCTTGATCAGCAAGCTGTTGCGGGAACTCAAGAAATTCGACGACA
AGCAGCTCTTGGTGGAGACCCATTTGGTAGAAGCCAGGATCGATCACGCC
CTTCGGAACCTGCCCAAGGCCAAGGCTGCGCTTACGGCCGCCCGCACCGC
CGGGAACAGCATCTATGTTGTGCCTGCTATGCAAGCGGAGCTGGATCAGA
TGTCTGGGGTGCTGCACTGCGAGGAAGGGGACTACAAAACCGCCCATTCG
TACTTTTTGGAAGCCTTCGAGGCCTTCGATTCTTTGTCAGACTTGCGGGC
GCCGAAATGCTTGGAATACATGATGCTTTGCCTGGTGCTGCAGGGTACCC
CTCAGGACGTGTCGGCAGTGACGAGCAAGCACGGTTTGAAATATGCAGGG
GACGGGATGAATGCCCTGATTGCCATTGCCGCCGCGGCCAAGGAAAGGAG
TTTGGAGGCCTTCGATGCGGCCCGGAAGACCTACGGGGGCGTGCTCGCCC
AGGATTTGCTGCTCACACACCACGTCCATATCGTCTACGAGCAGCTGCTG
GAATCAAATTTGTTGAAAATCATCGAACCTTTCTCGTGCGTGGAGATCGA
GCACGTGGCCACTTTGATCAACCTTCCTCAGAAGAGCGTGGAGAGGAAAC
TCTCGCAGATGATCCTGGACGATAAGCTTTATGGCACCCTGGACCAAGGA
AAAGGACAATTGCTCGTCTACGAACGATCCACGTTGGACAAAACCTTCTC
CCACGGCTTGGAACTGGTGGGCAATCTGGGCATGGTGGTGGACAGTCTCT
TTCGACGGGCACAAAAAATGGTGCATGCCGGGCATGCGAGAGAGGGCGGG
GGCGGGGGGGGGGAGGGGGCTGTATCCTCTGCCTAACAACTCTTTCCGGT
GAGAAAGCAACGGGCGATGGGGGTGGCGGACGATTCCCCAAAAAAGAAGA
GCTCGCTCTCGACGAACAACACGAGGGGATTATGTACCGTGCTCCGGTAG
ACACCTCGTTTGACGCTGGCCAGAGTAACGCGAACCTGCAACCCTCCCAA
CTCTTATTTCTATTTTTAAGATTGTACTTTGATTTTTCATCATGATTGCC
TAGCCACACGGCAAGATTAGAGTGGAACATATATGCCCTCTATC back to topCoding sequence (CDS) from alignment at CM002461.1:1003016..1005159- >rna3698 ID=rna3698|Name=rna3698|organism=Nannochloropsis gaditana|type=CDS|length=4311bp|location=Sequence derived from alignment at CM002461.1:1003016..1005159- (Nannochloropsis gaditana)
GTTGTGGCCTGGTGCATTGCCCAGAAACGAACCTTCCTCCGGCAACGGAT
TGAATCCCGCCTCGCCACCTTGTTGTACGCACGCGCGGACTATTCAGGCG
CTCTGGCCTTGATCAGCAAGCTGTTGCGGGAACTCAAGAAATTCGACGAC
AAGCAGCTCTTGGTGGAGACCCATTTGGTAGAAGCCAGGATCGATCACGC
CCTTCGGAACCTGCCCAAGGCCAAGGCTGCGCTTACGGCCGCCCGCACCG
CCGGGAACAGCATCTATGTTGTGCCTGCTATGCAAGCGGAGCTGGATCAG
ATGTCTGGGGTGCTGCACTGCGAGGAAGGGGACTACAAAACCGCCCATTC
GTACTTTTTGGAAGCCTTCGAGGCCTTCGATTCTTTGTCAGACTTGCGGG
CGCCGAAATGCTTGGAATACATGATGCTTTGCCTGGTGCTGCAGGGTACC
CCTCAGGACGTGTCGGCAGTGACGAGCAAGCACGGTTTGAAATATGCAGG
GGACGGGATGAATGCCCTGATTGCCATTGCCGCCGCGGCCAAGGAAAGGA
GTTTGGAGGCCTTCGATGCGGCCCGGAAGACCTACGGGGGCGTGCTCGCC
CAGGATTTGCTGCTCACACACCACGTCCATATCGTCTACGAGCAGCTGCT
GGAATCAAATTTGTTGAAAATCATCGAACCTTTCTCGTGCGTGGAGATCG
AGCACGTGGCCACTTTGATCAACCTTCCTCAGAAGAGCGTGGAGAGGAAA
CTCTCGCAGATGATCCTGGACGATAAGCTTTATGGCACCCTGGACCAAGG
AAAAGGACAATTGCTCGTCTACGAACGATCCACGTTGGACAAAACCTTCT
CCCACGGCTTGGAACTGGTGGGCAATCTGGGCATGGTGGTGGACAGTCTC
TTTCGACGGGCACAAAAAATGGTGCATGCCGGGCATGCGAGAGAGGGCGG
GGGCGGGGGGGGGGAGGGGGCTGTATCCTCTGCCTAAGAGGAAGAAGAAA
GCCTCCCCGACCCTTTGAAAGAGGCCTTGGAAGCCGCCGAGGAGCTCGCG
CAGTCGCACCCGTCAAAAGCCATCACTGCCTTCCACGCGATCGTTAACAC
GCCGGATCGAGAGGACGACGCCGCGCAACGCCTCAAGGAAGAAGCCATCT
ACCGCTTGGCGAAATTACACGCGGATGCTCACCAATTTCAAGAGGTGATG
CTGCTCTTAAAGACCAGTGATGTTTTCTTCGCCCAGATTCCCAAAGCCAA
GACTGCCAAAATAGTGCGGACGATCATTGATATCGTCACCAAAATCCCGG
ATTCTGTCGATCTCCAGGTGGATCTCTGCAGAGAGATGACGGCGCCTGCG
TCAATGGAAGTTTCGGGTGGCGTGGAGGAAAGCAAGACAGCGACAGAGCC
CAAGCCCTCTGCCCCCACGAACGTCAACGCGGCAATGGTTGTGGCCTGGT
GCATTGCCCAGAAACGAACCTTCCTCCGGCAACGGATTGAATCCCGCCTC
GCCACCTTGTTGTACGCACGCGCGGACTATTCAGGCGCTCTGGCCTTGAT
CAGCAAGCTGTTGCGGGAACTCAAGAAATTCGACGACAAGCAGCTCTTGG
TGGAGACCCATTTGGTAGAAGCCAGGATCGATCACGCCCTTCGGAACCTG
CCCAAGGCCAAGGCTGCGCTTACGGCCGCCCGCACCGCCGGGAACAGCAT
CTATGTTGTGCCTGCTATGCAAGCGGAGCTGGATCAGATGTCTGGGGTGC
TGCACTGCGAGGAAGGGGACTACAAAACCGCCCATTCGTACTTTTTGGAA
GCCTTCGAGGCCTTCGATTCTTTGTCAGACTTGCGGGCGCCGAAATGCTT
GGAATACATGATGCTTTGCCTGGTGCTGCAGGGTACCCCTCAGGACGTGT
CGGCAGTGACGAGCAAGCACGGTTTGAAATATGCAGGGGACGGGATGAAT
GCCCTGATTGCCATTGCCGCCGCGGCCAAGGAAAGGAGTTTGGAGGCCTT
CGATGCGGCCCGGAAGACCTACGGGGGCGTGCTCGCCCAGGATTTGCTGC
TCACACACCACGTCCATATCGTCTACGAGCAGCTGCTGGAATCAAATTTG
TTGAAAATCATCGAACCTTTCTCGTGCGTGGAGATCGAGCACGTGGCCAC
TTTGATCAACCTTCCTCAGAAGAGCGTGGAGAGGAAACTCTCGCAGATGA
TCCTGGACGATAAGCTTTATGGCACCCTGGACCAAGGAAAAGGACAATTG
CTCGTCTACGAACGATCCACGTTGGACAAAACCTTCTCCCACGGCTTGGA
ACTGGTGGGCAATCTGGGCATGGTGGTGGACAGTCTCTTTCGACGGGCAC
AAAAAATGGTGCATGCCGGGCATGCGAGAGAGGGCGGGGGCGGGGGGGGG
GAGGGGGCTGTATCCTCTGCCTAAGAGGAAGAAGAAAGCCTCCCCGACCC
TTTGAAAGAGGCCTTGGAAGCCGCCGAGGAGCTCGCGCAGTCGCACCCGT
CAAAAGCCATCACTGCCTTCCACGCGATCGTTAACACGCCGGATCGAGAG
GACGACGCCGCGCAACGCCTCAAGGAAGAAGCCATCTACCGCTTGGCGAA
ATTACACGCGGATGCTCACCAATTTCAAGAGGTGATGCTGCTCTTAAAGA
CCAGTGATGTTTTCTTCGCCCAGATTCCCAAAGCCAAGACTGCCAAAATA
GTGCGGACGATCATTGATATCGTCACCAAAATCCCGGATTCTGTCGATCT
CCAGGTGGATCTCTGCAGAGAGATGACGGCGCCTGCGTCAATGGAAGTTT
CGGGTGGCGTGGAGGAAAGCAAGACAGCGACAGAGCCCAAGCCCTCTGCC
CCCACGAACGTCAACGCGGCAATGGTTGTGGCCTGGTGCATTGCCCAGAA
ACGAACCTTCCTCCGGCAACGGATTGAATCCCGCCTCGCCACCTTGTTGT
ACGCACGCGCGGACTATTCAGGCGCTCTGGCCTTGATCAGCAAGCTGTTG
CGGGAACTCAAGAAATTCGACGACAAGCAGCTCTTGGTGGAGACCCATTT
GGTAGAAGCCAGGATCGATCACGCCCTTCGGAACCTGCCCAAGGCCAAGG
CTGCGCTTACGGCCGCCCGCACCGCCGGGAACAGCATCTATGTTGTGCCT
GCTATGCAAGCGGAGCTGGATCAGATGTCTGGGGTGCTGCACTGCGAGGA
AGGGGACTACAAAACCGCCCATTCGTACTTTTTGGAAGCCTTCGAGGCCT
TCGATTCTTTGTCAGACTTGCGGGCGCCGAAATGCTTGGAATACATGATG
CTTTGCCTGGTGCTGCAGGGTACCCCTCAGGACGTGTCGGCAGTGACGAG
CAAGCACGGTTTGAAATATGCAGGGGACGGGATGAATGCCCTGATTGCCA
TTGCCGCCGCGGCCAAGGAAAGGAGTTTGGAGGCCTTCGATGCGGCCCGG
AAGACCTACGGGGGCGTGCTCGCCCAGGATTTGCTGCTCACACACCACGT
CCATATCGTCTACGAGCAGCTGCTGGAATCAAATTTGTTGAAAATCATCG
AACCTTTCTCGTGCGTGGAGATCGAGCACGTGGCCACTTTGATCAACCTT
CCTCAGAAGAGCGTGGAGAGGAAACTCTCGCAGATGATCCTGGACGATAA
GCTTTATGGCACCCTGGACCAAGGAAAAGGACAATTGCTCGTCTACGAAC
GATCCACGTTGGACAAAACCTTCTCCCACGGCTTGGAACTGGTGGGCAAT
CTGGGCATGGTGGTGGACAGTCTCTTTCGACGGGCACAAAAAATGGTGCA
TGCCGGGCATGCGAGAGAGGGCGGGGGCGGGGGGGGGGAGGGGGCTGTAT
CCTCTGCCTAAGAGGAAGAAGAAAGCCTCCCCGACCCTTTGAAAGAGGCC
TTGGAAGCCGCCGAGGAGCTCGCGCAGTCGCACCCGTCAAAAGCCATCAC
TGCCTTCCACGCGATCGTTAACACGCCGGATCGAGAGGACGACGCCGCGC
AACGCCTCAAGGAAGAAGCCATCTACCGCTTGGCGAAATTACACGCGGAT
GCTCACCAATTTCAAGAGGTGATGCTGCTCTTAAAGACCAGTGATGTTTT
CTTCGCCCAGATTCCCAAAGCCAAGACTGCCAAAATAGTGCGGACGATCA
TTGATATCGTCACCAAAATCCCGGATTCTGTCGATCTCCAGGTGGATCTC
TGCAGAGAGATGACGGCGCCTGCGTCAATGGAAGTTTCGGGTGGCGTGGA
GGAAAGCAAGACAGCGACAGAGCCCAAGCCCTCTGCCCCCACGAACGTCA
ACGCGGCAATG back to top
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