rna3690, rna3690 (mRNA) Nannochloropsis gaditana

Overview
Namerna3690
Unique Namerna3690
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length591
Alignment locationCM002461.1:987019..988055 +

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Properties
Property NameValue
Productdead deah box rna
Orig transcript idgnl|cribi|Naga_102011g1.8460.mrna
Orig protein idgnl|cribi|Naga_102011g1.8460
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:987019..988055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102011g1gene3554Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3690rna3690-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26992.1cds3681Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3690 ID=rna3690|Name=rna3690|organism=Nannochloropsis gaditana|type=mRNA|length=591bp
TATTCCAGGCAATGCATCATATCCTGCCTCACGCATAAGAAATTTTCCAT
CGAAACCACCCAGCCCATTGTTGGAGCTGCACGTCTCGTCTTTTACTTCT
TGCTTCATTCCTAACCGCTTCCTGCTCGCCTTTTCTACTCGCGCGGACAC
GGCCAGCGACTTGCTGTCTCCAAGCCCCAACACCTGCTCACTTTGGCGTA
CGCCCATCCCTGCGAAATACATACAAACGGACACAGACACGTTATAGGGG
TGTGAACACGAATAATGCCGCCCATATTGCTGGAGGACGCGGCAATCGAC
GCATTATTCACGGAGGTGGAGGCTTGTGCTAGGGAGGATGATGGGGAGGT
ACACCCGCTACCCGTCCGATTACTGCAAGACAGTGTTTCAGGCGAAATGG
TGGCATTGCCGCCCGCCATCGCTCAAGCCGGGGATGAAAGTTATTTTTTC
GAGCGCATTGCAGCAACTACCACACCTTTTGGGTTGCCGGTGCCGGGAGC
TCGGGAGCTGTTGATGGAGAGGTATTTGGAAATCGAGGCCTTACTCGACG
ACATGGTACGTGATGGGCGGTCGACCTGAGTTGTAATCGCG
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protein sequence of rna3690

>rna3690-protein ID=rna3690-protein|Name=rna3690|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATH
MTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTT
EILRSMLYRGADIIRDIEWVGGRGEGREGGREGGRSTIANQVVLLMPWRH
LGKEEG
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mRNA from alignment at CM002461.1:987019..988055+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3690 ID=rna3690|Name=rna3690|organism=Nannochloropsis gaditana|type=mRNA|length=1037bp|location=Sequence derived from alignment at CM002461.1:987019..988055+ (Nannochloropsis gaditana)
GTCCAGGCCCCCTGGAAAATACgccacccccgccccgtcctccctcccgc
cctccccccctccctcctgggtGGTCACTGCCCGCCTCGACGTCTCCGAC
TTCTCTGCCTTGGTCCCCCGCATGGCCATGACctacccttttcccctcga
tGACTTCCAGAAGCAGGCCGTGGCCCGCCTGGAACGGGGAGAGAACGTTT
TCGTTGCTGCTCATACGTCCGCGGGAAAGACGGTGGTGGCAGAGTACGCG
ATCGGTCCgtcctaccctccctccctccctccctcccttccttcctccct
ccctccttcgatgCCACTTTCCCCATTATCATCCCATTTCGCTTTGTACC
ACCTGTCCTGTTTTTACAACACTACACGTGGAATTCAACCGCAGTAGTGG
TCCatcctacttcctcctccctcccttccccccttcgtGCGTCCTTTCGG
GCCTGACGAGACATCCGATCCTGGGaaaccccctcctccctccctccctc
cctcccttcctccctccccgcctgcagCTCTCAGTGCCACGCACATGACG
CGGACGGTCTACACCTCCCCTATCAAGGCGCTTTCGAACCAGAAGTACCG
TGACTTcaaggttgggagggagggagggagggagggagggagggagagag
aggagtaaggaaaggaaggttTCGTCGTGCGCAAGGCTCTCGCTGAAACA
CTTTTCTCCGTGGTACCATCCTCGGTGCGCTCCAGTCGTTTaagtcctcc
cttcctttccgccctccgccctccctccccatcaggAGAAGTTTGGCGAG
CGCGACGTGGGGTTGATCACGGGGGACGTGTCTGTGAACCCAGAGGCTTC
CTGTCTCATCATGACGACCGAAATCCTCCGTTCCATGCTCTATCGGGGTG
CGGACATCATTCGCGACATTGAatgggtaggagggaggggggaagggagg
gagggagggagggagggaggacggagtACGATTGCCAACCAAGTCGTACT
TCTCATGCCGTGGCGACATcttgggaaggaggaagga
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Coding sequence (CDS) from alignment at CM002461.1:987019..988055+

>rna3690 ID=rna3690|Name=rna3690|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002461.1:987019..988055+ (Nannochloropsis gaditana)
ATGGCCATGACctacccttttcccctcgatGACTTCCAGAAGCAGGCCGT
GGCCCGCCTGGAACGGGGAGAGAACGTTTTCGTTGCTGCTCATACGTCCG
CGGGAAAGACGGTGGTGGCAGAGTACGCGATCGCTCTCAGTGCCACGCAC
ATGACGCGGACGGTCTACACCTCCCCTATCAAGGCGCTTTCGAACCAGAA
GTACCGTGACTTcaaggAGAAGTTTGGCGAGCGCGACGTGGGGTTGATCA
CGGGGGACGTGTCTGTGAACCCAGAGGCTTCCTGTCTCATCATGACGACC
GAAATCCTCCGTTCCATGCTCTATCGGGGTGCGGACATCATTCGCGACAT
TGAatgggtaggagggaggggggaagggagggagggagggagggagggag
gacggagtACGATTGCCAACCAAGTCGTACTTCTCATGCCGTGGCGACAT
cttgggaaggaggaaggaATGGCCATGACctacccttttcccctcgatGA
CTTCCAGAAGCAGGCCGTGGCCCGCCTGGAACGGGGAGAGAACGTTTTCG
TTGCTGCTCATACGTCCGCGGGAAAGACGGTGGTGGCAGAGTACGCGATC
GCTCTCAGTGCCACGCACATGACGCGGACGGTCTACACCTCCCCTATCAA
GGCGCTTTCGAACCAGAAGTACCGTGACTTcaaggAGAAGTTTGGCGAGC
GCGACGTGGGGTTGATCACGGGGGACGTGTCTGTGAACCCAGAGGCTTCC
TGTCTCATCATGACGACCGAAATCCTCCGTTCCATGCTCTATCGGGGTGC
GGACATCATTCGCGACATTGAatgggtaggagggaggggggaagggaggg
agggagggagggagggaggacggagtACGATTGCCAACCAAGTCGTACTT
CTCATGCCGTGGCGACATcttgggaaggaggaaggaATGGCCATGACcta
cccttttcccctcgatGACTTCCAGAAGCAGGCCGTGGCCCGCCTGGAAC
GGGGAGAGAACGTTTTCGTTGCTGCTCATACGTCCGCGGGAAAGACGGTG
GTGGCAGAGTACGCGATCGCTCTCAGTGCCACGCACATGACGCGGACGGT
CTACACCTCCCCTATCAAGGCGCTTTCGAACCAGAAGTACCGTGACTTca
aggAGAAGTTTGGCGAGCGCGACGTGGGGTTGATCACGGGGGACGTGTCT
GTGAACCCAGAGGCTTCCTGTCTCATCATGACGACCGAAATCCTCCGTTC
CATGCTCTATCGGGGTGCGGACATCATTCGCGACATTGAatgggtaggag
ggaggggggaagggagggagggagggagggagggaggacggagtACGATT
GCCAACCAAGTCGTACTTCTCATGCCGTGGCGACATcttgggaaggagga
agga
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Synonyms
Publications