EWM26992.1, cds3681 (CDS) Nannochloropsis gaditana

Overview
NameEWM26992.1
Unique Namecds3681
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:987140..987272 +
Alignment locationCM002461.1:987546..987628 +
Alignment locationCM002461.1:987804..988055 +

Link to JBrowse

Properties
Property NameValue
End range.
End range988055
Protein idEWM26992.1
Productdead deah box rna
Partialtrue
Orig transcript idgnl|cribi|Naga_102011g1.8460.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:987140..987272 +
CM002461.1supercontigCM002461.1:987546..987628 +
CM002461.1supercontigCM002461.1:987804..988055 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|585109160|gb|EWM26992.1| (dead deah box rna, partial [Nannochloropsis gaditana])

HSP 1 Score: 323.939 bits (829), Expect = 2.576e-112
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWVGGRGEGREGGREGGRSTIANQVVLLMPWRHLGKEEG 156
            MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWVGGRGEGREGGREGGRSTIANQVVLLMPWRHLGKEEG
Sbjct:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWVGGRGEGREGGREGGRSTIANQVVLLMPWRHLGKEEG 156          
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|673053819|ref|XP_008880870.1| (hypothetical protein, variant 2 [Aphanomyces invadans] >gi|574463410|gb|ETV90482.1| hypothetical protein, variant 2 [Aphanomyces invadans])

HSP 1 Score: 212.616 bits (540), Expect = 5.638e-61
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
            MA+T+PF LD FQKQA+  LE  E VF+AAHTSAGKTVVAEYAIA+S  HMTRT+YTSPIKALSNQKYRDF+ KFG+ +VGLITGDVS+NPEASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct:  389 MAITFPFELDSFQKQAIVHLENHECVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGQDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADVIRDIEWV 508          
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|673053815|ref|XP_008880868.1| (hypothetical protein H310_14725 [Aphanomyces invadans] >gi|574463408|gb|ETV90480.1| hypothetical protein H310_14725 [Aphanomyces invadans])

HSP 1 Score: 213.001 bits (541), Expect = 6.036e-61
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
            MA+T+PF LD FQKQA+  LE  E VF+AAHTSAGKTVVAEYAIA+S  HMTRT+YTSPIKALSNQKYRDF+ KFG+ +VGLITGDVS+NPEASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct:  389 MAITFPFELDSFQKQAIVHLENHECVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGQDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADVIRDIEWV 508          
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|673053817|ref|XP_008880869.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574463409|gb|ETV90481.1| hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 212.231 bits (539), Expect = 7.572e-61
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
            MA+T+PF LD FQKQA+  LE  E VF+AAHTSAGKTVVAEYAIA+S  HMTRT+YTSPIKALSNQKYRDF+ KFG+ +VGLITGDVS+NPEASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct:  389 MAITFPFELDSFQKQAIVHLENHECVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGQDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADVIRDIEWV 508          
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|336087774|emb|CBN80532.1| (putative RNA helicase, partial [Millerozyma farinosa] >gi|336087778|emb|CBN80534.1| putative RNA helicase, partial [Millerozyma farinosa])

HSP 1 Score: 192.971 bits (489), Expect = 2.312e-60
Identity = 87/120 (72.50%), Postives = 107/120 (89.17%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
            MA  +PF LD FQ++A+  LE+G++VFVAAHTSAGKTV+AEYAIA++  +MT+ +YTSPIKALSNQK+RDFKE F + DVGLITGDV +NPEA+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct:   31 MAREFPFELDTFQQEAIYHLEQGDSVFVAAHTSAGKTVIAEYAIAMAKRNMTKAIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFV 150          
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|356871121|emb|CCC86689.1| (putative RNA helicase, partial [Millerozyma farinosa] >gi|356871123|emb|CCC86690.1| putative RNA helicase, partial [Millerozyma farinosa] >gi|356871129|emb|CCC86693.1| putative RNA helicase, partial [Millerozyma farinosa] >gi|356871131|emb|CCC86694.1| putative RNA helicase, partial [Millerozyma farinosa])

HSP 1 Score: 192.586 bits (488), Expect = 2.342e-60
Identity = 87/120 (72.50%), Postives = 107/120 (89.17%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
            MA  +PF LD FQ++A+  LE+G++VFVAAHTSAGKTV+AEYAIA++  +MT+ +YTSPIKALSNQK+RDFKE F + DVGLITGDV +NPEA+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct:   28 MAREFPFELDTFQQEAIYHLEQGDSVFVAAHTSAGKTVIAEYAIAMAKRNMTKAIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFV 147          
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|356871117|emb|CCC86687.1| (putative RNA helicase, partial [Millerozyma farinosa] >gi|356871119|emb|CCC86688.1| putative RNA helicase, partial [Millerozyma farinosa] >gi|356871125|emb|CCC86691.1| putative RNA helicase, partial [Millerozyma farinosa] >gi|356871127|emb|CCC86692.1| putative RNA helicase, partial [Millerozyma farinosa])

HSP 1 Score: 192.586 bits (488), Expect = 2.500e-60
Identity = 87/120 (72.50%), Postives = 107/120 (89.17%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
            MA  +PF LD FQ++A+  LE+G++VFVAAHTSAGKTV+AEYAIA++  +MT+ +YTSPIKALSNQK+RDFKE F + DVGLITGDV +NPEA+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct:   28 MAREFPFELDTFQQEAIYHLEQGDSVFVAAHTSAGKTVIAEYAIAMAKRNMTKAIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFV 147          
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|336087776|emb|CBN80533.1| (putative RNA helicase, partial [Millerozyma farinosa])

HSP 1 Score: 192.586 bits (488), Expect = 2.697e-60
Identity = 87/120 (72.50%), Postives = 107/120 (89.17%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
            MA  +PF LD FQ++A+  LE+G++VFVAAHTSAGKTV+AEYAIA++  +MT+ +YTSPIKALSNQK+RDFKE F + DVGLITGDV +NPEA+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct:   28 MAREFPFELDTFQQEAIYHLEQGDSVFVAAHTSAGKTVIAEYAIAMAKRNMTKAIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFV 147          
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|669164214|ref|XP_008617669.1| (hypothetical protein SDRG_13364 [Saprolegnia diclina VS20] >gi|530730610|gb|EQC28852.1| hypothetical protein SDRG_13364 [Saprolegnia diclina VS20])

HSP 1 Score: 210.69 bits (535), Expect = 3.461e-60
Identity = 96/120 (80.00%), Postives = 108/120 (90.00%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
            MAM++PF LD FQKQAV  LE  + VF+AAHTSAGKTVVAEYAIA+S  HMTRT+YTSPIKALSNQKYRDF+ KFG  +VGLITGDVS+NP+ASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct:  399 MAMSFPFELDSFQKQAVVHLENHDCVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGVDNVGLITGDVSINPQASCLVMTTEILRSMLYRGADVIRDIEWV 518          
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|813156831|ref|XP_012201764.1| (hypothetical protein SPRG_06913 [Saprolegnia parasitica CBS 223.65] >gi|641533661|gb|KDO27642.1| hypothetical protein SPRG_06913 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 210.69 bits (535), Expect = 3.667e-60
Identity = 96/120 (80.00%), Postives = 108/120 (90.00%), Query Frame = 0
Query:    1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
            MAM++PF LD FQKQAV  LE  + VF+AAHTSAGKTVVAEYAIA+S  HMTRT+YTSPIKALSNQKYRDF+ KFG  +VGLITGDVS+NP+ASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct:  375 MAMSFPFELDSFQKQAVVHLENHDCVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGVDNVGLITGDVSINPQASCLVMTTEILRSMLYRGADVIRDIEWV 494          
The following BLAST results are available for this feature:
BLAST of EWM26992.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109160|gb|EWM26992.1|2.576e-112100.00dead deah box rna, partial [Nannochloropsis gadita... [more]
gi|673053819|ref|XP_008880870.1|5.638e-6180.83hypothetical protein, variant 2 [Aphanomyces invad... [more]
gi|673053815|ref|XP_008880868.1|6.036e-6180.83hypothetical protein H310_14725 [Aphanomyces invad... [more]
gi|673053817|ref|XP_008880869.1|7.572e-6180.83hypothetical protein, variant 1 [Aphanomyces invad... [more]
gi|336087774|emb|CBN80532.1|2.312e-6072.50putative RNA helicase, partial [Millerozyma farino... [more]
gi|356871121|emb|CCC86689.1|2.342e-6072.50putative RNA helicase, partial [Millerozyma farino... [more]
gi|356871117|emb|CCC86687.1|2.500e-6072.50putative RNA helicase, partial [Millerozyma farino... [more]
gi|336087776|emb|CBN80533.1|2.697e-6072.50putative RNA helicase, partial [Millerozyma farino... [more]
gi|669164214|ref|XP_008617669.1|3.461e-6080.00hypothetical protein SDRG_13364 [Saprolegnia dicli... [more]
gi|813156831|ref|XP_012201764.1|3.667e-6080.00hypothetical protein SPRG_06913 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3690rna3690Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications