EWM26992.1, cds3681 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|585109160|gb|EWM26992.1| (dead deah box rna, partial [Nannochloropsis gaditana]) HSP 1 Score: 323.939 bits (829), Expect = 2.576e-112 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWVGGRGEGREGGREGGRSTIANQVVLLMPWRHLGKEEG 156
MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWVGGRGEGREGGREGGRSTIANQVVLLMPWRHLGKEEG
Sbjct: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWVGGRGEGREGGREGGRSTIANQVVLLMPWRHLGKEEG 156
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|673053819|ref|XP_008880870.1| (hypothetical protein, variant 2 [Aphanomyces invadans] >gi|574463410|gb|ETV90482.1| hypothetical protein, variant 2 [Aphanomyces invadans]) HSP 1 Score: 212.616 bits (540), Expect = 5.638e-61 Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
MA+T+PF LD FQKQA+ LE E VF+AAHTSAGKTVVAEYAIA+S HMTRT+YTSPIKALSNQKYRDF+ KFG+ +VGLITGDVS+NPEASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct: 389 MAITFPFELDSFQKQAIVHLENHECVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGQDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADVIRDIEWV 508
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|673053815|ref|XP_008880868.1| (hypothetical protein H310_14725 [Aphanomyces invadans] >gi|574463408|gb|ETV90480.1| hypothetical protein H310_14725 [Aphanomyces invadans]) HSP 1 Score: 213.001 bits (541), Expect = 6.036e-61 Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
MA+T+PF LD FQKQA+ LE E VF+AAHTSAGKTVVAEYAIA+S HMTRT+YTSPIKALSNQKYRDF+ KFG+ +VGLITGDVS+NPEASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct: 389 MAITFPFELDSFQKQAIVHLENHECVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGQDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADVIRDIEWV 508
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|673053817|ref|XP_008880869.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574463409|gb|ETV90481.1| hypothetical protein, variant 1 [Aphanomyces invadans]) HSP 1 Score: 212.231 bits (539), Expect = 7.572e-61 Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
MA+T+PF LD FQKQA+ LE E VF+AAHTSAGKTVVAEYAIA+S HMTRT+YTSPIKALSNQKYRDF+ KFG+ +VGLITGDVS+NPEASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct: 389 MAITFPFELDSFQKQAIVHLENHECVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGQDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADVIRDIEWV 508
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|336087774|emb|CBN80532.1| (putative RNA helicase, partial [Millerozyma farinosa] >gi|336087778|emb|CBN80534.1| putative RNA helicase, partial [Millerozyma farinosa]) HSP 1 Score: 192.971 bits (489), Expect = 2.312e-60 Identity = 87/120 (72.50%), Postives = 107/120 (89.17%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
MA +PF LD FQ++A+ LE+G++VFVAAHTSAGKTV+AEYAIA++ +MT+ +YTSPIKALSNQK+RDFKE F + DVGLITGDV +NPEA+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct: 31 MAREFPFELDTFQQEAIYHLEQGDSVFVAAHTSAGKTVIAEYAIAMAKRNMTKAIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFV 150
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|356871121|emb|CCC86689.1| (putative RNA helicase, partial [Millerozyma farinosa] >gi|356871123|emb|CCC86690.1| putative RNA helicase, partial [Millerozyma farinosa] >gi|356871129|emb|CCC86693.1| putative RNA helicase, partial [Millerozyma farinosa] >gi|356871131|emb|CCC86694.1| putative RNA helicase, partial [Millerozyma farinosa]) HSP 1 Score: 192.586 bits (488), Expect = 2.342e-60 Identity = 87/120 (72.50%), Postives = 107/120 (89.17%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
MA +PF LD FQ++A+ LE+G++VFVAAHTSAGKTV+AEYAIA++ +MT+ +YTSPIKALSNQK+RDFKE F + DVGLITGDV +NPEA+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct: 28 MAREFPFELDTFQQEAIYHLEQGDSVFVAAHTSAGKTVIAEYAIAMAKRNMTKAIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFV 147
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|356871117|emb|CCC86687.1| (putative RNA helicase, partial [Millerozyma farinosa] >gi|356871119|emb|CCC86688.1| putative RNA helicase, partial [Millerozyma farinosa] >gi|356871125|emb|CCC86691.1| putative RNA helicase, partial [Millerozyma farinosa] >gi|356871127|emb|CCC86692.1| putative RNA helicase, partial [Millerozyma farinosa]) HSP 1 Score: 192.586 bits (488), Expect = 2.500e-60 Identity = 87/120 (72.50%), Postives = 107/120 (89.17%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
MA +PF LD FQ++A+ LE+G++VFVAAHTSAGKTV+AEYAIA++ +MT+ +YTSPIKALSNQK+RDFKE F + DVGLITGDV +NPEA+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct: 28 MAREFPFELDTFQQEAIYHLEQGDSVFVAAHTSAGKTVIAEYAIAMAKRNMTKAIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFV 147
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|336087776|emb|CBN80533.1| (putative RNA helicase, partial [Millerozyma farinosa]) HSP 1 Score: 192.586 bits (488), Expect = 2.697e-60 Identity = 87/120 (72.50%), Postives = 107/120 (89.17%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
MA +PF LD FQ++A+ LE+G++VFVAAHTSAGKTV+AEYAIA++ +MT+ +YTSPIKALSNQK+RDFKE F + DVGLITGDV +NPEA+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct: 28 MAREFPFELDTFQQEAIYHLEQGDSVFVAAHTSAGKTVIAEYAIAMAKRNMTKAIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFV 147
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|669164214|ref|XP_008617669.1| (hypothetical protein SDRG_13364 [Saprolegnia diclina VS20] >gi|530730610|gb|EQC28852.1| hypothetical protein SDRG_13364 [Saprolegnia diclina VS20]) HSP 1 Score: 210.69 bits (535), Expect = 3.461e-60 Identity = 96/120 (80.00%), Postives = 108/120 (90.00%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
MAM++PF LD FQKQAV LE + VF+AAHTSAGKTVVAEYAIA+S HMTRT+YTSPIKALSNQKYRDF+ KFG +VGLITGDVS+NP+ASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct: 399 MAMSFPFELDSFQKQAVVHLENHDCVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGVDNVGLITGDVSINPQASCLVMTTEILRSMLYRGADVIRDIEWV 518
BLAST of EWM26992.1 vs. NCBI_GenBank
Match: gi|813156831|ref|XP_012201764.1| (hypothetical protein SPRG_06913 [Saprolegnia parasitica CBS 223.65] >gi|641533661|gb|KDO27642.1| hypothetical protein SPRG_06913 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 210.69 bits (535), Expect = 3.667e-60 Identity = 96/120 (80.00%), Postives = 108/120 (90.00%), Query Frame = 0
Query: 1 MAMTYPFPLDDFQKQAVARLERGENVFVAAHTSAGKTVVAEYAIALSATHMTRTVYTSPIKALSNQKYRDFKEKFGERDVGLITGDVSVNPEASCLIMTTEILRSMLYRGADIIRDIEWV 120
MAM++PF LD FQKQAV LE + VF+AAHTSAGKTVVAEYAIA+S HMTRT+YTSPIKALSNQKYRDF+ KFG +VGLITGDVS+NP+ASCL+MTTEILRSMLYRGAD+IRDIEWV
Sbjct: 375 MAMSFPFELDSFQKQAVVHLENHDCVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGVDNVGLITGDVSINPQASCLVMTTEILRSMLYRGADVIRDIEWV 494 The following BLAST results are available for this feature:
BLAST of EWM26992.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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