rna3675, rna3675 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3675
Unique Name	rna3675
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1312
Alignment location	CM002461.1:937969..940889 +

Link to JBrowse

Properties


Property Name	Value
Product	endosomal p24a protein
Orig transcript id	gnl\|cribi\|Naga_100079g7.10198.mrna
Orig protein id	gnl\|cribi\|Naga_100079g7.10198
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:937969..940889 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100079g7	gene3539	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3675	rna3675-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27009.1	cds3666	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:937969..940889+
coding sequence from alignment at CM002461.1:937969..940889+

mRNA sequence

>rna3675 ID=rna3675|Name=rna3675|organism=Nannochloropsis gaditana|type=mRNA|length=1312bp
TTGTAGCATATCTTGCCCACGGTAACATACTCCGAAAAGATTACCTTTCG
TCCTCACCCATGTACATTTTTGGAAAACTCAATCTTCCTTTTTTCCCTTC
ACTAAAAAGTCAACAGGCGAGATGGAGGCCCTTCAGTACAACCCCAGATG
GGCATCCGCCAACCCCAGCGGGCCCCCAATACAAGGATTTCGAAAAGGCC
TCCAATCATTGTGGCGTTTCATGCAGTACAATTCTATCTATACAGGCGTC
ATCATGTATGCATTATTCATCAGCATCCGTCACCTGCGCATGGTTGGAAA
ACAGCGCGGCCCATTTGTGTGGCAGGTGCAAGGGATTTCCCCCACCCACA
AAGGCTCTTGCTTTTGTTCTGCCAAGGACGATTTCTGCCTGTGCGGCCCC
TCGGTCGCCGTGGACGCTATTTTGGAGTACAGTGAGACCAAGGAAGGCCC
CGTGACGGCCCTTGTCTTCATTAAAAGAAGGGATAGATCGATTACAGCCT
GTGTGGGCGGATTTGTTCAGCTAGGAGAGACCACGGAAGAAGCTTTGCAT
CGCGAGGTGCAGGAAGAGATCGGCACGAACACCCTTCACTCCGTCCGTCT
AATTGGCGTCTACAGCCATCCTGATCGGGATGACCGGCGGCACACGATCA
GTGCTGCTTACGTTGGGAGAGTCTACGGGCGACTCAAAGCAGGCGATGAC
GCGAAGAGCATTTCGGTTATCCCTTTGAAGGTGATGAATGTGGAGCTTAT
CAAGCTTGGCTTCGATCACGGCGACATTCTAAGAAGCTATTGGTACGACA
GGAATCAATCGAGAACAGTCTTGGCCCCAAAGAGAGGGACAAGCACATGC
CCAGCGCCCTACCCAGTTGACTCATAGCCCTTGTATGCAAACTGTAAATT
CCTCAAATGGTGTGAAATTACAAGGGGCACACGGCAGAAAGGTTGGTTTT
ATGAAAGTACTGAAATGAATCCCTTAATGCGGCACATATTCCCCAGCCAC
GTGGTCATTAAGGCCCGCACTCTAGTTTTTCGGCGATGAACTTGCTCTGT
TTTTTGCACATTTACTGAGAATAGGCCCTTTTACAAATAAGGAGCCTAAG
AAATTTCCTAGAAGCTGTAGTACGCCACTAAGACACTAAGACAAGGCGGA
ACAGTACTATTTGGATACTTCGAAGCATCTTATTTTCTTCTTAGGTTTTG
CACTACGTCGGCACCATTTCACCCCACAAGCCAAGCCCGGTGTGTCGATG
ACAAGAAAGCTTGTTATTCCACGAGTCAAATCAGAAAGTGTACCCTTTCT
CAAAAACATAGA

protein sequence of rna3675

>rna3675-protein ID=rna3675-protein|Name=rna3675|organism=Nannochloropsis gaditana|type=polypeptide|length=637bp
MAPSRFHAAVALGAALAAPAATGFYLPGVAPTNFLEGQRVELKVNKITST
QTQIPYDYYSFPFCRPQNGVHHYGENLGEFLTGDRIENSPYELKMKVDQS
CTVLCSHTLTKGDVSKLKEAILEGYSHNWIIDNLPAASVTVDDVYQTTYY
SRGFLVGMTDEKQETFALHNHVRIFLDYHQKEGQNAFRVVGFRVRPYSID
HKVAEGSKGDTPTLSTCDGIDAGSTAPAQIKEGAVIYYTYDVQWEPSDVR
WASRWDIYLNMDHTKTDKVHWFSIANSALIVLFLTGMIAMILVRNLCRDI
TMYNRVPTEEERAEEREESGWKLVHADVFRAPASHPMLLAVMVGTGAQLL
MMAFCTIVFAAVGFLSPANRGALMIAVLLTYVLMGSVAGYVSARLYKTFK
GKQWQKCTVLTALWYPSICFSVFLCLDFIDVSYGSSGAVPFLEMLKLLTL
WFGISVPLVFMGAYLGYKRDVMTFPVVTSNIPRTIPDQPWYMSKAFIIMV
GGILPFGACFVELFFILTSMWLGAYYYVFGFLLLVFVILLLTCAEMTVVL
TYFQLCNEDYHWWWRSFLSAGSTGLYVLLYSGVYFFRTVQPNLFATYLLY
FGYMGIISLGIFLMTGCIGFAASLAFNRVIFASIKVD

mRNA from alignment at CM002461.1:937969..940889+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3675 ID=rna3675|Name=rna3675|organism=Nannochloropsis gaditana|type=mRNA|length=2921bp|location=Sequence derived from alignment at CM002461.1:937969..940889+ (Nannochloropsis gaditana)
TACATCACGCTTTGTGTCTTTGTGCGTATCAATCCTCTGCCAGCACAAGT
TGTTTGTGTTTGTTCAATCGGCGGCAGATGTGCGGCCGGGCGCATTCACT
TGTGGTAACAATAAGGAGAGGAGTGTTATCGTGTTCTGGACCCCCGAATG
ACAGGGGAGACCTTCGTTTCCCGTTCTGGCCTGGAAATTTATTGGCTGTT
CGCAGGCGCTGGATTTAAGTATGGGTCATGCGAGAGTTTGAATTACAATT
TGTTGATTTGCATTGCGGGAAGACGAACAGATAACCTGTGGGGATGCCAA
GCCGCTGTAGCAACCGCATCGCTTCATGGGCGCAGGGAGACGTGTCGTGC
GCGGGTCGTAAGCTTTGAATAGAGGAGCAAATACTCACCCCATGCACGCA
ATTTATTTGTCACAGGAATGGCTCCTTCGCGCTTCCATGCAGCAGTGGCT
CTAGGTGCCGCTCTGGCGGCGCCTGCAGCGACAGGCTTCTATCTACCGGG
TGTTGCCCCAACCAATTTTCTGGAGGGTCAACGCGTGGAGCTCAAGGTAA
TGAGCATGGCTATGTGTCGCAGCGCTCATGTTGGTGACGATGGGCTATGT
ATGCACTGCGAGGCGCCTGCTCACTGTAGTGGATCACGATGGCCTAATAC
TTCGCCTCTTGTCTCCCTTAATCTGAGTGTATGCGCCGGCACCCTGTCTT
CGTTGATGTCTTAACGTGTGACGCGACCATGCGTATTGCCCTTTTGAGCT
TGTGCACTCATTTCTCACTCCTCCCGTCTTGTTCTCGACGCATCTACAGG
TGAACAAGATCACTTCCACGCAGACTCAGATCCCGTATGACTATtactct
ttccccttctgccGCCCCCAGAATGGCGTGCACCACTACGGCGAGAACCT
GGGAGAGTTTTTAACGGGCGATCGCATTGAAAATAGCCCTTATGAGCTTA
AAATGAAAGTGGATCAATCATGCACCGTCCTCTGCTCCCACACGTTGACC
AAGGGCGATGTGAGCAAACTGAAAGAGGCCATATTGGAGGGGTACAGCCA
CAACTGGATCATTGACAATCTGCCCGCCGCGTCTGTGACCGTCGACGACG
TCTATCAGACCACGTACTATTCTCGAGGTTTCCTTGTGGGTATGACCGAT
GAGAAGCAGGAAACCTTCGCGCTGCACAACCACGTGCGGATTTTCCTCGA
CTACCATCAGAAGGAGGGCCAGAACGCCTTTCGTGTGGTCGGTTTCCGCG
TCCGTCCTTACTCCATCGACCACAAAGTGGCGGAAGGGAGCAAAGGCGAC
ACTCCCACCCTGTCCACTTGTGATGGAATCGACGCAGGCTCAACGGCCCC
GGCTCAaatcaaggagggggcggtgatTTACTACACCTACGACGTCCAAT
GGGAGCCAAGCGATGTTCGATGGGCGAGTCGCTGGGACATTTACCTGAAC
ATGGATCACACCAAGACGGACAAGGTGCATTGGTTCTCCATTGCCAACTC
GGCTCTGATTGTCCTTTTCCTGACCGGGATGATTGCCATGATCCTTGTGC
GCAACTTATGTCGAGACATCACCATGTACAACCGGGTGCctacggaggag
gaacgggcagaggagcgggaagagAGTGGCTGGAAACTTGTGCACGCGGA
CGTTTTCCGCGCTCCTGCCTCGCACCCCATGCTGCTCGCGGTCATGGTGG
GTACAGGCGCCCAGCTGTTGATGATGGCGTTCTGCACCATCGTTTTCGCA
GCCGTAGGCTTCCTTTCTCCGGCAAATCGGGGCGCGCTCATGATTGCTGT
CCTATTGACCTACGTCTTGATGGGCTCCGTCGCTGGGTATGTCTCAGCGC
GGCTGTACAAGACTTTCAAGGGGAAGCAGTGGCAGAAGTGCACGGTCCTG
ACGGCCTTGTGGTACCCGTCCATATGTTTCTCGGTCTTCCTTTGCCTGGA
CTTTATCGACGTTTCCTACGGTTCGTCCGGCGCCGTCCCATTTTTGGAAA
TGCTGAAGCTCCTGACTCTGTGGTTCGGTATCAGCGttcccctcgtcttc
atggGAGCCTACTTGGGCTACAAACGCGACGTCATGACCTTTCCTGTCGT
CACCTCCAACATCCCTCGCACCATACCTGACCAACCCTGGTACATGTCGA
AGGCCTTCATCATCATGGTGGGCGGCATTCTGCCTTTTGGCGCCTGCTTT
GTCGAGCTTTTCTTCATTCTGACCTCGATGTGGCTCGGGGCCTACTACTA
CGTCTTCGGTTTCCTGCTCCTTGTCTTCGTCATACTCCTCCTTACCTGCG
CGGAAATGACCGTCGTCTTGACGTATTTCCAGCTCTGCAATGAGGATTAC
CACTGGTGGTGgcgctccttcctctctgcggGCTCGACGGGTCTGTACGT
GCTATTGTATTCAGGAGTCTACTTCTTCCGCACAGTGCAGCCGAACTTAT
TTGCAACCTACCTCCTGTACTTCGGTTACATGGGAATAATTTCTCTTGGA
ATCTTCTTAATGACGGGCTGCATCGGTTTCGCAGCAAGCCTGGCATTCAA
TCGCGTGATCTTTGCATCCATTAAGGTGGACTAAattgaggaggaaaata
taCCGATGCCCTAGCAACTTACTTGAAGAATATCGCGTGATCCTGCAGGA
TACAGTGTCATATGTCCACATTTAGACAGCAAAAAAGACACCGTGATGAA
GGGGACCTTTAACAAAGCATAGTGGTCTCTAATAGGTTACGGATATCCTT
CTGTCACGAGAGGGGCCCGAGATGGAAATGGTACACTACGCATGTTAAGT
GGAAAGAAGAAACTCAACACGGCGATCCTTTTGGACATAAGTGGTGTTTA
GAGTTAGTTTAATACGAGTGCCCTTCGCGATTAAGAGAGAAATTCAGGAA
TGAAATAGATGCAGAATTCCC

Coding sequence (CDS) from alignment at CM002461.1:937969..940889+

>rna3675 ID=rna3675|Name=rna3675|organism=Nannochloropsis gaditana|type=CDS|length=3828bp|location=Sequence derived from alignment at CM002461.1:937969..940889+ (Nannochloropsis gaditana)
ATGGCTCCTTCGCGCTTCCATGCAGCAGTGGCTCTAGGTGCCGCTCTGGC
GGCGCCTGCAGCGACAGGCTTCTATCTACCGGGTGTTGCCCCAACCAATT
TTCTGGAGGGTCAACGCGTGGAGCTCAAGGTGAACAAGATCACTTCCACG
CAGACTCAGATCCCGTATGACTATtactctttccccttctgccGCCCCCA
GAATGGCGTGCACCACTACGGCGAGAACCTGGGAGAGTTTTTAACGGGCG
ATCGCATTGAAAATAGCCCTTATGAGCTTAAAATGAAAGTGGATCAATCA
TGCACCGTCCTCTGCTCCCACACGTTGACCAAGGGCGATGTGAGCAAACT
GAAAGAGGCCATATTGGAGGGGTACAGCCACAACTGGATCATTGACAATC
TGCCCGCCGCGTCTGTGACCGTCGACGACGTCTATCAGACCACGTACTAT
TCTCGAGGTTTCCTTGTGGGTATGACCGATGAGAAGCAGGAAACCTTCGC
GCTGCACAACCACGTGCGGATTTTCCTCGACTACCATCAGAAGGAGGGCC
AGAACGCCTTTCGTGTGGTCGGTTTCCGCGTCCGTCCTTACTCCATCGAC
CACAAAGTGGCGGAAGGGAGCAAAGGCGACACTCCCACCCTGTCCACTTG
TGATGGAATCGACGCAGGCTCAACGGCCCCGGCTCAaatcaaggaggggg
cggtgatTTACTACACCTACGACGTCCAATGGGAGCCAAGCGATGTTCGA
TGGGCGAGTCGCTGGGACATTTACCTGAACATGGATCACACCAAGACGGA
CAAGGTGCATTGGTTCTCCATTGCCAACTCGGCTCTGATTGTCCTTTTCC
TGACCGGGATGATTGCCATGATCCTTGTGCGCAACTTATGTCGAGACATC
ACCATGTACAACCGGGTGCctacggaggaggaacgggcagaggagcggga
agagAGTGGCTGGAAACTTGTGCACGCGGACGTTTTCCGCGCTCCTGCCT
CGCACCCCATGCTGCTCGCGGTCATGGTGGGTACAGGCGCCCAGCTGTTG
ATGATGGCGTTCTGCACCATCGTTTTCGCAGCCGTAGGCTTCCTTTCTCC
GGCAAATCGGGGCGCGCTCATGATTGCTGTCCTATTGACCTACGTCTTGA
TGGGCTCCGTCGCTGGGTATGTCTCAGCGCGGCTGTACAAGACTTTCAAG
GGGAAGCAGTGGCAGAAGTGCACGGTCCTGACGGCCTTGTGGTACCCGTC
CATATGTTTCTCGGTCTTCCTTTGCCTGGACTTTATCGACGTTTCCTACG
GTTCGTCCGGCGCCGTCCCATTTTTGGAAATGCTGAAGCTCCTGACTCTG
TGGTTCGGTATCAGCGttcccctcgtcttcatggGAGCCTACTTGGGCTA
CAAACGCGACGTCATGACCTTTCCTGTCGTCACCTCCAACATCCCTCGCA
CCATACCTGACCAACCCTGGTACATGTCGAAGGCCTTCATCATCATGGTG
GGCGGCATTCTGCCTTTTGGCGCCTGCTTTGTCGAGCTTTTCTTCATTCT
GACCTCGATGTGGCTCGGGGCCTACTACTACGTCTTCGGTTTCCTGCTCC
TTGTCTTCGTCATACTCCTCCTTACCTGCGCGGAAATGACCGTCGTCTTG
ACGTATTTCCAGCTCTGCAATGAGGATTACCACTGGTGGTGgcgctcctt
cctctctgcggGCTCGACGGGTCTGTACGTGCTATTGTATTCAGGAGTCT
ACTTCTTCCGCACAGTGCAGCCGAACTTATTTGCAACCTACCTCCTGTAC
TTCGGTTACATGGGAATAATTTCTCTTGGAATCTTCTTAATGACGGGCTG
CATCGGTTTCGCAGCAAGCCTGGCATTCAATCGCGTGATCTTTGCATCCA
TTAAGGTGGACTAAATGGCTCCTTCGCGCTTCCATGCAGCAGTGGCTCTA
GGTGCCGCTCTGGCGGCGCCTGCAGCGACAGGCTTCTATCTACCGGGTGT
TGCCCCAACCAATTTTCTGGAGGGTCAACGCGTGGAGCTCAAGGTGAACA
AGATCACTTCCACGCAGACTCAGATCCCGTATGACTATtactctttcccc
ttctgccGCCCCCAGAATGGCGTGCACCACTACGGCGAGAACCTGGGAGA
GTTTTTAACGGGCGATCGCATTGAAAATAGCCCTTATGAGCTTAAAATGA
AAGTGGATCAATCATGCACCGTCCTCTGCTCCCACACGTTGACCAAGGGC
GATGTGAGCAAACTGAAAGAGGCCATATTGGAGGGGTACAGCCACAACTG
GATCATTGACAATCTGCCCGCCGCGTCTGTGACCGTCGACGACGTCTATC
AGACCACGTACTATTCTCGAGGTTTCCTTGTGGGTATGACCGATGAGAAG
CAGGAAACCTTCGCGCTGCACAACCACGTGCGGATTTTCCTCGACTACCA
TCAGAAGGAGGGCCAGAACGCCTTTCGTGTGGTCGGTTTCCGCGTCCGTC
CTTACTCCATCGACCACAAAGTGGCGGAAGGGAGCAAAGGCGACACTCCC
ACCCTGTCCACTTGTGATGGAATCGACGCAGGCTCAACGGCCCCGGCTCA
aatcaaggagggggcggtgatTTACTACACCTACGACGTCCAATGGGAGC
CAAGCGATGTTCGATGGGCGAGTCGCTGGGACATTTACCTGAACATGGAT
CACACCAAGACGGACAAGGTGCATTGGTTCTCCATTGCCAACTCGGCTCT
GATTGTCCTTTTCCTGACCGGGATGATTGCCATGATCCTTGTGCGCAACT
TATGTCGAGACATCACCATGTACAACCGGGTGCctacggaggaggaacgg
gcagaggagcgggaagagAGTGGCTGGAAACTTGTGCACGCGGACGTTTT
CCGCGCTCCTGCCTCGCACCCCATGCTGCTCGCGGTCATGGTGGGTACAG
GCGCCCAGCTGTTGATGATGGCGTTCTGCACCATCGTTTTCGCAGCCGTA
GGCTTCCTTTCTCCGGCAAATCGGGGCGCGCTCATGATTGCTGTCCTATT
GACCTACGTCTTGATGGGCTCCGTCGCTGGGTATGTCTCAGCGCGGCTGT
ACAAGACTTTCAAGGGGAAGCAGTGGCAGAAGTGCACGGTCCTGACGGCC
TTGTGGTACCCGTCCATATGTTTCTCGGTCTTCCTTTGCCTGGACTTTAT
CGACGTTTCCTACGGTTCGTCCGGCGCCGTCCCATTTTTGGAAATGCTGA
AGCTCCTGACTCTGTGGTTCGGTATCAGCGttcccctcgtcttcatggGA
GCCTACTTGGGCTACAAACGCGACGTCATGACCTTTCCTGTCGTCACCTC
CAACATCCCTCGCACCATACCTGACCAACCCTGGTACATGTCGAAGGCCT
TCATCATCATGGTGGGCGGCATTCTGCCTTTTGGCGCCTGCTTTGTCGAG
CTTTTCTTCATTCTGACCTCGATGTGGCTCGGGGCCTACTACTACGTCTT
CGGTTTCCTGCTCCTTGTCTTCGTCATACTCCTCCTTACCTGCGCGGAAA
TGACCGTCGTCTTGACGTATTTCCAGCTCTGCAATGAGGATTACCACTGG
TGGTGgcgctccttcctctctgcggGCTCGACGGGTCTGTACGTGCTATT
GTATTCAGGAGTCTACTTCTTCCGCACAGTGCAGCCGAACTTATTTGCAA
CCTACCTCCTGTACTTCGGTTACATGGGAATAATTTCTCTTGGAATCTTC
TTAATGACGGGCTGCATCGGTTTCGCAGCAAGCCTGGCATTCAATCGCGT
GATCTTTGCATCCATTAAGGTGGACTAA

Synonyms

Publications