rna3674, rna3674 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3674
Unique Name	rna3674
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2538
Alignment location	CM002461.1:935988..937678 +

Link to JBrowse

Properties


Property Name	Value
Product	nudix hydrolase
Orig transcript id	gnl\|cribi\|Naga_100079g6.10193.mrna
Orig protein id	gnl\|cribi\|Naga_100079g6.10193
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:935988..937678 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100079g6	gene3538	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3674	rna3674-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27004.1	cds3665	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:935988..937678+
coding sequence from alignment at CM002461.1:935988..937678+

mRNA sequence

>rna3674 ID=rna3674|Name=rna3674|organism=Nannochloropsis gaditana|type=mRNA|length=2538bp
TCTTTTCGGAGTATGTTACCGTGGGCAAGATATGCTACAATAAACATATA
TTTTTGGGGGGTTACGGGGGACTGGAAAAGAATTATAGGAGTGGAAGGGC
GGGGCGGGCAATAATTCCCTAGACTGGGACAACACTGCCGCAATTTCACG
CATAAACATTCAACAAAAAGCGAGGCATCGGTGACTTCCCTCTCCACAGT
CCCGCGCTGGGGAAAAACCGGGGGAAATGTGCCAGTTGAGGTGCCCGCCT
ACCCAGTGGTGTTTGTAGCGTCAATGTATGACCCGAATCTTACGGCAAGC
CGATGCGACGGTCAGGACCTGGATGTGGGCTGGCTTTCCATCACCATGGT
CCCACACCGCCGTCCGGGTGCTGGATGATTGGGGTTTCCATCCCACACAC
GACGCGGAGTGCTGGACAGGCTTGGGATTCGTGGGGTTGGTCACTACGCT
GAGGTCATTTTGACCGCCGGGTGCAAATGCGCTGCCCGTCCACTCTGAAG
TTTCTTTCCTTTTTGATCAGGGTCCACGCCGGTCCAGGGAATGGAGACGC
CTGCCTACATTTTTCACAGGCTACCACGCAACATTATTTTTATTACTATT
TTTGTGGTTGGGATGTAATTACGGGTTTCTAGGCGCCGAAATTTCTACAG
GGAAAGAAGCCTGTTTTTTTCTTGGTTGCCATCCCTTGACTCCTCATCTG
AAGTGCTCACTTTGCTCTTTCCTCTCTTCTGCCACGCTCTCAGGCACCAT
GTCACCACGATCAATGCCCGTTCTACTGGTTGCCGTGCTTGCAGTCCTCT
GCACAGCGTCGGTCACCGCCTTTCATACTCCCTCTTCTCCTTCTGCCCCC
AGCATTTGGGGAGCGAAACGCGGCGCAGCTTCAGCTGCTGCTCTCACCAG
GCGCCATCAAGCCGCTGCAGATGGCGAGGCAGTCGAAAACGTCTTGTCTC
CCAAGCAAGAACGGCGTCGCATTATCCAGTCGCCCAACTTTCACCGGCAA
GGGTTCAAGGCTGAAAGCGAGGGGGTGGAAAGCCAGATGGTTTCAGAATT
CACTTCCCAACTCATCAACGAGATGAAGGACTCGACATACACCTTCCAAA
AGGGAGACTTGACAATTAAACTGGCAAAGAGCTTCGGATTCTGCTGGGGC
GTGGAGCGTGCGGTCGCTATGGCTTATGAGGCGCGTGCGCATTTCCCTGA
GCAACGCATCCATATCACGAACGAAATCATTCACAATCCTGGTGTGAACG
AACGTTTGGCAGACATGAACATCGACTTTCTGCCTGTCGACGAAGGTAAA
AAACAGTTTGAGCATATCGAGAAGGACGACGTGGTGATCCTCCCTGCATT
TGGGGCGACGATTCAAGAGATGCAGCTCTTGGACAAGAAGGGGGTACAGA
TCGTGGATACCACATGCCCGTGGGTAGCAAAGGTCTGGACCGCGGTTGAG
AAGCACCGAAAATTGGAGAGCACGAGTGTGATTCATGGGAAGTGGAACCA
TGAGGAGACCATCGCCACGGCCAGTTTTGCGGACGTTTACATCATCGTGA
AGGATATTCACGAAGCGGAGTACGTCTGTAACTACATTGTGAACGGAGGA
GACAAGGCAGAGTTCATGGAGAAATTCAAAAATGCCGTGAGCGAAGGCTT
CGACCCGGACGTGGACCTGGAGAAGGTAGGACTGGCGAACCAGACGACCA
TGTACAAGCGTGAGACGCGAGCCATAGGGAAGCTGTTTGAGAAGACGATG
ATGCACAAGTATGGACCAGCAGAGGTCAAGAATCACTACGCGGAATTTGA
CACGATTTGCGACGCCACGCAAGAGCGGCAAGATGCCATCACGGACCTGA
TGGAAGAGAAACTGGACTTCATCTTGATCGTGGGCGGCTTCGACTCGAGC
AACACGGCGCACTTGAAGGAAATACCGCACATGCAGCACATTCCCTCCTT
CCACATTGATCGGGCCGAGCGGATCTCCGCCGATGGCTCCATCGAACACC
GGGAGATCGACGGCTCGATCGTCAAAACGGCAAACTTTCTCCCCGACGGG
CCCTTGACGATCGGAGTGACCTCCGGGGCCTCAACCCCCGACGCCTACCT
TCAGGAAGCGATCGAACGCTTATTCTTGTTGCGGACTTTGAAGGGCCAAG
AGGCTCCCCAGAAAGATACAGTGAATGCGTGAGCCTTGGGAAAAGGGGGA
GGGGGCCAATGGAGGGAACGGCCAGTGCCAGTGTGGCGTGCCTCGGGAGG
AGGCGGATGCCTGGATGAAGGAAGTCTGTAGCATACTTTTTTTTACATTT
GAAGCGTACGGGAGGCGTCACGGTCCCCGTTAATGATAGTTGTGTTTCCC
CCAGTCAGTTTAATGCTGCACGCTGAGGACAGAGTAAAAGATGAACAAAA
ATGATGTCACGGTCGCGTGTGTCAAGACACGGGGAGTTTGGGTGAGGGGA
GTCACGACGTGGGCGAACAGGCCACTCGGTAGGGTGGGGATGACATGATA
CCGTAATTGAAAGAAGAACCAAAACTTTGACATAACGA

protein sequence of rna3674

>rna3674-protein ID=rna3674-protein|Name=rna3674|organism=Nannochloropsis gaditana|type=polypeptide|length=251bp
MEALQYNPRWASANPSGPPIQGFRKGLQSLWRFMQYNSIYTGVIMYALFI
SIRHLRMVGKQRGPFVWQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAI
LEYSETKEGPVTALVFIKRRDRSITACVGGFVQLGETTEEALHREVQEEI
GTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVI
PLKVMNVELIKLGFDHGDILRSYWYDRNQSRTVLAPKRGTSTCPAPYPVD
S

mRNA from alignment at CM002461.1:935988..937678+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3674 ID=rna3674|Name=rna3674|organism=Nannochloropsis gaditana|type=mRNA|length=1691bp|location=Sequence derived from alignment at CM002461.1:935988..937678+ (Nannochloropsis gaditana)
TTGTAGCATATCTTGCCCACGGTAACATACTCCGAAAAGATTACCTTTCG
TCCTCACCCATGTACATTTTTGGAAAACTcaatcttccttttttcccttc
acTAAAAAGTCAACAGGCGAGATGGAGGCCCTTCAGTACAACCCCAGATG
GGCATCCGCCAACCCCAGCGGGCCCCCAATACAAGGATTTCGAAAAGGCC
TCCAATCATTGTGGCGTTTCATGCAGTACAATTCTATCTATACAGGTGTG
TGGCAtatggaggaaaggcatgaaggagggactgTGCTACATTGGTGATA
TTGCCGCTTGTGGCTCTATTACCCTGTCACCGCTTAATTTTTCGCTTGCT
GTAGTATGGCTCGGTAAAAGAGTCTCCGACAACGTCAATTTTCTCATTTG
TGTTGCCACTATGAGCTTTTTAGCTGTATGTCATTTTTTGGTGAAAGTCG
CGTGCCTTGAGAGAGCACAGGCTTACCTTTCTGAAATACTTCTTCCCAGG
CGTCATCATGTATGCATTATTCATCAGCATCCGTCACCTGCGCATGGTTG
GAAAACAGCGCGGCCCATTTGTGTGGCAGGTGCAAGGGATTTCCCCCACC
CACAAAGGCTCTTGCTTTTGTTCTGCCAAGGACGATTTCTGCCTGTGCGG
CCCCTCGGTCGCCGTGGACGCTATTTTGGAGTACAGTGAGACCAAGGAAG
GCCCCGTGACGGCCCTTGTCTTCATTAAAAGAAGGGATAGATCGATTACA
GCCTGTGTGGGCGGATTTGTTCAGCTAGGTGAGGTATACCGTCCTTTTCT
ACAATCCACCACAAAGTCTCTCCATGACAAGTAATCCTAACCCTACACGG
CCTGCCAgccctctcatcctccttctgaATTCCCTCGTCTTCACGTCCGA
CAGGAGAGACCACGGAAGAAGCTTTGCATCGCGAGGTGCAGGAAGAGATC
GGCACGAACACCCTTCACTCCGTCCGTCTAATTGGCGTCTACAGCCATCC
TGATCGGGATGACCGGCGGCACACGATCAGTGCTGCTTACGTTGGGAGAG
TCTACGGGCGACTCAAAGCAGGCGATGACGCGAAGAGCATTTCGGTTATC
CCTTTGAAGGTGATGAATGTGGAGCTTATCAAGCTTGGCTTCGATCACGG
CGACATTCTAAGAAGCTATTGGTACGACAGGAATCAATCGAGAACAGTCT
TGGCCCCAAAGAGAGGGACAAGCACATGCCCAGCGCCCTACCCAGTTGAC
TCATAGCCCTTGTATGCAAACTGTAAATTCCTCAAATGGTGTGAAATTAC
AAGGGGCACACGGCAGAAAGGTTGGTTTTATGAAAGTACTGAAATGAATC
CCTTAATGCGGCACATATTCCCCAGCCACGTGGTCATTAAGGCCCGCACT
CTAGTTTTTCGGCGATGAACTTGCTCTGTTTTTTGCACATTTACTGAGAA
TAGGCCCTTTTACAAATAAGGAGCCTAAGAAATTTCCTAGAAGCTGTAGT
ACGCCACTAAGACACTAAGACAAGGCGGAACAGTACTATTTGGATACTTC
GAAGCATCTTATTTTCTTCTTAGGTTTTGCACTACGTCGGCACCATTTCA
CCCCACAAGCCAAGCCCGGTGTGTCGATGACAAGAAAGCTTGTTATTCCA
CGAGTCAAATCAGAAAGTGTACCCTTTCTCAAAAACATAGA

Coding sequence (CDS) from alignment at CM002461.1:935988..937678+

>rna3674 ID=rna3674|Name=rna3674|organism=Nannochloropsis gaditana|type=CDS|length=2268bp|location=Sequence derived from alignment at CM002461.1:935988..937678+ (Nannochloropsis gaditana)
ATGGAGGCCCTTCAGTACAACCCCAGATGGGCATCCGCCAACCCCAGCGG
GCCCCCAATACAAGGATTTCGAAAAGGCCTCCAATCATTGTGGCGTTTCA
TGCAGTACAATTCTATCTATACAGGCGTCATCATGTATGCATTATTCATC
AGCATCCGTCACCTGCGCATGGTTGGAAAACAGCGCGGCCCATTTGTGTG
GCAGGTGCAAGGGATTTCCCCCACCCACAAAGGCTCTTGCTTTTGTTCTG
CCAAGGACGATTTCTGCCTGTGCGGCCCCTCGGTCGCCGTGGACGCTATT
TTGGAGTACAGTGAGACCAAGGAAGGCCCCGTGACGGCCCTTGTCTTCAT
TAAAAGAAGGGATAGATCGATTACAGCCTGTGTGGGCGGATTTGTTCAGC
TAGGAGAGACCACGGAAGAAGCTTTGCATCGCGAGGTGCAGGAAGAGATC
GGCACGAACACCCTTCACTCCGTCCGTCTAATTGGCGTCTACAGCCATCC
TGATCGGGATGACCGGCGGCACACGATCAGTGCTGCTTACGTTGGGAGAG
TCTACGGGCGACTCAAAGCAGGCGATGACGCGAAGAGCATTTCGGTTATC
CCTTTGAAGGTGATGAATGTGGAGCTTATCAAGCTTGGCTTCGATCACGG
CGACATTCTAAGAAGCTATTGGTACGACAGGAATCAATCGAGAACAGTCT
TGGCCCCAAAGAGAGGGACAAGCACATGCCCAGCGCCCTACCCAGTTGAC
TCATAGATGGAGGCCCTTCAGTACAACCCCAGATGGGCATCCGCCAACCC
CAGCGGGCCCCCAATACAAGGATTTCGAAAAGGCCTCCAATCATTGTGGC
GTTTCATGCAGTACAATTCTATCTATACAGGCGTCATCATGTATGCATTA
TTCATCAGCATCCGTCACCTGCGCATGGTTGGAAAACAGCGCGGCCCATT
TGTGTGGCAGGTGCAAGGGATTTCCCCCACCCACAAAGGCTCTTGCTTTT
GTTCTGCCAAGGACGATTTCTGCCTGTGCGGCCCCTCGGTCGCCGTGGAC
GCTATTTTGGAGTACAGTGAGACCAAGGAAGGCCCCGTGACGGCCCTTGT
CTTCATTAAAAGAAGGGATAGATCGATTACAGCCTGTGTGGGCGGATTTG
TTCAGCTAGGAGAGACCACGGAAGAAGCTTTGCATCGCGAGGTGCAGGAA
GAGATCGGCACGAACACCCTTCACTCCGTCCGTCTAATTGGCGTCTACAG
CCATCCTGATCGGGATGACCGGCGGCACACGATCAGTGCTGCTTACGTTG
GGAGAGTCTACGGGCGACTCAAAGCAGGCGATGACGCGAAGAGCATTTCG
GTTATCCCTTTGAAGGTGATGAATGTGGAGCTTATCAAGCTTGGCTTCGA
TCACGGCGACATTCTAAGAAGCTATTGGTACGACAGGAATCAATCGAGAA
CAGTCTTGGCCCCAAAGAGAGGGACAAGCACATGCCCAGCGCCCTACCCA
GTTGACTCATAGATGGAGGCCCTTCAGTACAACCCCAGATGGGCATCCGC
CAACCCCAGCGGGCCCCCAATACAAGGATTTCGAAAAGGCCTCCAATCAT
TGTGGCGTTTCATGCAGTACAATTCTATCTATACAGGCGTCATCATGTAT
GCATTATTCATCAGCATCCGTCACCTGCGCATGGTTGGAAAACAGCGCGG
CCCATTTGTGTGGCAGGTGCAAGGGATTTCCCCCACCCACAAAGGCTCTT
GCTTTTGTTCTGCCAAGGACGATTTCTGCCTGTGCGGCCCCTCGGTCGCC
GTGGACGCTATTTTGGAGTACAGTGAGACCAAGGAAGGCCCCGTGACGGC
CCTTGTCTTCATTAAAAGAAGGGATAGATCGATTACAGCCTGTGTGGGCG
GATTTGTTCAGCTAGGAGAGACCACGGAAGAAGCTTTGCATCGCGAGGTG
CAGGAAGAGATCGGCACGAACACCCTTCACTCCGTCCGTCTAATTGGCGT
CTACAGCCATCCTGATCGGGATGACCGGCGGCACACGATCAGTGCTGCTT
ACGTTGGGAGAGTCTACGGGCGACTCAAAGCAGGCGATGACGCGAAGAGC
ATTTCGGTTATCCCTTTGAAGGTGATGAATGTGGAGCTTATCAAGCTTGG
CTTCGATCACGGCGACATTCTAAGAAGCTATTGGTACGACAGGAATCAAT
CGAGAACAGTCTTGGCCCCAAAGAGAGGGACAAGCACATGCCCAGCGCCC
TACCCAGTTGACTCATAG

Synonyms

Publications