EWM27004.1, cds3665 (CDS) Nannochloropsis gaditana

Overview
NameEWM27004.1
Unique Namecds3665
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:936109..936232 +
Alignment locationCM002461.1:936487..936765 +
Alignment locationCM002461.1:936891..937243 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27004.1
Productnudix hydrolase
Orig transcript idgnl|cribi|Naga_100079g6.10193.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:936109..936232 +
CM002461.1supercontigCM002461.1:936487..936765 +
CM002461.1supercontigCM002461.1:936891..937243 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR020084NUDIX_hydrolase_CS
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase_dom-like
Homology
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|585109174|gb|EWM27004.1| (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 525.013 bits (1351), Expect = 0.000e+0
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
Query:    1 MEALQYNPRWASANPSGPPIQGFRKGLQSLWRFMQYNSIYTGVIMYALFISIRHLRMVGKQRGPFVWQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSITACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYWYDRNQSRTVLAPKRGTSTCPAPYPVDS 251
            MEALQYNPRWASANPSGPPIQGFRKGLQSLWRFMQYNSIYTGVIMYALFISIRHLRMVGKQRGPFVWQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSITACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYWYDRNQSRTVLAPKRGTSTCPAPYPVDS
Sbjct:    1 MEALQYNPRWASANPSGPPIQGFRKGLQSLWRFMQYNSIYTGVIMYALFISIRHLRMVGKQRGPFVWQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSITACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYWYDRNQSRTVLAPKRGTSTCPAPYPVDS 251          
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|298707680|emb|CBJ25997.1| (MutT-like protein [Ectocarpus siliculosus])

HSP 1 Score: 121.324 bits (303), Expect = 2.799e-30
Identity = 57/135 (42.22%), Postives = 82/135 (60.74%), Query Frame = 0
Query:   90 LCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSITACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYW 224
            +C PS+A+D ++E S+   G V +++ ++R+D    AC+GGFV++GET EEA  REV+EE G        L  +Y  P RD RRHT+S AYV R  G  +AG DA ++  IPL  +   + +  FDHG I+  Y 
Sbjct:    1 MCTPSLAIDTVVEVSDPATGEVGSVLVVRRKDNGKLACIGGFVEVGETLEEATRREVREETGLEVTSLQMLPQMYDDPARDARRHTVSVAYVARTTGTPRAGSDAAAVVSIPLASLGETVGEFAFDHGQIMTDYL 135          
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|1210524420|dbj|GAX16678.1| (hypothetical protein FisN_21Hu117 [Fistulifera solaris])

HSP 1 Score: 110.923 bits (276), Expect = 5.601e-26
Identity = 66/160 (41.25%), Postives = 87/160 (54.37%), Query Frame = 0
Query:   67 WQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSITACVGGFVQLGETTEEALHREVQEEIGTNTLHSV-RLIGVYSHPDRDDRRHTISAAYVGRVYG--RLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSY 223
            W     S  H GSC+C   D +CLC PS+A+D ++            +  ++R+D S  A VGGFVQ+GE+ EEA+ RE+ EE G  T+ S  RLIG+YS P RD+RRHT+S  Y   + G    +A DD K +  IP     VE      DH  IL  Y
Sbjct:   59 WHGGHPSDAHAGSCWCGDTDGYCLCTPSLAIDLVVMTGRDH------VWLVRRKDTSQLATVGGFVQMGESVEEAVLRELAEETGIKTIPSRPRLIGIYSDPRRDNRRHTVSVTYAIHLDGTEHPEAADDVKEVIKIPFS--EVENHTYFADHKTILLDY 210          
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|1055713312|ref|WP_067329558.1| (NUDIX hydrolase [Sulfurovum riftiae] >gi|1008705937|gb|KYJ87030.1| NUDIX hydrolase [Sulfurovum riftiae])

HSP 1 Score: 101.679 bits (252), Expect = 1.759e-23
Identity = 60/139 (43.17%), Postives = 83/139 (59.71%), Query Frame = 0
Query:   93 PSVAVDAILEYSETKEGPVTALVFIKRRDRSI-TACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYWYDRNQS 230
            P VAVD I+   +  E     +V I+R++  +  A  GGFV +GE+ E AL RE++EEI  + +  +RL+GVYS P RD R HT+SA Y+ + YG  KA DDAK   V P   + +E  KL FDH  I++ +   R QS
Sbjct:    6 PFVAVDGIVMLYDRNEA-FKGIVLIERKNPPLGIALPGGFVDIGESCESALVREMKEEISLD-VEIIRLLGVYSDPKRDPRFHTVSAVYICKAYGEPKAADDAKKCFVYPPDEIPME--KLVFDHAKIIKDFMATRYQS 140          
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|499570451|ref|WP_011251234.1| (NUDIX hydrolase [Thermococcus kodakarensis] >gi|57160543|dbj|BAD86473.1| probable 8-oxo-dGTPase, MutT homolog, NUDIX hydrolase family [Thermococcus kodakarensis KOD1])

HSP 1 Score: 102.064 bits (253), Expect = 2.685e-23
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 0
Query:   95 VAVDAILEYSETKEGPVTALVFIKRRDRSIT---ACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPL-KVMNVELIKLGFDHGDILRS 222
            + VDA++ Y+         +V IKR++       A  GGFV+ GET EEAL REV+EE G + +  V+L+GVYS PDRD R HT++ A++    G LKAGDDAK + V P+ + +N   + L FDHG+ILR 
Sbjct:   42 LTVDAVIVYN-------NGIVLIKRKNEPFKDHYALPGGFVEYGETVEEALLREVKEETGLD-VKPVKLVGVYSRPDRDPRGHTVTVAFLCIGEGELKAGDDAKEVFVFPIEEALN---LPLAFDHGEILRD 162          
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|1011493561|ref|WP_062388238.1| (NUDIX hydrolase [Thermococcus peptonophilus] >gi|1005658165|gb|AMQ18386.1| NUDIX hydrolase [Thermococcus peptonophilus])

HSP 1 Score: 101.679 bits (252), Expect = 2.923e-23
Identity = 61/133 (45.86%), Postives = 84/133 (63.16%), Query Frame = 0
Query:   95 VAVDAILEYSETKEGPVTALVFIKRRD---RSITACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIK--LGFDHGDILRS 222
            + VDA++ Y+         +V IKR++   +   A  GGFV+ GET EEAL REV+EE G + +  V+L+GVYS PDRD R HT++ A++    G LKAGDDAK + V P++    E +K  L FDHG+ILR 
Sbjct:   42 LTVDAVIVYN-------NGIVLIKRKNEPFKDYYALPGGFVEYGETVEEALLREVKEETGLD-VKPVKLVGVYSRPDRDPRGHTVTVAFLCIGEGELKAGDDAKEVFVFPIE----EALKLPLAFDHGEILRD 162          
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|851287202|ref|WP_048150956.1| (NUDIX hydrolase [Thermococcus sp. AM4])

HSP 1 Score: 100.908 bits (250), Expect = 6.861e-23
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0
Query:   59 GKQRGPFVWQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSIT---ACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYWYDRN 228
            G +   F  +V+ ++  H       A+   C+    + VD ++ Y+         +V IKR+        A  GGFV+ GET EEAL RE++EE G N +  +RL+GVYS P+RD R HT+S A++    G LKAGDDAK + V+P+    VE + L FDH  ILR   + ++
Sbjct:   13 GAEVSEFREEVKALAEKHG----LKAELHRCI---GLTVDGVIIYN-------NGIVLIKRKYEPFKDHFALPGGFVEYGETAEEALKREMKEETGLN-VRILRLVGVYSDPNRDPRGHTVSVAFLCIGEGELKAGDDAKEVEVVPID--EVEKLPLAFDHAKILRDALHPKD 168          
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|214033217|gb|EEB74045.1| (ADP-ribose pyrophosphatase [Thermococcus sp. AM4])

HSP 1 Score: 100.908 bits (250), Expect = 8.059e-23
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = 0
Query:   95 VAVDAILEYSETKEGPVTALVFIKRRDRSIT---ACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYWYDRN 228
            + VD ++ Y+         +V IKR+        A  GGFV+ GET EEAL RE++EE G N +  +RL+GVYS P+RD R HT+S A++    G LKAGDDAK + V+P+    VE + L FDH  ILR   + ++
Sbjct:   52 LTVDGVIIYN-------NGIVLIKRKYEPFKDHFALPGGFVEYGETAEEALKREMKEETGLN-VRILRLVGVYSDPNRDPRGHTVSVAFLCIGEGELKAGDDAKEVEVVPID--EVEKLPLAFDHAKILRDALHPKD 178          
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|506339753|ref|WP_015859472.1| (NUDIX hydrolase [Thermococcus gammatolerans] >gi|239911472|gb|ACS34363.1| ADP-ribose pyrophosphatase (MutT) [Thermococcus gammatolerans EJ3])

HSP 1 Score: 100.138 bits (248), Expect = 1.310e-22
Identity = 64/173 (36.99%), Postives = 96/173 (55.49%), Query Frame = 0
Query:   59 GKQRGPFVWQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSIT---ACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYWYDRN 228
            GK    F  +V+ ++  H       A+   C+    + VD ++ Y+         LV IKR++       A  GGFV+ GET EEAL RE++EE G + +  ++L+GVYS P+RD R HT+S A++    G LKAGDDAK + V+P++    E + L FDH  ILR   + ++
Sbjct:   13 GKDISEFREEVKSLAEKHG----LKAELHRCI---GLTVDGVIIYN-------NGLVLIKRKNEPFKDHFALPGGFVEYGETVEEALKREMKEETGLD-VRILKLVGVYSDPNRDPRGHTVSVAFLCIGEGELKAGDDAKEVHVVPIE--EAEKLPLAFDHAKILRDALHPKD 168          
BLAST of EWM27004.1 vs. NCBI_GenBank
Match: gi|676385629|ref|XP_009036093.1| (hypothetical protein AURANDRAFT_63508 [Aureococcus anophagefferens] >gi|323453089|gb|EGB08961.1| hypothetical protein AURANDRAFT_63508 [Aureococcus anophagefferens])

HSP 1 Score: 106.686 bits (265), Expect = 1.352e-22
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 0
Query:   64 PFVWQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSITACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSY 223
            P+VW          GSC+ +  D + +C PS+A+D ++E  +        +V ++R D    A +GGFV +GE   +A+ RE++EE     +    L+GV+  P RD+RRHT+SA YV R  G  K G DA+++ V+P  V +++ +   FDH  I+  Y
Sbjct:   30 PYVWHGGAPGGEPAGSCW-AGPDGYAMCTPSLAIDLVIESGDD------GVVLVRRGDNGKYATMGGFVDVGELPRDAVARELREETNLELVGEPELLGVFGDPRRDERRHTVSAVYVARTAGEPKVGSDARAVVVVP--VGDLDGLDFAFDHRAIIGDY 180          
The following BLAST results are available for this feature:
BLAST of EWM27004.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109174|gb|EWM27004.1|0.000e+0100.00nudix hydrolase [Nannochloropsis gaditana][more]
gi|298707680|emb|CBJ25997.1|2.799e-3042.22MutT-like protein [Ectocarpus siliculosus][more]
gi|1210524420|dbj|GAX16678.1|5.601e-2641.25hypothetical protein FisN_21Hu117 [Fistulifera sol... [more]
gi|1055713312|ref|WP_067329558.1|1.759e-2343.17NUDIX hydrolase [Sulfurovum riftiae] >gi|100870593... [more]
gi|499570451|ref|WP_011251234.1|2.685e-2345.45NUDIX hydrolase [Thermococcus kodakarensis] >gi|57... [more]
gi|1011493561|ref|WP_062388238.1|2.923e-2345.86NUDIX hydrolase [Thermococcus peptonophilus] >gi|1... [more]
gi|851287202|ref|WP_048150956.1|6.861e-2337.57NUDIX hydrolase [Thermococcus sp. AM4][more]
gi|214033217|gb|EEB74045.1|8.059e-2343.07ADP-ribose pyrophosphatase [Thermococcus sp. AM4][more]
gi|506339753|ref|WP_015859472.1|1.310e-2236.99NUDIX hydrolase [Thermococcus gammatolerans] >gi|2... [more]
gi|676385629|ref|XP_009036093.1|1.352e-2235.00hypothetical protein AURANDRAFT_63508 [Aureococcus... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3674rna3674Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications