rna3673, rna3673 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3673
Unique Name	rna3673
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2067
Alignment location	CM002461.1:933490..936027 -

Link to JBrowse

Properties


Property Name	Value
Product	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Orig transcript id	gnl\|cribi\|Naga_100079g5.10186.mrna
Orig protein id	gnl\|cribi\|Naga_100079g5.10186
Gene	IDS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:933490..936027 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
IDS	gene3537	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26997.1	cds3664	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3673	rna3673-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:933490..936027-
coding sequence from alignment at CM002461.1:933490..936027-

mRNA sequence

>rna3673 ID=rna3673|Name=rna3673|organism=Nannochloropsis gaditana|type=mRNA|length=2067bp
CTACACAGGGACGGGAGGACTTGGGATCTATCATGTGGCACCCAGGCCTG
GCGGGCTGTTGTATTCGGCAGAATTTCCCGGGAGTATTACGAAGGTCCAC
GAGATGGCCCCCTCAAATGCATGTACTCAAGGCTTGCCTGGTGACGAATG
CTACGAGGCAACACCGACCCTTTCGGCGGCAATCTTTACTGTTTCTTAAT
GGTTGGCGTCAATTTCGCGTCACACCGGCAGTCACGCGCCTGGATGTTGG
CAAACCGACAGAGCAGCGCCCTGTTTCCCTCAAGGAGATGGGCCACCTCC
TGCTTCAGGAAAAGAAGACGTTTACCGTGGCATTGGCTGGCATTGGAGTC
GCATCTGCGTGTCAATTGTGTATACCTTATATTTTTGGCAGTGTAGTAGA
CTTGCTTTCAGCCACAGTTGGGGAAAATACGGACGCCCTCCACAGCAACA
CTGCGGTTTTGTCTGGACTGCAAGAGAACGCGATGGCTATGCTGGGCGTG
GGTTTGGCCGGAACGGCAGCCACCTATGCGAGCACCAGTCAACTGGATAT
TGTGGGGCAGAGGATCTCGATGAACTTGCGAAAGCGCTTGTTTGGCAACA
TACTTGACCAAGACCTGGCCTTCTTCGACGTGAACAAATCCGGTGAGCTT
GCCAATCGCCTCTCTACCGACGTCCACGAAGTCGCCGAGCACCTCGTCGA
GAACATCTCGAAATTTTTGCACGCGTCCGTCATGGCGACCGCGTCTGCGG
GAATGCTTCTGTACATATCTCCCTCCCTCAGCGTGATCACGCTCTCCGTC
GTGCCTGCGATCGCCCTGGGGGCCGCCCAGTACTCCAAGGTCGTGAAAAA
GCTGTCGTTGTCCCTTCTCAACAGCCTGGCCAAAAGCACGCAGCATGCGG
CAGAAAAAATGGCTGGCATTCGTGTGGTTCGGCATTTCGCAGCCGAAATT
CGTGAGAAGGAACGATACGGGCAGATCATCGACGAATCTTTGGGGTTGGC
CAAGCGGCTGGCCGTTTCCGAAGGAGTGTATGTGGCGGCTATCTTCGCTG
TGTCCAATTTTGCGTTGCTAGGAGTCTTATTTCTCGGGGCAGGGAAGGTG
TTGGAGGGTGTTTTGACGGTAGGCGGGCTCGCGAGTTACTGTTTGTATGC
CACAAGCCTGAGCGAGGCAATGAAGGACGCCACGGACGGGGTGGCGGGGG
TTATTCGTGCACAAGGCGCCGCGGGGAGGCTTTACGCGCTTCTGGAAACA
CGGCCACTGATGCAGAGGGGGGCGATTATCCCTCCGGCGGAAGCCATCCG
GGGTTGTATCGAGTTCAGGGACGTGACCTTTGCGTACCCAACGCGCCCAG
CAAGCCCAGTGCTAGAGGGCTTCAATTTGATGGACCGAGCGGATGCGGAA
AGAGCTCGCTTGCCCTCCTTCTAACCCGGATGTACGCTCCACTTCAGGGG
CAGGTCCTGCTCGATGGATACGACGTGGCGAGTCTCGATCCGGCATGGTT
GCGAAGGACGGTCGTGGTCATCACACAGGAGCCTCTCTTGTTTTCTGGTA
CCGTGAGGGAAAACATAGCTTTGGGAAAGCCCTCTGCCAGCCATGCTGAG
ATCGTCGAAGCTGCGACGCTTGCCAATGCGCACCGATTCATCTCTCGGCT
GCCTCAGCAATACGACACGCAAATAGGAGAGCGGGCGTTGGTCCTTTCTG
GAGGGCAAAAGCAACGCTTGGCCATCGCAAGGGCGATGCTCTTGAAACCA
ATAGTACTGGTAGTGGATGAGGGTACAACTGCATTGGATTCTATGAATCA
GGGGGAGGTTTTGCGACAGCTTTTACGTGAGTGTAAGGCGAGCACGGTGG
TGTTGATAGGACACTCGGCGACGGCATTGGAGGGATCGACGAGGCTGGTC
ACTCTCAACAGAGGAGGAAATATCGTGCGGGATGAGATGGTGAGAGAATC
TGAACTGCCGCACGTGAACAACTGGCGAGGATGAATCGAGCATCGAACAC
TACAAAAGGCCTCAGCGCGACTCGTGTCGATCGGGCGTGCGAAAAGGAAT
AGGGCCGAGCCGCTACG

protein sequence of rna3673

>rna3673-protein ID=rna3673-protein|Name=rna3673|organism=Nannochloropsis gaditana|type=polypeptide|length=477bp
MSPRSMPVLLVAVLAVLCTASVTAFHTPSSPSAPSIWGAKRGAASAAALT
RRHQAAADGEAVENVLSPKQERRRIIQSPNFHRQGFKAESEGVESQMVSE
FTSQLINEMKDSTYTFQKGDLTIKLAKSFGFCWGVERAVAMAYEARAHFP
EQRIHITNEIIHNPGVNERLADMNIDFLPVDEGKKQFEHIEKDDVVILPA
FGATIQEMQLLDKKGVQIVDTTCPWVAKVWTAVEKHRKLESTSVIHGKWN
HEETIATASFADVYIIVKDIHEAEYVCNYIVNGGDKAEFMEKFKNAVSEG
FDPDVDLEKVGLANQTTMYKRETRAIGKLFEKTMMHKYGPAEVKNHYAEF
DTICDATQERQDAITDLMEEKLDFILIVGGFDSSNTAHLKEIPHMQHIPS
FHIDRAERISADGSIEHREIDGSIVKTANFLPDGPLTIGVTSGASTPDAY
LQEAIERLFLLRTLKGQEAPQKDTVNA

mRNA from alignment at CM002461.1:933490..936027-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3673 ID=rna3673|Name=rna3673|organism=Nannochloropsis gaditana|type=mRNA|length=2538bp|location=Sequence derived from alignment at CM002461.1:933490..936027- (Nannochloropsis gaditana)
TCTTTTCGGAGTATGTTACCGTGGGCAAGATATGCTACAATAAACATATA
TTTTTGGGGGGTTACGGGGGACTGGAAAAGAATTATAGGAGTGGAAGGGC
GGGGCGGGCAATAATTCCCTAGACTGGGACAACACTGCCGCAATTTCACG
CATAAACATTCAACAAAAAGCGAGGCATCGGTGACTTCCCTCTCCACAGT
CCCGCGCTGGGGAAAAACCGGGGGAAATGTGCCAGTTGAGGTGCCCGCCT
ACCCAGTGGTGTTTGTAGCGTCAATGTATGACCCGAATCTTACGGCAAGC
CGATGCGACGGTCAGGACCTGGATGTGGGCTGGCTTTCCATCACCATGGT
CCCACACCGCCGTCCGGGTGCTGGATGATTGGGGTTTCCATCCCACACAC
GACGCGGAGTGCTGGACAGGCTTGGGATTCGTGGGGTTGGTCACTACGCT
GAGGTCATTTTGACCGCCGGGTGCAAATGCGCTGCCCGTCCACTCTGAAG
TTTCTTTCCTTTTTGATCAGGGTCCACGCCGGTCCAGGGAATGGAGACGC
CTGCCTACATTTTTCACAGGCTACCACGCAACATTATTTTTATTACTATT
TTTGTGGTTGGGATGTAATTACGGGTTTCTAGGCGCCGAAATTTCTACAG
GGAAAGAAGCCTGTTTTTTTCTTGGTTGCCATCCCTTGACTCCTCATCTG
AAGTGCTCACTTTGCTCTTTCCTCTCTTCTGCCACGCTCTCAGGCACCAT
GTCACCACGATCAATGCCCGTTCTACTGGTTGCCGTGCTTGCAGTCCTCT
GCACAGCGTCGGTCACCGCCTTTCATACTCCCTCTTCTCCTTCTGCCCCC
AGCATTTGGGGAGCGAAACGCGGCGCAGCTTCAGCTGCTGCTCTCACCAG
GCGCCATCAAGCCGCTGCAGATGGCGAGGCAGTCGAAAACGTCTTGTCTC
CCAAGCAAGAACGGCGTCGCATTATCCAGTCGCCCAACTTTCACCGGCAA
GGGTTCAAGGCTGAAAGCGAGGGGGTGGAAAGCCAGATGGTTTCAGAATT
CACTTCCCAACTCATCAACGAGATGAAGGACTCGACATACACCTTCCAAA
AGGGAGACTTGACAATTAAACTGGCAAAGAGCTTCGGATTCTGCTGGGGC
GTGGAGCGTGCGGTCGCTATGGCTTATGAGGCGCGTGCGCATTTCCCTGA
GCAACGCATCCATATCACGAACGAAATCATTCACAATCCTGGTGTGAACG
AACGTTTGGCAGACATGAACATCGACTTTCTGCCTGTCGACGAAGGTAAA
AAACAGTTTGAGCATATCGAGAAGGACGACGTGGTGATCCTCCCTGCATT
TGGGGCGACGATTCAAGAGATGCAGCTCTTGGACAAGAAGGGGGTACAGA
TCGTGGATACCACATGCCCGTGGGTAGCAAAGGTCTGGACCGCGGTTGAG
AAGCACCGAAAATTGGAGAGCACGAGTGTGATTCATGGGAAGTGGAACCA
TGAGGAGACCATCGCCACGGCCAGTTTTGCGGACGTTTACATCATCGTGA
AGGATATTCACGAAGCGGAGTACGTCTGTAACTACATTGTGAACGGAGGA
GACAAGGCAGAGTTCATGGAGAAATTCAAAAATGCCGTGAGCGAAGGCTT
CGACCCGGACGTGGACCTGGAGAAGGTAGGACTGGCGAACCAGACGACCA
TGTACAAGCGTGAGACGCGAGCCATAGGGAAGCTGTTTGAGAAGACGATG
ATGCACAAGTATGGACCAGCAGAGGTCAAGAATCACTACGCGGAATTTGA
CACGATTTGCGACGCCACGCAAGAGCGGCAAGATGCCATCACGGACCTGA
TGGAAGAGAAACTGGACTTCATCTTGATCGTGGGCGGCTTCGACTCGAGC
AACACGGCGCACTTGAAGGAAATACCGCACATGCAGCACATTCCCTCCTT
CCACATTGATCGGGCCGAGCGGATCTCCGCCGATGGCTCCATCGAACACC
GGGAGATCGACGGCTCGATCGTCAAAACGGCAAACTTTCTCCCCGACGGG
CCCTTGACGATCGGAGTGACCTCCGGGGCCTCAACCCCCGACGCCTACCT
TCAGGAAGCGATCGAACGCTTATTCTTGTTGCGGACTTTGAAGGGCCAAG
AGGCTCCCCAGAAAGATACAGTGAATGCGTGAGCCTTGGGAAAAGGGGGA
GGGGGCCAATGGAGGGAACGGCCAGTGCCAGTGTGGCGTGCCTCGGGAGG
AGGCGGATGCCTGGATGAAGGAAGTCTGTAGCATACTTTTTTTTACATTT
GAAGCGTACGGGAGGCGTCACGGTCCCCGTTAATGATAGTTGTGTTTCCC
CCAGTCAGTTTAATGCTGCACGCTGAGGACAGAGTAAAAGATGAACAAAA
ATGATGTCACGGTCGCGTGTGTCAAGACACGGGGAGTTTGGGTGAGGGGA
GTCACGACGTGGGCGAACAGGCCACTCGGTAGGGTGGGGATGACATGATA
CCGTAATTGAAAGAAGAACCAAAACTTTGACATAACGA

Coding sequence (CDS) from alignment at CM002461.1:933490..936027-

>rna3673 ID=rna3673|Name=rna3673|organism=Nannochloropsis gaditana|type=CDS|length=1434bp|location=Sequence derived from alignment at CM002461.1:933490..936027- (Nannochloropsis gaditana)
ATGTCACCACGATCAATGCCCGTTCTACTGGTTGCCGTGCTTGCAGTCCT
CTGCACAGCGTCGGTCACCGCCTTTCATACTCCCTCTTCTCCTTCTGCCC
CCAGCATTTGGGGAGCGAAACGCGGCGCAGCTTCAGCTGCTGCTCTCACC
AGGCGCCATCAAGCCGCTGCAGATGGCGAGGCAGTCGAAAACGTCTTGTC
TCCCAAGCAAGAACGGCGTCGCATTATCCAGTCGCCCAACTTTCACCGGC
AAGGGTTCAAGGCTGAAAGCGAGGGGGTGGAAAGCCAGATGGTTTCAGAA
TTCACTTCCCAACTCATCAACGAGATGAAGGACTCGACATACACCTTCCA
AAAGGGAGACTTGACAATTAAACTGGCAAAGAGCTTCGGATTCTGCTGGG
GCGTGGAGCGTGCGGTCGCTATGGCTTATGAGGCGCGTGCGCATTTCCCT
GAGCAACGCATCCATATCACGAACGAAATCATTCACAATCCTGGTGTGAA
CGAACGTTTGGCAGACATGAACATCGACTTTCTGCCTGTCGACGAAGGTA
AAAAACAGTTTGAGCATATCGAGAAGGACGACGTGGTGATCCTCCCTGCA
TTTGGGGCGACGATTCAAGAGATGCAGCTCTTGGACAAGAAGGGGGTACA
GATCGTGGATACCACATGCCCGTGGGTAGCAAAGGTCTGGACCGCGGTTG
AGAAGCACCGAAAATTGGAGAGCACGAGTGTGATTCATGGGAAGTGGAAC
CATGAGGAGACCATCGCCACGGCCAGTTTTGCGGACGTTTACATCATCGT
GAAGGATATTCACGAAGCGGAGTACGTCTGTAACTACATTGTGAACGGAG
GAGACAAGGCAGAGTTCATGGAGAAATTCAAAAATGCCGTGAGCGAAGGC
TTCGACCCGGACGTGGACCTGGAGAAGGTAGGACTGGCGAACCAGACGAC
CATGTACAAGCGTGAGACGCGAGCCATAGGGAAGCTGTTTGAGAAGACGA
TGATGCACAAGTATGGACCAGCAGAGGTCAAGAATCACTACGCGGAATTT
GACACGATTTGCGACGCCACGCAAGAGCGGCAAGATGCCATCACGGACCT
GATGGAAGAGAAACTGGACTTCATCTTGATCGTGGGCGGCTTCGACTCGA
GCAACACGGCGCACTTGAAGGAAATACCGCACATGCAGCACATTCCCTCC
TTCCACATTGATCGGGCCGAGCGGATCTCCGCCGATGGCTCCATCGAACA
CCGGGAGATCGACGGCTCGATCGTCAAAACGGCAAACTTTCTCCCCGACG
GGCCCTTGACGATCGGAGTGACCTCCGGGGCCTCAACCCCCGACGCCTAC
CTTCAGGAAGCGATCGAACGCTTATTCTTGTTGCGGACTTTGAAGGGCCA
AGAGGCTCCCCAGAAAGATACAGTGAATGCGTGA

Synonyms

Publications