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Properties
| Property Name | Value |
|---|
| Product | atp-binding cassette sub-family b member mitochondrial |
| Orig transcript id | gnl|cribi|Naga_100079g4.10188.mrna |
| Orig protein id | gnl|cribi|Naga_100079g4.10188 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:930907..933487 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3672 ID=rna3672|Name=rna3672|organism=Nannochloropsis gaditana|type=mRNA|length=2098bp
CTACACAGGGACGGGAGGACTTGGGATCTATCATGTGGCACCCAGGCCTG
GCGGGCTGTTGTATTCGGCAGAATTTCCCGGGAGTATTACGAAGGTCCAC
GAGATGGCCCCCTCAAATGCATGTACTCAAGGCTTGCCTGGTGACGAATG
CTACGAGGCAACACCGACCCTTTCGGCGGCAATCTTTACTGTTTCTTAAT
GGTTGGCGTCAATTTCGCGTCACACCGGCAGTCACGCGCCTGGATGTTGG
CAAACCGACAGAGCAGCGCCCTGTTTCCCTCAAGGAGATGGGCCACCTCC
TGCTTCAGGAAAAGAAGACGTTTACCGTGGCATTGGCTGGCATTGGAGTC
GCATCTGCGTGTCAATTGTGTATACCTTATATTTTTGGCAGTGTAGTAGA
CTTGCTTTCAGCCACAGTTGGGGAAAATACGGACGCCCTCCACAGCAACA
CTGCGGTTTTGTCTGGACTGCAAGAGAACGCGATGGCTATGCTGGGCGTG
GGTTTGGCCGGAACGGCAGCCACCTATGCGAGCACCAGTCAACTGGATAT
TGTGGGGCAGAGGATCTCGATGAACTTGCGAAAGCGCTTGTTTGGCAACA
TACTTGACCAAGACCTGGCCTTCTTCGACGTGAACAAATCCGGTGAGCTT
GCCAATCGCCTCTCTACCGACGTCCACGAAGTCGCCGAGCACCTCGTCGA
GAACATCTCGAAATTTTTGCACGCGTCCGTCATGGCGACCGCGTCTGCGG
GAATGCTTCTGTACATATCTCCCTCCCTCAGCGTGATCACGCTCTCCGTC
GTGCCTGCGATCGCCCTGGGGGCCGCCCAGTACTCCAAGGTCGTGAAAAA
GCTGTCGTTGTCCCTTCTCAACAGCCTGGCCAAAAGCACGCAGCATGCGG
CAGAAAAAATGGCTGGCATTCGTGTGGTTCGGCATTTCGCAGCCGAAATT
CGTGAGAAGGAACGATACGGGCAGATCATCGACGAATCTTTGGGGTTGGC
CAAGCGGCTGGCCGTTTCCGAAGGAGTGTATGTGGCGGCTATCTTCGCTG
TGTCCAATTTTGCGTTGCTAGGAGTCTTATTTCTCGGGGCAGGGAAGGTG
TTGGAGGGTGTTTTGACGGTAGGCGGGCTCGCGAGTTACTGTTTGTATGC
CACAAGCCTGAGCGAGGCAATGAAGGACGCCACGGACGGGGTGGCGGGGG
TTATTCGTGCACAAGGCGCCGCGGGGAGGCTTTACGCGCTTCTGGAAACA
CGGCCACTGATGCAGAGGGGGGCGATTATCCCTCCGGCGGAAGCCATCCG
GGGTTGTATCGAGTTCAGGGACGTGACCTTTGCGTACCCAACGCGCCCAG
CAAGCCCAGTGCTAGAGGGCTTCAATTTGATGCTTAAGCCTCGAGAAAAT
CTGGGCATCACAGGACCGAGCGGATGCGGAAAGAGCTCGCTTGCCCTCCT
TCTAACCCGGATGTACGCTCCACTTCAGGGGCAGGTCCTGCTCGATGGAT
ACGACGTGGCGAGTCTCGATCCGGCATGGTTGCGAAGGACGGTCGTGGTC
ATCACACAGGAGCCTCTCTTGTTTTCTGGTACCGTGAGGGAAAACATAGC
TTTGGGAAAGCCCTCTGCCAGCCATGCTGAGATCGTCGAAGCTGCGACGC
TTGCCAATGCGCACCGATTCATCTCTCGGCTGCCTCAGCAATACGACACG
CAAATAGGAGAGCGGGCGTTGGTCCTTTCTGGAGGGCAAAAGCAACGCTT
GGCCATCGCAAGGGCGATGCTCTTGAAACCAATAGTACTGGTAGTGGATG
AGGGTACAACTGCATTGGATTCTATGAATCAGGGGGAGGTTTTGCGACAG
CTTTTACGTGAGTGTAAGGCGAGCACGGTGGTGTTGATAGGACACTCGGC
GACGGCATTGGAGGGATCGACGAGGCTGGTCACTCTCAACAGAGGAGGAA
ATATCGTGCGGGATGAGATGGTGAGAGAATCTGAACTGCCGCACGTGAAC
AACTGGCGAGGATGAATCGAGCATCGAACACTACAAAAGGCCTCAGCGCG
ACTCGTGTCGATCGGGCGTGCGAAAAGGAATAGGGCCGAGCCGCTACG back to topprotein sequence of rna3672 >rna3672-protein ID=rna3672-protein|Name=rna3672|organism=Nannochloropsis gaditana|type=polypeptide|length=463bp
MWHPGLAGCCIRQNFPGVLRRSTRWPPQMHVLKACLVTNATRQHRPFRRQ
SLLFLNGWRQFRVTPAVTRLDVGKPTEQRPVSLKEMGHLLLQEKKTFTVA
LAGIGVASACQLCIPYIFGSVVDLLSATVGENTDALHSNTAVLSGLQENA
MAMLGVGLAGTAATYASTSQLDIVGQRISMNLRKRLFGNILDQDLAFFDV
NKSGELANRLSTDVHEVAEHLVENISKFLHASVMATASAGMLLYISPSLS
VITLSVVPAIALGAAQYSKVVKKLSLSLLNSLAKSTQHAAEKMAGIRVVR
HFAAEIREKERYGQIIDESLGLAKRLAVSEGVYVAAIFAVSNFALLGVLF
LGAGKVLEGVLTVGGLASYCLYATSLSEAMKDATDGVAGVIRAQGAAGRL
YALLETRPLMQRGAIIPPAEAIRGCIEFRDVTFAYPTRPASPVLEGFNLM
DRADAERARLPSF back to topmRNA from alignment at CM002461.1:930907..933487+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3672 ID=rna3672|Name=rna3672|organism=Nannochloropsis gaditana|type=mRNA|length=2581bp|location=Sequence derived from alignment at CM002461.1:930907..933487+ (Nannochloropsis gaditana)
CTACACAGGGACGGGAGGACTTGGGATCTATCATGTGGCACCCAGGCCTG
GCGGGCTGTTGTATTCGGCAGAATTTCCCGGGAGTATTACGAAGGTCCAC
GAGATGGCCCCCTCAAATGCATGTACTCAAGGCTTGCCTGGTGACGAATG
CTACGAGGCAACACCGACCCTTTCGGCGGCAATCTTTACTGTTTCTTAAT
GGTTGGCGTCAATTTCGCGTCACACCGGCAGTCACGCGCCTGGATGTTGG
CAAACCGACAGAGCAGCGCCCTGTTTCCCTCAAGGAGATGGGCCACCTCC
TGCttcaggaaaagaagacgtTTACCGTGGCATTGGCTGGCATTGGAGTC
GCATCTGCGTGTCAATTGTGTATACCTTATATTTTTGGCAGTGTAGTAGA
CTTGCTTTCAGCCACAGTTGGGGAAAATACGGACGCCCTCCACAGCAACA
CTGCGGTTTTGTCTGGACTGCAAGAGAACGCGATGGCTATGCTGGGCGTG
GGTTTGGCCGGAACGGCAGCCACCTATGCGAGCACCAGTCAACTGGATAT
TGTGGGGCAGAGGATCTCGATGAACTTGCGAAAGCGCTTGTTTGGCAACA
TAGTACgtggttgggggggggcaccaTGCGAAGGGTTGTCGAAGAGCCAC
GTGCTCAGTCCTAGATCGTATCGATGACGCTTCTTACATGGATAGCAACG
CTGATTGAATCCTGCCGGAGGGCAGGCACGGTGATCGATCACACTTCTGA
ACCCGCacgccttttccatcccccCAGCTTGACCAAGACCTGGCCTTCTT
CGACGTGAACAAATCCGGTGAGCTTGCCAATCGCCTCTCTACCGACGTCC
ACGAAGTCGCCGAGCACCTCGTCGAGAACATCTCGAAATTTTTGCACGCG
TCCGTCATGGCGACCGCGTCTGCGGGAATGCTTCTGTAcatatctccctc
cctcagcgtGATCACGCTCTCCGTCGTGCCTGCGATCGCCCTGGGGGCCG
CCCAGTACTCCAAGGTCGTGAAAAAGCTGTCGTTGTCCCTTCTCAACAGC
CTGGCCAAAAGCACGCAGCATGCGGCAGAAAAAATGGCTGGCATTCGTGT
GGTTCGGCATTTCGCAGCCGAAATTCGTGAGAAGGAACGATACGGGCAGA
TCATCGACGAATCTTTGGGGTTGGCCAAGCGGCTGGCCGTTTCCGAAGGA
GTGTATGTGGCGGCTATCTTCGCTGTGTCCAATTTTGCGTTGCTAGGAGT
CTTATTTCTcggggcagggaaggtgTTGGAGGGTGTTTTGACGGTAGGCG
GGCTCGCGAGTTACTGTTTGTATGCCACAAGCCTGAGCGAGGCAATGAAG
GACGCCACGGACGGGGTGGCGGGGGTTATTCGTGCACAAGGCGCCGCGGG
GAGGCTTTACGCGCTTCTGGAAACACGGCCACTGATGCAGAGGGGGGCGA
TTATCCCTCCGGCGGAAGCCATCCGGGGTTGTATCGAGTTCAGGGACGTG
ACCTTTGCGTACCCAACGCGCCCAGCAAGCCCAGTGCTAGAGGGCTTCAA
TTTGATGGTAAGTCGTTGTCGACTCTTGCGATTTATCAGATATTCTGTCC
TTGATGGTGCCATTTTGAGGTTCCGTGCCTCCCGGTcgatccctttccct
gcACTCTATGAATCCGTCAGCCGACAGTCTTTCCCCCACGGTTTTGCACT
CTCCTTCGTACAGCTTAAGCCTCGAGAAAATCTGGGCATCACAGGACCGA
GCGGATGCGGAAAGAGCtcgcttgccctccttctaaCCCGGATGTACGCT
CCACTTCAGGGGCAGGTCCTGCTCGATGGATACGACGTGGCGAGTCTCGA
TCCGGCATGGTTGCGAAGGACGGTCGTGGTCATCACACAGGAGGTAATTT
CTCGATGAAAGGAAAATCGTAGGAGCACTTCCCTATCCAGGCTGTCCAAT
TCTTTGTCGTAGAATATACCGTGAACCGGAACTGGGTTGGTTCTTGCGAT
CAAGGTGTTGCAACTGACTGGAGGCCTCAATCCTTTTTGTCACAGCCTCT
CTTGTTTTCTGGTACCGTGAGGGAAAACATAGCTTTGGGAAAGCCCTCTG
CCAGCCATGCTGAGATCGTCGAAGCTGCGACGCTTGCCAATGCGCACCGA
TTCATCTCTCGGCTGCCTCAGCAATACGACACGCAAATAGGAGAGCGGGC
GTTGGTCCTTTCTGGAGGGCAAAAGCAACGCTTGGCCATCGCAAGGGCGA
TGCTCTTGAAACCAATAGTACTGGTAGTGGATGAGGGTACAACTGCATTG
GATTCTATGAATCAGGGGGAGGTTTTGCGACAGCTTTTACGTGAGTGTAA
GGCGAGCACGGTGGTGTTGATAGGACACTCGGCGACGGCATTGGAGGGAT
CGACGAGGCTGGTCACTCTCaacagaggaggaaataTCGTGCGGGATGAG
ATGGTGAGAGAATCTGAACTGCCGCACGTGAACAACTGGCGAGGATGAAT
CGAGCATCGAACACTACAAAAGGCCTCAGCGCGACTCGTGTCGATCGGGC
GTGCGAAAAGGAATAGGGCCGAGCCGCTACG back to topCoding sequence (CDS) from alignment at CM002461.1:930907..933487+ >rna3672 ID=rna3672|Name=rna3672|organism=Nannochloropsis gaditana|type=CDS|length=4176bp|location=Sequence derived from alignment at CM002461.1:930907..933487+ (Nannochloropsis gaditana)
ATGTGGCACCCAGGCCTGGCGGGCTGTTGTATTCGGCAGAATTTCCCGGG
AGTATTACGAAGGTCCACGAGATGGCCCCCTCAAATGCATGTACTCAAGG
CTTGCCTGGTGACGAATGCTACGAGGCAACACCGACCCTTTCGGCGGCAA
TCTTTACTGTTTCTTAATGGTTGGCGTCAATTTCGCGTCACACCGGCAGT
CACGCGCCTGGATGTTGGCAAACCGACAGAGCAGCGCCCTGTTTCCCTCA
AGGAGATGGGCCACCTCCTGCttcaggaaaagaagacgtTTACCGTGGCA
TTGGCTGGCATTGGAGTCGCATCTGCGTGTCAATTGTGTATACCTTATAT
TTTTGGCAGTGTAGTAGACTTGCTTTCAGCCACAGTTGGGGAAAATACGG
ACGCCCTCCACAGCAACACTGCGGTTTTGTCTGGACTGCAAGAGAACGCG
ATGGCTATGCTGGGCGTGGGTTTGGCCGGAACGGCAGCCACCTATGCGAG
CACCAGTCAACTGGATATTGTGGGGCAGAGGATCTCGATGAACTTGCGAA
AGCGCTTGTTTGGCAACATACTTGACCAAGACCTGGCCTTCTTCGACGTG
AACAAATCCGGTGAGCTTGCCAATCGCCTCTCTACCGACGTCCACGAAGT
CGCCGAGCACCTCGTCGAGAACATCTCGAAATTTTTGCACGCGTCCGTCA
TGGCGACCGCGTCTGCGGGAATGCTTCTGTAcatatctccctccctcagc
gtGATCACGCTCTCCGTCGTGCCTGCGATCGCCCTGGGGGCCGCCCAGTA
CTCCAAGGTCGTGAAAAAGCTGTCGTTGTCCCTTCTCAACAGCCTGGCCA
AAAGCACGCAGCATGCGGCAGAAAAAATGGCTGGCATTCGTGTGGTTCGG
CATTTCGCAGCCGAAATTCGTGAGAAGGAACGATACGGGCAGATCATCGA
CGAATCTTTGGGGTTGGCCAAGCGGCTGGCCGTTTCCGAAGGAGTGTATG
TGGCGGCTATCTTCGCTGTGTCCAATTTTGCGTTGCTAGGAGTCTTATTT
CTcggggcagggaaggtgTTGGAGGGTGTTTTGACGGTAGGCGGGCTCGC
GAGTTACTGTTTGTATGCCACAAGCCTGAGCGAGGCAATGAAGGACGCCA
CGGACGGGGTGGCGGGGGTTATTCGTGCACAAGGCGCCGCGGGGAGGCTT
TACGCGCTTCTGGAAACACGGCCACTGATGCAGAGGGGGGCGATTATCCC
TCCGGCGGAAGCCATCCGGGGTTGTATCGAGTTCAGGGACGTGACCTTTG
CGTACCCAACGCGCCCAGCAAGCCCAGTGCTAGAGGGCTTCAATTTGATG
GACCGAGCGGATGCGGAAAGAGCtcgcttgccctccttctaaATGTGGCA
CCCAGGCCTGGCGGGCTGTTGTATTCGGCAGAATTTCCCGGGAGTATTAC
GAAGGTCCACGAGATGGCCCCCTCAAATGCATGTACTCAAGGCTTGCCTG
GTGACGAATGCTACGAGGCAACACCGACCCTTTCGGCGGCAATCTTTACT
GTTTCTTAATGGTTGGCGTCAATTTCGCGTCACACCGGCAGTCACGCGCC
TGGATGTTGGCAAACCGACAGAGCAGCGCCCTGTTTCCCTCAAGGAGATG
GGCCACCTCCTGCttcaggaaaagaagacgtTTACCGTGGCATTGGCTGG
CATTGGAGTCGCATCTGCGTGTCAATTGTGTATACCTTATATTTTTGGCA
GTGTAGTAGACTTGCTTTCAGCCACAGTTGGGGAAAATACGGACGCCCTC
CACAGCAACACTGCGGTTTTGTCTGGACTGCAAGAGAACGCGATGGCTAT
GCTGGGCGTGGGTTTGGCCGGAACGGCAGCCACCTATGCGAGCACCAGTC
AACTGGATATTGTGGGGCAGAGGATCTCGATGAACTTGCGAAAGCGCTTG
TTTGGCAACATACTTGACCAAGACCTGGCCTTCTTCGACGTGAACAAATC
CGGTGAGCTTGCCAATCGCCTCTCTACCGACGTCCACGAAGTCGCCGAGC
ACCTCGTCGAGAACATCTCGAAATTTTTGCACGCGTCCGTCATGGCGACC
GCGTCTGCGGGAATGCTTCTGTAcatatctccctccctcagcgtGATCAC
GCTCTCCGTCGTGCCTGCGATCGCCCTGGGGGCCGCCCAGTACTCCAAGG
TCGTGAAAAAGCTGTCGTTGTCCCTTCTCAACAGCCTGGCCAAAAGCACG
CAGCATGCGGCAGAAAAAATGGCTGGCATTCGTGTGGTTCGGCATTTCGC
AGCCGAAATTCGTGAGAAGGAACGATACGGGCAGATCATCGACGAATCTT
TGGGGTTGGCCAAGCGGCTGGCCGTTTCCGAAGGAGTGTATGTGGCGGCT
ATCTTCGCTGTGTCCAATTTTGCGTTGCTAGGAGTCTTATTTCTcggggc
agggaaggtgTTGGAGGGTGTTTTGACGGTAGGCGGGCTCGCGAGTTACT
GTTTGTATGCCACAAGCCTGAGCGAGGCAATGAAGGACGCCACGGACGGG
GTGGCGGGGGTTATTCGTGCACAAGGCGCCGCGGGGAGGCTTTACGCGCT
TCTGGAAACACGGCCACTGATGCAGAGGGGGGCGATTATCCCTCCGGCGG
AAGCCATCCGGGGTTGTATCGAGTTCAGGGACGTGACCTTTGCGTACCCA
ACGCGCCCAGCAAGCCCAGTGCTAGAGGGCTTCAATTTGATGGACCGAGC
GGATGCGGAAAGAGCtcgcttgccctccttctaaATGTGGCACCCAGGCC
TGGCGGGCTGTTGTATTCGGCAGAATTTCCCGGGAGTATTACGAAGGTCC
ACGAGATGGCCCCCTCAAATGCATGTACTCAAGGCTTGCCTGGTGACGAA
TGCTACGAGGCAACACCGACCCTTTCGGCGGCAATCTTTACTGTTTCTTA
ATGGTTGGCGTCAATTTCGCGTCACACCGGCAGTCACGCGCCTGGATGTT
GGCAAACCGACAGAGCAGCGCCCTGTTTCCCTCAAGGAGATGGGCCACCT
CCTGCttcaggaaaagaagacgtTTACCGTGGCATTGGCTGGCATTGGAG
TCGCATCTGCGTGTCAATTGTGTATACCTTATATTTTTGGCAGTGTAGTA
GACTTGCTTTCAGCCACAGTTGGGGAAAATACGGACGCCCTCCACAGCAA
CACTGCGGTTTTGTCTGGACTGCAAGAGAACGCGATGGCTATGCTGGGCG
TGGGTTTGGCCGGAACGGCAGCCACCTATGCGAGCACCAGTCAACTGGAT
ATTGTGGGGCAGAGGATCTCGATGAACTTGCGAAAGCGCTTGTTTGGCAA
CATACTTGACCAAGACCTGGCCTTCTTCGACGTGAACAAATCCGGTGAGC
TTGCCAATCGCCTCTCTACCGACGTCCACGAAGTCGCCGAGCACCTCGTC
GAGAACATCTCGAAATTTTTGCACGCGTCCGTCATGGCGACCGCGTCTGC
GGGAATGCTTCTGTAcatatctccctccctcagcgtGATCACGCTCTCCG
TCGTGCCTGCGATCGCCCTGGGGGCCGCCCAGTACTCCAAGGTCGTGAAA
AAGCTGTCGTTGTCCCTTCTCAACAGCCTGGCCAAAAGCACGCAGCATGC
GGCAGAAAAAATGGCTGGCATTCGTGTGGTTCGGCATTTCGCAGCCGAAA
TTCGTGAGAAGGAACGATACGGGCAGATCATCGACGAATCTTTGGGGTTG
GCCAAGCGGCTGGCCGTTTCCGAAGGAGTGTATGTGGCGGCTATCTTCGC
TGTGTCCAATTTTGCGTTGCTAGGAGTCTTATTTCTcggggcagggaagg
tgTTGGAGGGTGTTTTGACGGTAGGCGGGCTCGCGAGTTACTGTTTGTAT
GCCACAAGCCTGAGCGAGGCAATGAAGGACGCCACGGACGGGGTGGCGGG
GGTTATTCGTGCACAAGGCGCCGCGGGGAGGCTTTACGCGCTTCTGGAAA
CACGGCCACTGATGCAGAGGGGGGCGATTATCCCTCCGGCGGAAGCCATC
CGGGGTTGTATCGAGTTCAGGGACGTGACCTTTGCGTACCCAACGCGCCC
AGCAAGCCCAGTGCTAGAGGGCTTCAATTTGATGGACCGAGCGGATGCGG
AAAGAGCtcgcttgccctccttctaa back to top
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